Wall clock time and date at job start Tue Mar 31 2020 04:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40166 * 119.82417 * 2 1 4 4 C 1.35681 * 119.27078 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.48409 * 180.02562 * 4 3 2 6 6 N 1.36167 * 119.03329 * 0.02562 * 4 3 2 7 7 N 1.40104 * 133.22949 * 180.35955 * 6 4 3 8 8 C 1.31986 * 106.92293 * 180.02562 * 7 6 4 9 9 C 1.48131 * 125.32296 * 179.84989 * 8 7 6 10 10 O 1.21530 * 119.99784 * 6.51551 * 9 8 7 11 11 N 1.34779 * 119.99988 * 186.51403 * 9 8 7 12 12 C 1.46499 * 119.99906 * 5.34761 * 11 9 8 13 13 C 1.46501 * 119.99524 * 185.34800 * 11 9 8 14 14 C 1.53496 * 114.20461 * 239.99536 * 13 11 9 15 15 N 1.47063 * 87.99039 * 220.15213 * 14 13 11 16 16 C 1.36928 * 136.06373 * 207.08871 * 15 14 13 17 17 H 1.08007 * 119.99554 * 8.05816 * 16 15 14 18 18 C 1.38807 * 120.00392 * 188.05693 * 16 15 14 19 19 N 1.31619 * 120.00387 * 195.71222 * 18 16 15 20 20 Si 1.86800 * 119.99907 * 15.71264 * 18 16 15 21 21 H 1.48503 * 109.46954 * 269.99935 * 20 18 16 22 22 H 1.48492 * 109.47132 * 29.99821 * 20 18 16 23 23 H 1.48502 * 109.47065 * 150.00293 * 20 18 16 24 24 C 1.47072 * 87.88122 * 27.34451 * 15 14 13 25 25 N 1.33466 * 109.35448 * 359.58923 * 8 7 6 26 26 C 1.32505 * 109.75264 * 0.26366 * 25 8 7 27 27 N 1.31264 * 119.81921 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47531 * 270.02777 * 1 2 3 29 29 H 1.09005 * 109.47014 * 30.01983 * 1 2 3 30 30 H 1.08995 * 109.47435 * 150.02733 * 1 2 3 31 31 H 1.08003 * 120.36589 * 359.97344 * 3 2 1 32 32 H 1.09002 * 109.47526 * 90.00004 * 5 4 3 33 33 H 1.08999 * 109.47199 * 210.00487 * 5 4 3 34 34 H 1.09002 * 109.47302 * 329.99925 * 5 4 3 35 35 H 1.09000 * 109.47129 * 274.34275 * 12 11 9 36 36 H 1.09000 * 109.47039 * 34.34376 * 12 11 9 37 37 H 1.09000 * 109.46578 * 154.34058 * 12 11 9 38 38 H 1.09001 * 113.28730 * 13.07009 * 13 11 9 39 39 H 1.09006 * 113.46382 * 105.37446 * 14 13 11 40 40 H 1.09004 * 113.46850 * 334.93537 * 14 13 11 41 41 H 0.97008 * 119.99809 * 354.92497 * 19 18 16 42 42 H 1.09002 * 113.46714 * 87.43953 * 24 15 14 43 43 H 1.09005 * 113.46757 * 217.87907 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2160 0.0000 4 6 3.5608 1.2029 0.0005 5 6 4.3378 2.4942 0.0011 6 7 4.2101 0.0060 0.0005 7 7 5.5650 -0.3507 0.0074 8 6 5.6150 -1.6696 0.0029 9 6 6.8553 -2.4796 0.0042 10 8 7.9354 -1.9368 0.1292 11 7 6.7858 -3.8186 -0.1332 12 6 5.4970 -4.4615 -0.4010 13 6 7.9992 -4.6309 -0.0148 14 6 8.3356 -5.4465 -1.2708 15 7 8.7177 -6.5563 -0.3849 16 6 9.5729 -7.6234 -0.4537 17 1 10.2598 -7.7123 -1.2825 18 6 9.5573 -8.5908 0.5416 19 7 10.5601 -9.4359 0.6538 20 14 8.1130 -8.6934 1.7218 21 1 8.3786 -7.8358 2.9047 22 1 6.8808 -8.2256 1.0379 23 1 7.9317 -10.1003 2.1612 24 6 7.7719 -6.0195 0.6052 25 7 4.3735 -2.1594 0.0026 26 6 3.4993 -1.1636 0.0012 27 7 2.1597 -1.1388 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 1.6672 2.1531 -0.0004 32 1 4.5248 2.8053 1.0289 33 1 5.2879 2.3468 -0.5124 34 1 3.7628 3.2645 -0.5128 35 1 4.9805 -4.6464 0.5409 36 1 4.8885 -3.8089 -1.0270 37 1 5.6631 -5.4076 -0.9161 38 1 8.8447 -4.0843 0.4030 39 1 9.1704 -5.0397 -1.8417 40 1 7.4669 -5.6658 -1.8916 41 1 11.2743 -9.4311 -0.0027 42 1 6.7545 -6.3899 0.4791 43 1 8.1264 -6.1009 1.6328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044261359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:37 Heat of formation + Delta-G solvation = 186.799492 kcal Electronic energy + Delta-G solvation = -27665.776630 eV Core-core repulsion = 23752.057500 eV Total energy + Delta-G solvation = -3913.719130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.34107 -40.29425 -39.28820 -37.94968 -35.92988 -34.75829 -32.88282 -32.26410 -31.76253 -29.57919 -28.51878 -28.08967 -26.80848 -25.52265 -25.26426 -23.48198 -22.62607 -21.80337 -20.12605 -19.12605 -18.70969 -18.32548 -17.50086 -17.23658 -17.00383 -16.31854 -15.49803 -15.43842 -15.01646 -14.74462 -14.41437 -14.17087 -14.15267 -13.73147 -13.67761 -13.28584 -13.19732 -13.17931 -12.84202 -12.80216 -12.31618 -12.17434 -12.01485 -11.93984 -11.85208 -11.63022 -11.17479 -10.61811 -10.50429 -10.47021 -10.17365 -10.12403 -10.03088 -9.66699 -9.23149 -9.16719 -8.69958 -8.34767 -7.19319 -6.30832 -3.23209 -0.13380 0.17206 1.31097 1.52382 2.56261 2.75294 2.87777 3.21779 3.44812 3.45499 3.50459 3.64721 3.66808 3.99103 4.22543 4.47390 4.57606 4.60815 4.63306 4.76562 4.83957 4.91664 4.96048 5.06147 5.10988 5.30092 5.37862 5.44460 5.47973 5.53594 5.59440 5.73759 5.75538 5.87948 5.89586 6.16399 6.20431 6.32869 6.40572 6.47588 6.90584 6.98593 7.08641 7.32026 7.46602 8.05515 8.24618 8.97330 9.49892 10.34684 11.19202 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.002631 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.484087 B =10637.844764 C =11408.148144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.235 3.765 3 C -0.225 4.225 4 C 0.207 3.793 5 C -0.124 4.124 6 N -0.331 5.331 7 N -0.270 5.270 8 C 0.249 3.751 9 C 0.604 3.396 10 O -0.510 6.510 11 N -0.572 5.572 12 C 0.077 3.923 13 C 0.100 3.900 14 C 0.109 3.891 15 N -0.616 5.616 16 C -0.305 4.305 17 H 0.084 0.916 18 C -0.022 4.022 19 N -0.928 5.928 20 Si 1.060 2.940 21 H -0.292 1.292 22 H -0.281 1.281 23 H -0.294 1.294 24 C 0.094 3.906 25 N -0.493 5.493 26 C 0.448 3.552 27 N -0.458 5.458 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.174 0.826 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.262 0.738 42 H 0.054 0.946 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.573 27.262 -1.878 36.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.069 3.931 3 C -0.250 4.250 4 C 0.089 3.911 5 C -0.181 4.181 6 N -0.113 5.113 7 N -0.104 5.104 8 C -0.035 4.035 9 C 0.385 3.615 10 O -0.382 6.382 11 N -0.304 5.304 12 C -0.065 4.065 13 C -0.003 4.003 14 C -0.019 4.019 15 N -0.344 5.344 16 C -0.431 4.431 17 H 0.102 0.898 18 C -0.221 4.221 19 N -0.570 5.570 20 Si 0.891 3.109 21 H -0.220 1.220 22 H -0.207 1.207 23 H -0.221 1.221 24 C -0.032 4.032 25 N -0.228 5.228 26 C 0.088 3.912 27 N -0.175 5.175 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.192 0.808 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.146 0.854 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.896 25.555 -0.505 34.990 hybrid contribution 0.545 1.507 -1.403 2.130 sum -23.350 27.062 -1.907 35.794 Atomic orbital electron populations 1.20901 0.86042 1.05044 1.04620 1.22083 0.98178 0.86790 0.86001 1.21651 0.91315 1.01503 1.10569 1.20926 0.92074 0.86561 0.91505 1.21099 1.01218 0.90618 1.05161 1.49073 1.07522 1.08003 1.46705 1.78892 0.88860 1.13307 1.29300 1.24316 0.93191 0.89475 0.96504 1.16440 0.84400 0.81916 0.78699 1.90845 1.27043 1.71058 1.49275 1.47730 1.10584 1.04462 1.67634 1.22137 0.83080 0.98884 1.02444 1.23767 0.86290 0.90114 1.00130 1.22788 0.97743 0.88018 0.93345 1.45885 1.45072 1.29766 1.13664 1.20097 1.11877 0.99301 1.11797 0.89810 1.25802 1.02642 0.93952 0.99726 1.70905 1.09708 1.40959 1.35423 0.83796 0.75751 0.75656 0.75654 1.21969 1.20727 1.22126 1.23133 0.94974 0.89476 0.95659 1.71259 0.97615 1.25811 1.28117 1.22889 0.90229 0.81754 0.96373 1.67898 1.01628 1.28879 1.19072 0.88599 0.89142 0.89031 0.80820 0.88351 0.88913 0.88287 0.91683 0.89408 0.90543 0.85434 0.92975 0.94187 0.92757 0.92848 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.24 10.19 36.00 0.37 0.13 16 2 C 0.24 1.48 6.83 -82.11 -0.56 0.92 16 3 C -0.23 -1.00 9.39 -39.77 -0.37 -1.38 16 4 C 0.21 1.52 6.86 -81.58 -0.56 0.97 16 5 C -0.12 -0.53 10.13 36.01 0.36 -0.16 16 6 N -0.33 -4.06 3.91 -10.07 -0.04 -4.10 16 7 N -0.27 -4.16 12.68 32.02 0.41 -3.75 16 8 C 0.25 4.09 7.56 -156.79 -1.18 2.90 16 9 C 0.60 10.88 7.69 -12.20 -0.09 10.79 16 10 O -0.51 -10.44 16.62 5.34 0.09 -10.35 16 11 N -0.57 -9.90 3.12 -174.55 -0.54 -10.45 16 12 C 0.08 1.15 8.07 59.85 0.48 1.63 16 13 C 0.10 1.96 4.55 -67.67 -0.31 1.65 16 14 C 0.11 2.26 8.23 -8.52 -0.07 2.19 16 15 N -0.62 -15.56 3.62 -184.62 -0.67 -16.22 16 16 C -0.30 -8.92 11.03 -15.06 -0.17 -9.08 16 17 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16 18 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 19 N -0.93 -29.60 13.70 55.49 0.76 -28.84 16 20 Si 1.06 26.95 25.51 -169.99 -4.34 22.61 16 21 H -0.29 -7.18 6.96 56.52 0.39 -6.78 16 22 H -0.28 -6.57 5.71 56.52 0.32 -6.25 16 23 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 24 C 0.09 2.05 5.02 -8.38 -0.04 2.01 16 25 N -0.49 -7.60 7.90 -12.23 -0.10 -7.70 16 26 C 0.45 6.05 8.98 -323.04 -2.90 3.15 16 27 N -0.46 -5.03 10.40 -10.02 -0.10 -5.13 16 28 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.09 -0.05 8.09 -51.93 -0.42 -0.47 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.17 -0.02 8.06 -52.48 -0.42 -0.44 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.09 8.09 -51.93 -0.42 -0.33 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.27 5.84 -51.93 -0.30 0.96 16 37 H 0.08 1.13 6.00 -51.93 -0.31 0.82 16 38 H 0.13 2.61 7.33 -51.93 -0.38 2.23 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.04 0.79 7.03 -51.93 -0.36 0.42 16 41 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 42 H 0.05 1.11 5.35 -51.93 -0.28 0.83 16 43 H 0.06 1.32 6.28 -51.93 -0.33 0.99 16 LS Contribution 354.94 15.07 5.35 5.35 Total: -1.00 -38.20 354.94 -9.75 -47.96 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -5.43 Total: -4.34 kcal Atomic # 6 Polarization: 20.11 SS G_CDS: -5.14 Total: 14.97 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -0.29 Total: -76.20 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 26.95 SS G_CDS: -4.34 Total: 22.61 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.20 -9.75 -47.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044261359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.755 kcal (2) G-P(sol) polarization free energy of solvation -38.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds