Wall clock time and date at job start Tue Mar 31 2020 05:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58869 * 2 1 4 4 C 1.53193 * 109.58930 * 239.71448 * 2 1 3 5 5 C 1.53042 * 109.31358 * 185.43681 * 4 2 1 6 6 H 1.08996 * 109.45946 * 301.35457 * 5 4 2 7 7 N 1.46502 * 109.45861 * 181.38512 * 5 4 2 8 8 C 1.36939 * 119.99608 * 154.97336 * 7 5 4 9 9 H 1.07999 * 120.00159 * 359.72479 * 8 7 5 10 10 C 1.38819 * 119.99457 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99509 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00284 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46961 * 90.00347 * 12 10 8 14 14 H 1.48496 * 109.47531 * 210.00068 * 12 10 8 15 15 H 1.48503 * 109.47425 * 330.00455 * 12 10 8 16 16 C 1.53039 * 109.52801 * 61.37362 * 5 4 2 17 17 C 1.53195 * 109.31244 * 298.61486 * 16 5 4 18 18 N 1.46924 * 108.76617 * 54.65102 * 17 16 5 19 19 C 1.34778 * 120.62716 * 126.36030 * 18 17 16 20 20 O 1.21525 * 119.99980 * 186.99530 * 19 18 17 21 21 C 1.48117 * 120.00220 * 6.99978 * 19 18 17 22 22 C 1.39816 * 119.37609 * 194.62057 * 21 19 18 23 23 C 1.36968 * 119.61085 * 179.71935 * 22 21 19 24 24 C 1.39813 * 118.24977 * 0.53858 * 23 22 21 25 25 N 1.34644 * 135.00679 * 179.70387 * 24 23 22 26 26 N 1.28669 * 109.16406 * 180.02562 * 25 24 23 27 27 N 1.28769 * 111.84409 * 359.97438 * 26 25 24 28 28 H 0.97007 * 125.85838 * 179.97438 * 27 26 25 29 29 C 1.37248 * 108.28241 * 0.02562 * 27 26 25 30 30 N 1.31956 * 134.70909 * 179.97438 * 29 27 26 31 31 H 1.09002 * 109.46674 * 182.54112 * 1 2 3 32 32 H 1.08997 * 109.47123 * 302.54719 * 1 2 3 33 33 H 1.08999 * 109.46818 * 62.54774 * 1 2 3 34 34 H 1.08993 * 109.49599 * 65.48424 * 4 2 1 35 35 H 1.08999 * 109.49805 * 305.38543 * 4 2 1 36 36 H 0.97002 * 120.00022 * 334.97313 * 7 5 4 37 37 H 0.97002 * 119.99631 * 180.02562 * 11 10 8 38 38 H 1.08996 * 109.50038 * 58.57732 * 16 5 4 39 39 H 1.09000 * 109.49904 * 178.67668 * 16 5 4 40 40 H 1.09003 * 109.59610 * 294.86933 * 17 16 5 41 41 H 1.08999 * 109.59042 * 174.43890 * 17 16 5 42 42 H 1.08009 * 120.19372 * 359.97438 * 22 21 19 43 43 H 1.08001 * 120.87723 * 180.28420 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 3.5679 -0.8434 -1.1728 6 1 4.0046 0.1527 -1.1019 7 7 4.0655 -1.5097 -2.3789 8 6 5.3490 -1.2895 -2.8026 9 1 5.9928 -0.6212 -2.2502 10 6 5.8203 -1.9204 -3.9458 11 7 7.0540 -1.7091 -4.3527 12 14 4.7042 -3.0703 -4.9055 13 1 3.9665 -2.2975 -5.9369 14 1 5.5230 -4.1192 -5.5646 15 1 3.7356 -3.7084 -3.9782 16 6 3.9601 -1.6610 0.0600 17 6 3.4685 -0.9436 1.3211 18 7 2.0254 -0.6990 1.1936 19 6 1.1721 -1.1086 2.1532 20 8 -0.0271 -1.0155 1.9799 21 6 1.6960 -1.6720 3.4188 22 6 0.8320 -2.3692 4.2687 23 6 1.3127 -2.8973 5.4375 24 6 2.6633 -2.7060 5.7440 25 7 3.4672 -3.0581 6.7652 26 7 4.6541 -2.6150 6.5406 27 7 4.7239 -1.9765 5.4246 28 1 5.5189 -1.5590 5.0575 29 6 3.4803 -1.9869 4.8440 30 7 2.9734 -1.5016 3.7265 31 1 -0.3633 -1.0267 0.0456 32 1 -0.3633 0.5529 0.8662 33 1 -0.3633 0.4738 -0.9119 34 1 1.7639 -0.1655 -2.1371 35 1 1.6050 -1.7247 -1.2921 36 1 3.4859 -2.1069 -2.8773 37 1 7.3833 -2.1497 -5.1517 38 1 3.5032 -2.6489 0.0018 39 1 5.0446 -1.7630 0.0990 40 1 3.9920 0.0064 1.4288 41 1 3.6576 -1.5683 2.1941 42 1 -0.2074 -2.4943 4.0031 43 1 0.6645 -3.4434 6.1069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044621950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:43 Heat of formation + Delta-G solvation = 143.390979 kcal Electronic energy + Delta-G solvation = -28378.154293 eV Core-core repulsion = 24462.552828 eV Total energy + Delta-G solvation = -3915.601464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.82637 -40.97817 -39.12615 -37.55234 -34.98210 -34.59124 -33.07063 -32.19445 -31.97777 -31.08459 -29.82371 -27.34772 -26.00601 -24.58499 -24.22749 -23.22008 -22.64372 -22.17502 -20.44348 -19.81869 -19.20378 -18.83356 -17.70413 -17.24037 -17.05910 -16.14034 -15.63689 -15.55624 -15.02374 -14.78050 -14.20857 -14.19704 -13.87200 -13.68216 -13.44945 -13.27999 -12.94121 -12.81588 -12.56697 -12.40849 -12.37155 -12.13968 -12.02780 -11.91875 -11.50731 -11.04546 -11.00890 -10.87587 -10.67597 -10.32989 -10.06714 -9.84849 -9.68657 -9.64099 -9.49834 -9.19163 -8.90530 -8.55403 -7.32088 -5.82406 -3.18085 -0.34366 0.50162 1.63431 1.68186 2.43429 2.74501 3.19945 3.32369 3.33835 3.37103 3.42032 3.74499 3.90028 4.19179 4.31288 4.54544 4.81464 4.88450 4.92806 5.02474 5.19493 5.27352 5.30640 5.39944 5.44181 5.52102 5.57324 5.74750 5.75783 5.86577 5.93895 5.99104 6.07705 6.19503 6.25334 6.28096 6.32640 6.40210 6.61410 6.77377 6.89210 6.91433 7.33511 7.66045 7.93177 7.95854 8.36767 9.15044 9.87945 10.07787 11.35847 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.003346 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.137004 B = 8366.552410 C = 9721.246733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.145 3.855 3 H 0.077 0.923 4 C -0.139 4.139 5 C 0.182 3.818 6 H 0.056 0.944 7 N -0.748 5.748 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.934 5.934 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 C -0.153 4.153 17 C 0.083 3.917 18 N -0.576 5.576 19 C 0.568 3.432 20 O -0.523 6.523 21 C 0.151 3.849 22 C -0.121 4.121 23 C -0.002 4.002 24 C -0.024 4.024 25 N -0.240 5.240 26 N 0.011 4.989 27 N -0.400 5.400 28 H 0.461 0.539 29 C 0.209 3.791 30 N -0.430 5.430 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.125 0.875 42 H 0.166 0.834 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.113 0.886 20.123 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 H 0.095 0.905 4 C -0.178 4.178 5 C 0.073 3.927 6 H 0.074 0.926 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.194 4.194 17 C -0.039 4.039 18 N -0.307 5.307 19 C 0.353 3.647 20 O -0.400 6.400 21 C -0.003 4.003 22 C -0.145 4.145 23 C -0.032 4.032 24 C -0.152 4.152 25 N -0.117 5.117 26 N 0.028 4.972 27 N -0.131 5.131 28 H 0.310 0.690 29 C -0.034 4.034 30 N -0.148 5.148 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.142 0.858 42 H 0.184 0.816 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.159 0.980 20.699 23.536 hybrid contribution -0.765 -0.715 -1.480 1.813 sum -11.924 0.265 19.219 22.619 Atomic orbital electron populations 1.22230 0.92624 1.03736 1.00865 1.21412 0.95571 0.95284 0.83526 0.90474 1.22345 0.97588 1.01016 0.96828 1.20172 0.90720 0.95431 0.86419 0.92551 1.42799 1.13287 1.54807 1.28123 1.19060 0.87843 1.23175 1.07321 0.89212 1.24672 0.96124 1.00077 0.98203 1.69700 1.15148 1.47216 1.26056 0.86561 0.80339 0.81285 0.80385 1.21037 1.21767 1.20381 1.22680 1.02028 0.99686 0.94974 1.22836 0.78086 1.01970 1.01049 1.48114 1.08431 1.54844 1.19279 1.17759 0.85935 0.78789 0.82223 1.90873 1.14525 1.55737 1.78864 1.21526 0.87254 0.95575 0.95908 1.21718 1.02405 0.97057 0.93314 1.20529 0.90963 0.95793 0.95941 1.20688 0.96955 1.02972 0.94563 1.75421 0.95599 1.19236 1.21416 1.78132 1.15906 1.04297 0.98871 1.44726 1.10114 1.42493 1.15790 0.69020 1.20070 0.87523 1.01455 0.94382 1.66801 1.13392 1.20747 1.13820 0.90970 0.91225 0.93496 0.90363 0.91780 0.80664 0.93038 0.92620 0.90319 0.91414 0.85829 0.81605 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 7.60 37.16 0.28 -1.41 16 2 C 0.14 1.87 3.49 -67.60 -0.24 1.64 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -2.08 4.84 -26.61 -0.13 -2.20 16 5 C 0.18 3.26 2.73 -67.89 -0.19 3.08 16 6 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 7 N -0.75 -16.98 4.92 -53.38 -0.26 -17.24 16 8 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 9 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 11 N -0.93 -28.78 13.97 55.49 0.78 -28.01 16 12 Si 0.88 21.80 27.73 -169.99 -4.71 17.08 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 16 C -0.15 -2.45 5.66 -26.61 -0.15 -2.60 16 17 C 0.08 1.07 5.84 -3.71 -0.02 1.05 16 18 N -0.58 -7.41 2.97 -166.22 -0.49 -7.91 16 19 C 0.57 7.13 7.55 -12.20 -0.09 7.04 16 20 O -0.52 -7.15 11.81 5.34 0.06 -7.09 16 21 C 0.15 1.63 6.50 -82.94 -0.54 1.09 16 22 C -0.12 -1.02 9.54 -39.45 -0.38 -1.39 16 23 C 0.00 -0.01 10.16 -39.45 -0.40 -0.41 16 24 C -0.02 -0.25 7.38 -84.91 -0.63 -0.87 16 25 N -0.24 -2.65 12.43 32.12 0.40 -2.25 16 26 N 0.01 0.11 13.28 60.35 0.80 0.91 16 27 N -0.40 -3.32 7.06 31.13 0.22 -3.10 16 28 H 0.46 2.29 8.96 -190.25 -1.71 0.58 16 29 C 0.21 2.12 8.56 -156.28 -1.34 0.78 16 30 N -0.43 -4.59 6.29 -8.91 -0.06 -4.65 16 31 H 0.07 0.98 6.78 -51.93 -0.35 0.63 16 32 H 0.07 0.89 6.73 -51.93 -0.35 0.54 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.36 8.18 5.66 -40.82 -0.23 7.94 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.13 1.50 4.17 -75.49 -0.32 1.19 16 42 H 0.17 1.13 7.68 -52.48 -0.40 0.72 16 43 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -32.89 346.44 -8.86 -41.75 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.75 Total: 6.25 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -4.07 Total: -0.98 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 1.38 Total: -62.24 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.06 Total: -7.09 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.89 -8.86 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044621950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.144 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds