Wall clock time and date at job start Tue Mar 31 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.58286 * 2 1 4 4 C 1.53183 * 109.58589 * 239.71589 * 2 1 3 5 5 C 1.53040 * 109.31470 * 185.43506 * 4 2 1 6 6 H 1.09008 * 109.45786 * 301.35814 * 5 4 2 7 7 N 1.46500 * 109.46306 * 181.38833 * 5 4 2 8 8 C 1.36939 * 120.00240 * 155.00161 * 7 5 4 9 9 H 1.08003 * 119.99904 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99959 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99979 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99882 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47064 * 89.99775 * 12 10 8 14 14 H 1.48499 * 109.47428 * 209.99531 * 12 10 8 15 15 H 1.48500 * 109.47284 * 329.99919 * 12 10 8 16 16 C 1.53035 * 109.53786 * 61.36301 * 5 4 2 17 17 C 1.53190 * 109.31429 * 298.63925 * 16 5 4 18 18 N 1.46924 * 109.70328 * 120.35401 * 2 1 3 19 19 C 1.34781 * 120.63400 * 353.46771 * 18 2 1 20 20 O 1.21631 * 119.99474 * 5.35682 * 19 18 2 21 21 C 1.47306 * 120.00199 * 185.35923 * 19 18 2 22 22 C 1.39007 * 120.90949 * 29.53978 * 21 19 18 23 23 C 1.39709 * 119.29681 * 179.97438 * 22 21 19 24 24 C 1.35258 * 121.08203 * 0.02562 * 23 22 21 25 25 N 1.35719 * 121.56816 * 359.97438 * 24 23 22 26 26 N 1.40206 * 134.08629 * 179.97438 * 25 24 23 27 27 N 1.29015 * 106.96263 * 180.02562 * 26 25 24 28 28 N 1.28599 * 110.78596 * 0.02562 * 27 26 25 29 29 C 1.32046 * 110.21423 * 359.71485 * 28 27 26 30 30 H 1.08998 * 109.47479 * 183.73224 * 1 2 3 31 31 H 1.09009 * 109.47116 * 303.73022 * 1 2 3 32 32 H 1.09001 * 109.47442 * 63.72341 * 1 2 3 33 33 H 1.09002 * 109.50062 * 305.38917 * 4 2 1 34 34 H 1.09006 * 109.49979 * 65.44990 * 4 2 1 35 35 H 0.97003 * 119.99443 * 334.99976 * 7 5 4 36 36 H 0.96998 * 119.99774 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.49786 * 58.59046 * 16 5 4 38 38 H 1.09003 * 109.50185 * 178.68530 * 16 5 4 39 39 H 1.09006 * 109.58833 * 174.42080 * 17 16 5 40 40 H 1.08998 * 109.58744 * 294.69979 * 17 16 5 41 41 H 1.08004 * 120.34801 * 359.97438 * 22 21 19 42 42 H 1.07999 * 119.45876 * 179.97438 * 23 22 21 43 43 H 1.07989 * 119.21519 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5678 -0.8434 -1.1729 6 1 4.0045 0.1529 -1.1020 7 7 4.0654 -1.5096 -2.3790 8 6 5.3490 -1.2898 -2.8025 9 1 5.9944 -0.6250 -2.2476 10 6 5.8203 -1.9207 -3.9457 11 7 5.0336 -2.7304 -4.6222 12 14 7.5710 -1.6203 -4.5237 13 1 8.4763 -2.6186 -3.9000 14 1 7.6336 -1.7507 -6.0017 15 1 7.9949 -0.2530 -4.1290 16 6 3.9603 -1.6607 0.0599 17 6 3.4685 -0.9435 1.3210 18 7 2.0254 -0.6990 1.1936 19 6 1.1722 -1.1082 2.1534 20 8 -0.0274 -0.9877 1.9924 21 6 1.6925 -1.7013 3.3974 22 6 2.9354 -1.3325 3.8989 23 6 3.3957 -1.9160 5.0819 24 6 2.6526 -2.8319 5.7440 25 7 1.4341 -3.2207 5.2900 26 7 0.4647 -4.1236 5.7491 27 7 -0.5112 -4.0889 4.9060 28 7 -0.2645 -3.2576 3.9563 29 6 0.9132 -2.6899 4.1414 30 1 -0.3634 -1.0254 0.0669 31 1 -0.3634 0.5707 0.8547 32 1 -0.3634 0.4549 -0.9215 33 1 1.6049 -1.7246 -1.2921 34 1 1.7633 -0.1657 -2.1372 35 1 3.4856 -2.1064 -2.8776 36 1 5.3628 -3.1710 -5.4212 37 1 3.5037 -2.6488 0.0018 38 1 5.0449 -1.7625 0.0988 39 1 3.6576 -1.5683 2.1940 40 1 3.9938 0.0053 1.4302 41 1 3.5387 -0.6026 3.3796 42 1 4.3612 -1.6317 5.4737 43 1 3.0380 -3.2640 6.6556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044611282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:13 Heat of formation + Delta-G solvation = 166.326049 kcal Electronic energy + Delta-G solvation = -28440.463767 eV Core-core repulsion = 24525.856842 eV Total energy + Delta-G solvation = -3914.606925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.65295 -40.78816 -38.86122 -37.48906 -34.93434 -34.45580 -32.67155 -32.37791 -32.01616 -30.63233 -29.35532 -27.26098 -25.74644 -24.87373 -24.33783 -23.73766 -22.99855 -21.84899 -20.42853 -19.63640 -19.00502 -17.98600 -17.24954 -17.14549 -16.79687 -16.41576 -15.82017 -15.33577 -14.91947 -14.72448 -14.24299 -13.96157 -13.77810 -13.45936 -13.41995 -13.33790 -13.14549 -12.79039 -12.78252 -12.56022 -12.23341 -12.04342 -11.78848 -11.62509 -11.32589 -11.24971 -10.97601 -10.89774 -10.87928 -10.63277 -10.41851 -10.30417 -9.92853 -9.77744 -9.21994 -9.01798 -8.93052 -8.55793 -7.04905 -5.83634 -3.13511 -0.39743 0.10677 1.26692 1.83309 2.19530 2.64515 3.02374 3.21016 3.37185 3.42146 3.44833 3.55214 3.92486 4.00545 4.26649 4.50828 4.61299 4.78883 4.87508 4.94926 5.06172 5.09187 5.17666 5.19417 5.23270 5.36869 5.40751 5.44691 5.54021 5.70524 5.81911 5.89291 5.96270 6.06245 6.18232 6.25852 6.37380 6.40838 6.46467 6.70161 6.80409 6.95386 7.30179 7.61130 8.04021 8.08619 8.34204 9.45494 10.02771 10.37076 11.38721 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.003021 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.845619 B = 9266.695767 C = 9968.187534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.151 3.849 3 H 0.076 0.924 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.724 5.724 8 C -0.243 4.243 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.930 5.930 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 C -0.152 4.152 17 C 0.083 3.917 18 N -0.592 5.592 19 C 0.562 3.438 20 O -0.501 6.501 21 C -0.095 4.095 22 C -0.033 4.033 23 C -0.143 4.143 24 C 0.124 3.876 25 N -0.309 5.309 26 N -0.109 5.109 27 N -0.008 5.008 28 N -0.295 5.295 29 C 0.274 3.726 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.178 0.822 42 H 0.176 0.824 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 5.543 21.652 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.049 3.951 3 H 0.094 0.906 4 C -0.176 4.176 5 C 0.069 3.931 6 H 0.067 0.933 7 N -0.364 5.364 8 C -0.374 4.374 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.578 5.578 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.207 1.207 16 C -0.194 4.194 17 C -0.039 4.039 18 N -0.326 5.326 19 C 0.348 3.652 20 O -0.376 6.376 21 C -0.104 4.104 22 C -0.058 4.058 23 C -0.167 4.167 24 C -0.003 4.003 25 N -0.089 5.089 26 N -0.092 5.092 27 N -0.001 5.001 28 N -0.152 5.152 29 C 0.015 3.985 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.195 0.805 42 H 0.193 0.807 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.092 4.630 21.845 22.543 hybrid contribution 1.878 0.168 -0.482 1.946 sum -1.214 4.798 21.363 21.929 Atomic orbital electron populations 1.22239 0.92562 1.04040 1.00711 1.21381 0.95642 0.94895 0.83217 0.90648 1.22326 0.97517 1.01222 0.96520 1.20162 0.90935 0.94953 0.87081 0.93334 1.42436 1.13041 1.54337 1.26554 1.19208 0.89162 1.22413 1.06587 0.91151 1.24761 0.98149 0.99768 0.98144 1.69662 1.35398 1.33375 1.19390 0.86214 0.84543 0.77637 0.77899 1.21742 1.21771 1.20735 1.22716 1.01815 1.00212 0.94629 1.22582 0.79715 1.00867 1.00757 1.48048 1.07422 1.57089 1.20034 1.17456 0.86398 0.79151 0.82230 1.90954 1.14414 1.54022 1.78258 1.20419 0.93936 0.98153 0.97904 1.22516 0.92515 0.97097 0.93699 1.21076 1.02069 0.97580 0.95928 1.21786 0.81757 0.96227 1.00511 1.48980 1.14940 1.27194 1.17793 1.82805 0.94704 1.11369 1.20291 1.78042 1.15913 1.09508 0.96633 1.75251 1.11550 1.09645 1.18762 1.23599 0.91667 0.96087 0.87125 0.90803 0.91347 0.93495 0.91602 0.90353 0.78197 0.93421 0.92069 0.90378 0.89463 0.90531 0.80512 0.80671 0.79895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.60 37.16 0.28 -1.61 16 2 C 0.15 1.97 3.48 -67.60 -0.24 1.73 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.14 -2.13 4.84 -26.62 -0.13 -2.26 16 5 C 0.18 3.14 2.73 -67.89 -0.19 2.95 16 6 H 0.05 0.85 8.08 -51.92 -0.42 0.43 16 7 N -0.72 -16.94 5.12 -53.38 -0.27 -17.21 16 8 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 9 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 12 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 C -0.15 -2.25 5.66 -26.62 -0.15 -2.40 16 17 C 0.08 0.84 4.75 -3.71 -0.02 0.82 16 18 N -0.59 -7.20 2.97 -166.52 -0.49 -7.69 16 19 C 0.56 7.54 7.40 -12.57 -0.09 7.45 16 20 O -0.50 -8.30 12.14 5.25 0.06 -8.24 16 21 C -0.10 -1.04 5.64 -102.72 -0.58 -1.62 16 22 C -0.03 -0.20 7.53 -38.75 -0.29 -0.49 16 23 C -0.14 -0.49 9.92 -40.09 -0.40 -0.89 16 24 C 0.12 0.68 11.15 -16.89 -0.19 0.49 16 25 N -0.31 -3.35 3.94 -10.99 -0.04 -3.39 16 26 N -0.11 -1.46 13.99 60.35 0.84 -0.62 16 27 N -0.01 -0.13 13.36 60.35 0.81 0.68 16 28 N -0.30 -4.87 12.10 32.20 0.39 -4.49 16 29 C 0.27 3.66 7.86 -154.52 -1.21 2.44 16 30 H 0.07 1.17 6.74 -51.93 -0.35 0.82 16 31 H 0.07 0.96 6.77 -51.92 -0.35 0.61 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.38 9.85 7.80 -40.82 -0.32 9.53 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.09 0.67 4.06 -51.93 -0.21 0.46 16 40 H 0.08 0.60 8.04 -51.93 -0.42 0.19 16 41 H 0.18 0.65 5.45 -52.48 -0.29 0.36 16 42 H 0.18 -0.14 8.06 -52.49 -0.42 -0.57 16 43 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -35.22 349.58 -6.47 -41.69 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.28 Total: 4.45 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -3.45 Total: -0.25 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 1.95 Total: -59.31 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.06 Total: -8.24 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.22 -6.47 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044611282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.015 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds