Wall clock time and date at job start Tue Mar 31 2020 05:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.69770 * 2 1 4 4 C 1.53193 * 109.58350 * 120.35081 * 2 1 3 5 5 C 1.53040 * 109.30904 * 174.42533 * 4 2 1 6 6 H 1.08992 * 109.46368 * 58.65503 * 5 4 2 7 7 N 1.46501 * 109.45820 * 178.61545 * 5 4 2 8 8 C 1.36940 * 119.99930 * 204.99728 * 7 5 4 9 9 H 1.08001 * 119.99828 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99898 * 179.97438 * 8 7 5 11 11 N 1.31623 * 119.99775 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00284 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.46967 * 89.99659 * 12 10 8 14 14 H 1.48499 * 109.47219 * 209.99952 * 12 10 8 15 15 H 1.48506 * 109.47129 * 329.99760 * 12 10 8 16 16 C 1.53042 * 109.53812 * 298.63385 * 5 4 2 17 17 C 1.52752 * 109.38310 * 61.24200 * 16 5 4 18 18 N 1.46924 * 109.01018 * 305.58645 * 17 16 5 19 19 C 1.34771 * 120.63510 * 233.58386 * 18 17 16 20 20 O 1.21623 * 120.00109 * 184.00640 * 19 18 17 21 21 C 1.47311 * 120.00036 * 4.00486 * 19 18 17 22 22 C 1.39008 * 120.90653 * 325.16582 * 21 19 18 23 23 C 1.39712 * 119.29236 * 179.97438 * 22 21 19 24 24 C 1.35262 * 121.08370 * 359.97438 * 23 22 21 25 25 N 1.35716 * 121.57004 * 0.03629 * 24 23 22 26 26 N 1.40211 * 134.09328 * 179.97438 * 25 24 23 27 27 N 1.29027 * 106.96181 * 179.97438 * 26 25 24 28 28 N 1.28592 * 110.78259 * 0.02562 * 27 26 25 29 29 C 1.32043 * 110.21483 * 359.97438 * 28 27 26 30 30 H 1.08992 * 109.47118 * 173.18684 * 1 2 3 31 31 H 1.08995 * 109.47059 * 293.18987 * 1 2 3 32 32 H 1.09000 * 109.47028 * 53.18787 * 1 2 3 33 33 H 1.09000 * 109.49512 * 294.37212 * 4 2 1 34 34 H 1.08999 * 109.50015 * 54.44151 * 4 2 1 35 35 H 0.97000 * 120.00233 * 24.99933 * 7 5 4 36 36 H 0.96999 * 119.99730 * 180.02562 * 11 10 8 37 37 H 1.08996 * 109.50025 * 181.32398 * 16 5 4 38 38 H 1.09001 * 109.49406 * 301.41677 * 16 5 4 39 39 H 1.09000 * 109.51296 * 185.70878 * 17 16 5 40 40 H 1.09006 * 109.43450 * 65.42651 * 17 16 5 41 41 H 1.07998 * 120.35266 * 359.69902 * 22 21 19 42 42 H 1.07998 * 119.46078 * 179.97438 * 23 22 21 43 43 H 1.07993 * 119.21534 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5675 -0.8478 1.1703 6 1 4.0061 0.1474 1.0994 7 7 4.0651 -1.5155 2.3756 8 6 5.3497 -1.2985 2.7976 9 1 5.9957 -0.6347 2.2422 10 6 5.8210 -1.9307 3.9400 11 7 7.0555 -1.7217 4.3459 12 14 4.7034 -3.0782 4.9011 13 1 4.8456 -4.4607 4.3780 14 1 5.0824 -3.0507 6.3367 15 1 3.2937 -2.6353 4.7528 16 6 3.9569 -1.6656 -0.0633 17 6 3.4645 -0.9520 -1.3209 18 7 2.0226 -0.6996 -1.1944 19 6 1.1675 -1.1071 -2.1531 20 8 -0.0137 -0.8287 -2.0726 21 6 1.6634 -1.8896 -3.2984 22 6 2.9237 -1.6508 -3.8341 23 6 3.3604 -2.4134 -4.9202 24 6 2.5779 -3.3778 -5.4561 25 7 1.3412 -3.6439 -4.9646 26 7 0.3320 -4.5562 -5.3040 27 7 -0.6440 -4.3605 -4.4830 28 7 -0.3621 -3.4174 -3.6556 29 6 0.8438 -2.9393 -3.9023 30 1 -0.3633 -1.0203 -0.1219 31 1 -0.3633 0.4047 0.9446 32 1 -0.3633 0.6158 -0.8228 33 1 1.7660 -0.1666 2.1368 34 1 1.6025 -1.7250 1.2918 35 1 3.4848 -2.1114 2.8746 36 1 7.3850 -2.1638 5.1440 37 1 5.0412 -1.7696 -0.1034 38 1 3.4983 -2.6527 -0.0050 39 1 3.6504 -1.5799 -2.1922 40 1 3.9930 -0.0049 -1.4309 41 1 3.5567 -0.8810 -3.4180 42 1 4.3389 -2.2299 -5.3389 43 1 2.9459 -3.9495 -6.2952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044611298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:22 Heat of formation + Delta-G solvation = 173.107830 kcal Electronic energy + Delta-G solvation = -28559.908827 eV Core-core repulsion = 24645.595982 eV Total energy + Delta-G solvation = -3914.312845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -43.68645 -40.86875 -38.90267 -37.61816 -35.03747 -34.57661 -32.73780 -32.41043 -32.05943 -30.71204 -29.86233 -27.45647 -25.79961 -24.95639 -24.36586 -23.77976 -22.79298 -21.85936 -20.44883 -19.74884 -19.10796 -18.03390 -17.65747 -17.20500 -16.87837 -16.51010 -15.93589 -15.37227 -14.97700 -14.70581 -14.26973 -14.24185 -13.75165 -13.56626 -13.47909 -13.42446 -13.05087 -12.82296 -12.79467 -12.62041 -12.32300 -12.10846 -11.98326 -11.84005 -11.37931 -11.29328 -11.09329 -11.02493 -10.95483 -10.70343 -10.43634 -10.36628 -10.01100 -9.67816 -9.32146 -9.04433 -8.95503 -8.64128 -7.37109 -5.85813 -3.21976 -0.41321 0.07503 1.23500 1.80178 2.15932 2.56686 2.95656 3.17157 3.32393 3.36243 3.41100 3.52551 3.90485 3.96087 4.24329 4.52031 4.58469 4.72600 4.83980 4.89602 4.90841 5.02797 5.06611 5.14601 5.18138 5.28077 5.35776 5.41302 5.47332 5.60744 5.70045 5.84599 5.86703 5.94471 5.95321 6.14828 6.24240 6.28406 6.34613 6.59468 6.68735 6.83154 7.23462 7.88867 7.97355 8.04943 8.33292 9.11222 9.84314 10.03631 11.32196 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.003241 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.051850 B = 8636.948220 C = 9060.832439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.152 3.848 3 H 0.078 0.922 4 C -0.141 4.141 5 C 0.184 3.816 6 H 0.058 0.942 7 N -0.748 5.748 8 C -0.247 4.247 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.883 3.117 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.153 4.153 17 C 0.076 3.924 18 N -0.592 5.592 19 C 0.563 3.437 20 O -0.502 6.502 21 C -0.094 4.094 22 C -0.036 4.036 23 C -0.142 4.142 24 C 0.124 3.876 25 N -0.308 5.308 26 N -0.108 5.108 27 N -0.008 5.008 28 N -0.298 5.298 29 C 0.273 3.727 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.182 0.818 42 H 0.177 0.823 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.835 2.052 -21.161 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.049 3.951 3 H 0.096 0.904 4 C -0.180 4.180 5 C 0.074 3.926 6 H 0.076 0.924 7 N -0.390 5.390 8 C -0.376 4.376 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.713 3.287 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.194 4.194 17 C -0.046 4.046 18 N -0.326 5.326 19 C 0.349 3.651 20 O -0.378 6.378 21 C -0.103 4.103 22 C -0.061 4.061 23 C -0.165 4.165 24 C -0.003 4.003 25 N -0.088 5.088 26 N -0.091 5.091 27 N -0.001 5.001 28 N -0.155 5.155 29 C 0.015 3.985 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.198 0.802 42 H 0.194 0.806 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.569 1.279 -21.279 22.621 hybrid contribution 0.414 -0.679 0.736 1.083 sum -7.155 0.600 -20.544 21.762 Atomic orbital electron populations 1.22228 0.92544 1.03969 1.00958 1.21360 0.95662 0.95119 0.82933 0.90378 1.22374 0.97510 1.01173 0.96931 1.20138 0.90767 0.95358 0.86350 0.92402 1.42799 1.13103 1.55092 1.27957 1.19044 0.87444 1.23592 1.07542 0.89136 1.24668 0.96069 1.00055 0.98134 1.69696 1.15084 1.47023 1.26168 0.86581 0.80584 0.81542 0.79989 1.21128 1.21686 1.20265 1.22591 1.02302 0.99921 0.94606 1.22659 0.79696 1.01341 1.00948 1.48078 1.07499 1.56966 1.20029 1.17431 0.86038 0.79884 0.81715 1.90939 1.15699 1.55330 1.75830 1.20376 0.93296 0.96773 0.99886 1.22514 0.92751 0.98269 0.92600 1.21088 1.01905 0.95967 0.97541 1.21794 0.81094 0.98016 0.99444 1.48962 1.13890 1.23993 1.21945 1.82815 0.92839 1.11590 1.21844 1.78036 1.16821 1.07225 0.98006 1.75221 1.10229 1.09012 1.21021 1.23569 0.91768 0.94716 0.88484 0.91329 0.93407 0.90729 0.90233 0.91762 0.80586 0.92990 0.89824 0.92241 0.88764 0.90199 0.80158 0.80587 0.79853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 7.61 37.16 0.28 -1.55 16 2 C 0.15 1.89 3.49 -67.60 -0.24 1.65 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.14 -2.04 4.84 -26.61 -0.13 -2.17 16 5 C 0.18 3.06 2.73 -67.89 -0.19 2.88 16 6 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 7 N -0.75 -16.34 4.93 -53.39 -0.26 -16.61 16 8 C -0.25 -6.48 10.41 -15.06 -0.16 -6.64 16 9 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 10 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.16 13.97 55.49 0.78 -27.39 16 12 Si 0.88 21.50 27.74 -169.99 -4.71 16.78 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 16 C -0.15 -2.14 5.64 -26.84 -0.15 -2.29 16 17 C 0.08 0.73 5.02 -3.94 -0.02 0.71 16 18 N -0.59 -6.88 2.98 -166.78 -0.50 -7.37 16 19 C 0.56 7.26 7.28 -12.57 -0.09 7.17 16 20 O -0.50 -8.01 12.41 5.26 0.07 -7.95 16 21 C -0.09 -1.00 5.68 -102.71 -0.58 -1.58 16 22 C -0.04 -0.21 7.55 -38.75 -0.29 -0.50 16 23 C -0.14 -0.46 9.92 -40.09 -0.40 -0.86 16 24 C 0.12 0.66 11.15 -16.89 -0.19 0.47 16 25 N -0.31 -3.27 3.94 -10.99 -0.04 -3.32 16 26 N -0.11 -1.43 13.99 60.35 0.84 -0.58 16 27 N -0.01 -0.12 13.36 60.35 0.81 0.68 16 28 N -0.30 -4.81 12.21 32.20 0.39 -4.41 16 29 C 0.27 3.56 7.89 -154.52 -1.22 2.35 16 30 H 0.07 1.04 6.81 -51.93 -0.35 0.69 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.02 6.68 -51.93 -0.35 0.67 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.36 8.01 5.66 -40.82 -0.23 7.78 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.66 3.49 -52.49 -0.18 0.48 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.18 0.60 5.50 -52.49 -0.29 0.31 16 42 H 0.18 -0.16 8.06 -52.49 -0.42 -0.58 16 43 H 0.18 0.30 8.06 -52.49 -0.42 -0.13 16 LS Contribution 346.66 15.07 5.22 5.22 Total: -1.00 -36.00 346.66 -6.09 -42.09 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.22 Total: 3.12 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -3.46 Total: -0.27 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 2.02 Total: -59.00 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.07 Total: -7.95 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.00 -6.09 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044611298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.199 kcal (2) G-P(sol) polarization free energy of solvation -35.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds