Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.58879 * 2 1 4 4 C 1.53192 * 109.58432 * 239.72020 * 2 1 3 5 5 C 1.53046 * 109.31280 * 294.84730 * 4 2 1 6 6 H 1.09001 * 109.45920 * 58.64363 * 5 4 2 7 7 N 1.46500 * 109.46087 * 178.61320 * 5 4 2 8 8 C 1.36933 * 120.00076 * 205.02718 * 7 5 4 9 9 H 1.07999 * 120.00064 * 0.02562 * 8 7 5 10 10 C 1.38818 * 120.00108 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99907 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99854 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47279 * 59.99987 * 12 10 8 14 14 H 1.48500 * 109.47066 * 300.00099 * 12 10 8 15 15 H 1.48502 * 109.46891 * 180.02562 * 12 10 8 16 16 C 1.53037 * 109.52692 * 298.62608 * 5 4 2 17 17 C 1.53192 * 109.31154 * 61.38693 * 16 5 4 18 18 N 1.46928 * 109.58900 * 120.43312 * 2 1 3 19 19 C 1.34773 * 120.62952 * 246.15212 * 18 2 1 20 20 O 1.21630 * 120.00012 * 354.66227 * 19 18 2 21 21 C 1.47318 * 120.00244 * 174.65932 * 19 18 2 22 22 C 1.39000 * 120.90232 * 322.47248 * 21 19 18 23 23 C 1.39718 * 119.29410 * 179.97438 * 22 21 19 24 24 C 1.35261 * 121.07706 * 0.02562 * 23 22 21 25 25 N 1.35713 * 121.57159 * 359.97438 * 24 23 22 26 26 N 1.40209 * 134.08487 * 179.97438 * 25 24 23 27 27 N 1.29018 * 106.95916 * 180.02562 * 26 25 24 28 28 N 1.28594 * 110.78749 * 359.97438 * 27 26 25 29 29 C 1.32046 * 110.21585 * 359.71733 * 28 27 26 30 30 H 1.09000 * 109.47555 * 180.28103 * 1 2 3 31 31 H 1.09008 * 109.46906 * 300.28149 * 1 2 3 32 32 H 1.08996 * 109.47391 * 60.27844 * 1 2 3 33 33 H 1.08994 * 109.50209 * 174.89583 * 4 2 1 34 34 H 1.09000 * 109.50053 * 54.79370 * 4 2 1 35 35 H 0.97008 * 120.00071 * 25.02825 * 7 5 4 36 36 H 0.97002 * 119.99742 * 0.02562 * 11 10 8 37 37 H 1.08994 * 109.49789 * 181.32301 * 16 5 4 38 38 H 1.08994 * 109.49615 * 301.42110 * 16 5 4 39 39 H 1.08998 * 109.58923 * 185.56620 * 17 16 5 40 40 H 1.08999 * 109.71587 * 65.19840 * 17 16 5 41 41 H 1.08009 * 120.35533 * 359.97438 * 22 21 19 42 42 H 1.07999 * 119.46230 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.20840 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7277 -1.2464 5 6 1.6413 -2.2026 -1.1730 6 1 0.5564 -2.2801 -1.1021 7 7 2.1021 -2.8947 -2.3792 8 6 1.4644 -4.0299 -2.8030 9 1 0.6214 -4.4149 -2.2484 10 6 1.9007 -4.6855 -3.9463 11 7 2.9270 -4.2156 -4.6231 12 14 1.0302 -6.2337 -4.5248 13 1 -0.3937 -5.9238 -4.8103 14 1 1.1080 -7.2708 -3.4647 15 1 1.6847 -6.7378 -5.7588 16 6 2.2802 -2.8463 0.0596 17 6 1.7692 -2.1428 1.3209 18 7 2.0226 -0.7012 1.1935 19 6 2.6945 -0.0347 2.1530 20 8 2.9831 1.1359 1.9920 21 6 3.0794 -0.7238 3.3969 22 6 2.2344 -1.6563 3.9872 23 6 2.6334 -2.2904 5.1665 24 6 3.8258 -2.0107 5.7406 25 7 4.6811 -1.1074 5.1982 26 7 5.9477 -0.6254 5.5576 27 7 6.2905 0.2370 4.6612 28 7 5.3739 0.3545 3.7669 29 6 4.3640 -0.4511 4.0400 30 1 -0.3634 -1.0276 0.0050 31 1 -0.3633 0.5182 0.8875 32 1 -0.3634 0.5095 -0.8924 33 1 3.1295 -0.6487 -1.2923 34 1 1.6073 -0.2757 -2.1372 35 1 2.8590 -2.5488 -2.8777 36 1 3.3787 -3.4114 -4.3228 37 1 2.0127 -3.9022 0.0986 38 1 3.3641 -2.7470 0.0013 39 1 2.2944 -2.5304 2.1938 40 1 0.6989 -2.3173 1.4311 41 1 1.2794 -1.8883 3.5391 42 1 1.9788 -3.0150 5.6278 43 1 4.1037 -2.5184 6.6525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044611295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = 143.754850 kcal Electronic energy + Delta-G solvation = -28452.574341 eV Core-core repulsion = 24536.988655 eV Total energy + Delta-G solvation = -3915.585686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.68939 -40.68629 -38.89360 -37.74981 -34.98438 -34.50974 -32.67935 -32.39433 -32.03069 -30.71792 -29.25425 -27.36875 -25.92607 -24.84791 -24.14695 -23.68869 -23.16334 -21.97239 -20.89663 -19.37573 -18.61770 -18.09923 -17.38944 -17.27050 -17.06162 -16.38213 -16.19347 -15.26135 -14.81755 -14.51424 -14.27070 -14.13494 -13.77862 -13.69312 -13.65211 -13.44323 -13.09361 -12.97242 -12.81931 -12.71998 -12.65558 -12.04372 -11.95270 -11.60783 -11.38772 -11.29372 -11.04133 -10.89548 -10.66923 -10.63035 -10.47492 -10.10930 -10.01786 -9.95795 -9.23013 -9.06928 -8.96033 -8.69642 -7.11708 -6.15932 -3.17004 -0.42225 0.07020 1.22586 1.79861 2.15334 2.57185 2.91864 3.16779 3.45998 3.49225 3.51176 3.67358 3.88893 3.96877 4.22648 4.58405 4.60003 4.76399 4.82852 4.89400 5.01581 5.04285 5.07420 5.12067 5.17074 5.29866 5.35131 5.41021 5.52529 5.58719 5.65027 5.75189 5.85539 5.89697 5.99352 6.12391 6.17581 6.29394 6.32948 6.44718 6.71701 6.87696 7.22260 7.72405 7.93255 8.04684 8.69243 9.15665 10.02191 10.17165 11.32120 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.003033 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.155596 B = 9228.122573 C = 9660.971671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.100 0.900 4 C -0.136 4.136 5 C 0.185 3.815 6 H 0.054 0.946 7 N -0.735 5.735 8 C -0.334 4.334 9 H 0.064 0.936 10 C -0.044 4.044 11 N -0.942 5.942 12 Si 1.079 2.921 13 H -0.295 1.295 14 H -0.295 1.295 15 H -0.285 1.285 16 C -0.152 4.152 17 C 0.092 3.908 18 N -0.591 5.591 19 C 0.565 3.435 20 O -0.511 6.511 21 C -0.092 4.092 22 C -0.025 4.025 23 C -0.142 4.142 24 C 0.125 3.875 25 N -0.308 5.308 26 N -0.107 5.107 27 N -0.006 5.006 28 N -0.298 5.298 29 C 0.272 3.728 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.367 0.633 36 H 0.256 0.744 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.170 0.830 42 H 0.177 0.823 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 3.004 22.325 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.118 0.882 4 C -0.175 4.175 5 C 0.075 3.925 6 H 0.072 0.928 7 N -0.377 5.377 8 C -0.465 4.465 9 H 0.082 0.918 10 C -0.242 4.242 11 N -0.587 5.587 12 Si 0.909 3.091 13 H -0.222 1.222 14 H -0.223 1.223 15 H -0.210 1.210 16 C -0.193 4.193 17 C -0.030 4.030 18 N -0.324 5.324 19 C 0.351 3.649 20 O -0.387 6.387 21 C -0.101 4.101 22 C -0.050 4.050 23 C -0.166 4.166 24 C -0.002 4.002 25 N -0.088 5.088 26 N -0.090 5.090 27 N 0.001 4.999 28 N -0.155 5.155 29 C 0.014 3.986 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.200 0.800 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.188 0.812 42 H 0.194 0.806 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.748 3.065 21.378 22.112 hybrid contribution -0.444 0.531 1.238 1.418 sum -5.191 3.596 22.616 23.481 Atomic orbital electron populations 1.22160 0.94599 1.02887 1.02251 1.21250 0.94089 0.97250 0.83249 0.88194 1.22250 1.01517 0.97253 0.96498 1.20128 0.96862 0.88903 0.86653 0.92837 1.42451 1.37793 1.30151 1.27282 1.19996 1.12875 1.03297 1.10314 0.91760 1.25767 0.99383 1.04382 0.94624 1.70877 1.22098 1.24332 1.41350 0.83263 0.74726 0.74897 0.76173 1.22235 1.22296 1.21041 1.22680 1.01271 1.00635 0.94696 1.22295 1.01033 0.79374 1.00336 1.48096 1.54763 1.09467 1.20096 1.17426 0.78749 0.86420 0.82307 1.90875 1.53205 1.15743 1.78834 1.20247 0.90514 1.00874 0.98456 1.22222 0.99749 0.89819 0.93218 1.21053 0.95830 1.02944 0.96757 1.21796 0.88689 0.90054 0.99659 1.48977 1.14678 1.27533 1.17624 1.82813 0.90985 1.14508 1.20699 1.78038 1.18165 1.07272 0.96451 1.75236 0.98634 1.20897 1.20714 1.23590 0.96360 0.91968 0.86692 0.91550 0.92671 0.91014 0.91778 0.90373 0.79996 0.93282 0.90388 0.92269 0.90183 0.90650 0.81229 0.80610 0.79801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.02 37.16 0.34 -1.42 16 2 C 0.14 1.90 3.21 -67.60 -0.22 1.68 16 3 H 0.10 1.42 7.00 -51.93 -0.36 1.06 16 4 C -0.14 -2.13 5.02 -26.61 -0.13 -2.26 16 5 C 0.18 3.28 2.52 -67.89 -0.17 3.10 16 6 H 0.05 0.95 6.44 -51.93 -0.33 0.62 16 7 N -0.74 -17.28 5.12 -53.38 -0.27 -17.56 16 8 C -0.33 -8.83 9.93 -15.06 -0.15 -8.98 16 9 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 10 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 11 N -0.94 -28.49 13.70 55.49 0.76 -27.73 16 12 Si 1.08 24.90 29.92 -169.99 -5.09 19.81 16 13 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.30 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 C -0.15 -2.32 5.66 -26.61 -0.15 -2.47 16 17 C 0.09 0.98 4.44 -3.71 -0.02 0.96 16 18 N -0.59 -7.35 2.68 -166.52 -0.45 -7.80 16 19 C 0.57 7.86 7.39 -12.57 -0.09 7.77 16 20 O -0.51 -9.06 16.38 5.25 0.09 -8.98 16 21 C -0.09 -1.02 5.39 -102.72 -0.55 -1.58 16 22 C -0.02 -0.15 7.47 -38.75 -0.29 -0.44 16 23 C -0.14 -0.48 9.92 -40.09 -0.40 -0.87 16 24 C 0.13 0.67 11.15 -16.90 -0.19 0.49 16 25 N -0.31 -3.36 3.94 -10.99 -0.04 -3.40 16 26 N -0.11 -1.45 13.99 60.35 0.84 -0.60 16 27 N -0.01 -0.10 13.36 60.35 0.81 0.71 16 28 N -0.30 -5.01 12.24 32.20 0.39 -4.61 16 29 C 0.27 3.70 7.91 -154.52 -1.22 2.47 16 30 H 0.07 0.72 5.72 -51.93 -0.30 0.42 16 31 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.37 9.17 6.63 -40.82 -0.27 8.90 16 36 H 0.26 7.65 6.77 -40.82 -0.28 7.38 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 0.67 4.55 -51.93 -0.24 0.43 16 40 H 0.08 0.64 7.44 -51.93 -0.39 0.25 16 41 H 0.17 0.60 6.33 -52.48 -0.33 0.27 16 42 H 0.18 -0.17 8.06 -52.49 -0.42 -0.59 16 43 H 0.18 0.29 8.06 -52.48 -0.42 -0.13 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -36.95 350.88 -6.10 -43.05 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.09 Total: 4.68 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.34 Total: -2.86 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 2.04 Total: -60.99 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.09 Total: 19.81 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.95 -6.10 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044611295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.805 kcal (2) G-P(sol) polarization free energy of solvation -36.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds