Wall clock time and date at job start Tue Mar 31 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.69776 * 2 1 4 4 C 1.53194 * 109.58699 * 120.35911 * 2 1 3 5 5 C 1.53037 * 109.31129 * 65.15054 * 4 2 1 6 6 H 1.08991 * 109.45410 * 301.35629 * 5 4 2 7 7 N 1.46506 * 109.45716 * 181.38102 * 5 4 2 8 8 C 1.36935 * 119.99302 * 154.93168 * 7 5 4 9 9 H 1.08001 * 120.00877 * 359.73409 * 8 7 5 10 10 C 1.38815 * 119.99415 * 179.72807 * 8 7 5 11 11 N 1.31618 * 120.00290 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99890 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47462 * 89.99969 * 12 10 8 14 14 H 1.48498 * 109.47014 * 210.00265 * 12 10 8 15 15 H 1.48508 * 109.46960 * 329.99710 * 12 10 8 16 16 C 1.53039 * 109.53628 * 61.36877 * 5 4 2 17 17 C 1.53191 * 109.31349 * 298.63205 * 16 5 4 18 18 N 1.46925 * 109.58491 * 239.65142 * 2 1 3 19 19 C 1.34771 * 120.63052 * 113.80392 * 18 2 1 20 20 O 1.21623 * 120.00449 * 355.82029 * 19 18 2 21 21 C 1.47318 * 119.99860 * 175.83046 * 19 18 2 22 22 C 1.39000 * 120.91036 * 53.73017 * 21 19 18 23 23 C 1.39724 * 119.29633 * 180.02562 * 22 21 19 24 24 C 1.35263 * 121.07665 * 0.02562 * 23 22 21 25 25 N 1.35716 * 121.57407 * 0.02562 * 24 23 22 26 26 N 1.40204 * 134.09071 * 179.97438 * 25 24 23 27 27 N 1.29020 * 106.96467 * 180.02562 * 26 25 24 28 28 N 1.28589 * 110.78103 * 0.02562 * 27 26 25 29 29 C 1.32044 * 110.22369 * 359.71532 * 28 27 26 30 30 H 1.08999 * 109.46573 * 180.35485 * 1 2 3 31 31 H 1.08994 * 109.46862 * 300.34791 * 1 2 3 32 32 H 1.08997 * 109.46853 * 60.35521 * 1 2 3 33 33 H 1.08994 * 109.49380 * 305.20237 * 4 2 1 34 34 H 1.08994 * 109.49648 * 185.10679 * 4 2 1 35 35 H 0.96995 * 120.00325 * 334.66111 * 7 5 4 36 36 H 0.97000 * 120.00153 * 180.02562 * 11 10 8 37 37 H 1.09006 * 109.50286 * 58.58080 * 16 5 4 38 38 H 1.09004 * 109.50044 * 178.67715 * 16 5 4 39 39 H 1.08996 * 109.59104 * 174.42373 * 17 16 5 40 40 H 1.09000 * 109.58650 * 294.70645 * 17 16 5 41 41 H 1.08002 * 120.35243 * 0.02845 * 22 21 19 42 42 H 1.07997 * 119.46448 * 180.02562 * 23 22 21 43 43 H 1.07998 * 119.21146 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2454 5 6 1.6415 -2.2041 1.1700 6 1 0.5566 -2.2814 1.0990 7 7 2.1025 -2.8979 2.3752 8 6 1.4642 -4.0333 2.7979 9 1 0.6183 -4.4149 2.2454 10 6 1.9045 -4.6938 3.9367 11 7 2.9351 -4.2286 4.6103 12 14 1.0344 -6.2430 4.5130 13 1 1.6662 -7.4296 3.8822 14 1 1.1427 -6.3512 5.9901 15 1 -0.3978 -6.1798 4.1251 16 6 2.2801 -2.8463 -0.0636 17 6 1.7693 -2.1409 -1.3239 18 7 2.0226 -0.6994 -1.1946 19 6 2.6937 -0.0314 -2.1535 20 8 2.8309 1.1743 -2.0723 21 6 3.2610 -0.7616 -3.3004 22 6 2.4670 -1.5951 -4.0796 23 6 3.0402 -2.2720 -5.1592 24 6 4.3522 -2.1291 -5.4559 25 7 5.1636 -1.3267 -4.7212 26 7 6.5233 -0.9913 -4.7872 27 7 6.7563 -0.1719 -3.8182 28 7 5.6861 0.0497 -3.1407 29 6 4.6741 -0.6275 -3.6515 30 1 -0.3632 -1.0277 0.0064 31 1 -0.3633 0.5192 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 1.6075 -0.2786 2.1367 34 1 3.1297 -0.6504 1.2913 35 1 2.8622 -2.5553 2.8714 36 1 3.2430 -4.6904 5.4058 37 1 3.3641 -2.7473 -0.0055 38 1 2.0125 -3.9022 -0.1039 39 1 2.2945 -2.5273 -2.1973 40 1 0.6993 -2.3176 -1.4332 41 1 1.4182 -1.7181 -3.8530 42 1 2.4258 -2.9199 -5.7667 43 1 4.7637 -2.6663 -6.2975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044611300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:27 Heat of formation + Delta-G solvation = 138.866745 kcal Electronic energy + Delta-G solvation = -28475.897247 eV Core-core repulsion = 24560.099597 eV Total energy + Delta-G solvation = -3915.797650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -43.65285 -40.59001 -38.85996 -37.68259 -34.75563 -34.38613 -32.55288 -32.39645 -31.89393 -30.71456 -29.39700 -27.39541 -25.88468 -24.77654 -24.29474 -23.69386 -23.07222 -21.87943 -20.78108 -19.32197 -18.51011 -18.02298 -17.41690 -17.10787 -17.02713 -16.38941 -16.09193 -15.10774 -14.92957 -14.35260 -14.14162 -14.05840 -13.74065 -13.63628 -13.47611 -13.40132 -12.94129 -12.88576 -12.78749 -12.68161 -12.59507 -11.93518 -11.83488 -11.62756 -11.34735 -11.27928 -11.00216 -10.92805 -10.84496 -10.61464 -10.49360 -10.25314 -10.06901 -9.78858 -9.68685 -9.02701 -8.93577 -8.65456 -7.03177 -5.82022 -3.11818 -0.33818 0.10660 1.25508 1.83366 2.21725 2.53649 2.90578 3.19583 3.38279 3.43127 3.45824 3.55653 3.94215 4.01258 4.28235 4.52400 4.62915 4.84016 4.88147 4.94099 5.06893 5.10191 5.16017 5.20153 5.22793 5.36979 5.43838 5.45956 5.53373 5.66409 5.73548 5.83406 5.89456 5.97834 6.09730 6.21329 6.29526 6.38875 6.45085 6.53057 6.80720 6.97107 7.27515 7.62570 7.95262 8.07452 8.35788 9.47072 10.04609 10.38877 11.40350 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.003195 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.677256 B = 8761.891399 C = 9294.732193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.099 0.901 4 C -0.135 4.135 5 C 0.180 3.820 6 H 0.053 0.947 7 N -0.724 5.724 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.930 5.930 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 C -0.152 4.152 17 C 0.096 3.904 18 N -0.588 5.588 19 C 0.569 3.431 20 O -0.516 6.516 21 C -0.085 4.085 22 C -0.027 4.027 23 C -0.139 4.139 24 C 0.121 3.879 25 N -0.306 5.306 26 N -0.107 5.107 27 N -0.005 5.005 28 N -0.302 5.302 29 C 0.270 3.730 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.167 0.833 42 H 0.176 0.824 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 3.506 -22.488 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 H 0.117 0.883 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.071 0.929 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.578 5.578 12 Si 0.736 3.264 13 H -0.218 1.218 14 H -0.218 1.218 15 H -0.207 1.207 16 C -0.194 4.194 17 C -0.027 4.027 18 N -0.321 5.321 19 C 0.354 3.646 20 O -0.392 6.392 21 C -0.094 4.094 22 C -0.052 4.052 23 C -0.163 4.163 24 C -0.006 4.006 25 N -0.086 5.086 26 N -0.090 5.090 27 N 0.002 4.998 28 N -0.159 5.159 29 C 0.012 3.988 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.185 0.815 42 H 0.193 0.807 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.408 4.540 -22.248 22.960 hybrid contribution -0.804 -1.466 0.213 1.686 sum -4.212 3.074 -22.035 22.643 Atomic orbital electron populations 1.22148 0.94632 1.02876 1.02176 1.21288 0.94199 0.97187 0.83221 0.88310 1.22240 1.01640 0.97215 0.96329 1.20187 0.96779 0.89128 0.86973 0.92942 1.42442 1.37723 1.29492 1.26727 1.19205 1.10072 1.01230 1.06837 0.91174 1.24755 0.98395 0.99423 0.98205 1.69661 1.27252 1.41189 1.19721 0.86224 0.78889 0.83349 0.77892 1.21761 1.21768 1.20735 1.22708 1.01381 1.00543 0.94738 1.22128 1.01108 0.79240 1.00220 1.48141 1.54313 1.09665 1.19957 1.17415 0.78728 0.86778 0.81702 1.90859 1.58469 1.13265 1.76557 1.20223 0.87621 1.01480 1.00088 1.22004 1.01260 0.90162 0.91806 1.21023 0.93276 1.02564 0.99399 1.21770 0.89924 0.92479 0.96397 1.48948 1.09410 1.29440 1.20783 1.82812 0.87172 1.18376 1.20614 1.78027 1.18116 1.05382 0.98252 1.75187 0.93980 1.23047 1.23719 1.23572 0.95671 0.92195 0.87378 0.91538 0.91059 0.92726 0.90215 0.91656 0.78222 0.93431 0.92211 0.90493 0.90640 0.90673 0.81546 0.80677 0.79850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.03 37.16 0.34 -1.44 16 2 C 0.14 1.92 3.20 -67.60 -0.22 1.70 16 3 H 0.10 1.42 7.03 -51.93 -0.36 1.06 16 4 C -0.14 -2.14 5.02 -26.61 -0.13 -2.27 16 5 C 0.18 3.19 2.52 -67.89 -0.17 3.02 16 6 H 0.05 0.92 6.43 -51.93 -0.33 0.59 16 7 N -0.72 -17.13 5.12 -53.39 -0.27 -17.40 16 8 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 9 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 10 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 11 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 12 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C -0.15 -2.35 5.66 -26.61 -0.15 -2.51 16 17 C 0.10 1.05 5.13 -3.71 -0.02 1.03 16 18 N -0.59 -7.45 2.68 -166.51 -0.45 -7.89 16 19 C 0.57 7.92 7.26 -12.57 -0.09 7.83 16 20 O -0.52 -9.04 16.53 5.26 0.09 -8.96 16 21 C -0.09 -0.96 5.07 -102.71 -0.52 -1.48 16 22 C -0.03 -0.16 7.54 -38.74 -0.29 -0.45 16 23 C -0.14 -0.48 9.92 -40.09 -0.40 -0.88 16 24 C 0.12 0.68 11.15 -16.89 -0.19 0.49 16 25 N -0.31 -3.41 3.94 -10.99 -0.04 -3.45 16 26 N -0.11 -1.47 13.99 60.35 0.84 -0.63 16 27 N 0.00 -0.08 13.36 60.35 0.81 0.73 16 28 N -0.30 -5.13 12.24 32.20 0.39 -4.74 16 29 C 0.27 3.71 8.03 -154.51 -1.24 2.47 16 30 H 0.07 0.74 5.73 -51.93 -0.30 0.44 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.08 0.66 4.71 -51.93 -0.24 0.41 16 40 H 0.08 0.67 7.51 -51.93 -0.39 0.28 16 41 H 0.17 0.54 7.37 -52.49 -0.39 0.15 16 42 H 0.18 -0.16 8.06 -52.49 -0.42 -0.58 16 43 H 0.18 0.34 8.06 -52.49 -0.42 -0.09 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -35.99 354.43 -6.18 -42.18 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.26 Total: 4.47 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -3.33 Total: 0.59 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 2.01 Total: -60.18 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.99 -6.18 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044611300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.042 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds