Wall clock time and date at job start Tue Mar 31 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.70702 * 2 1 4 4 C 1.53626 * 109.66339 * 120.59174 * 2 1 3 5 5 C 1.53036 * 109.24170 * 174.54725 * 4 2 1 6 6 H 1.08999 * 109.45176 * 58.52804 * 5 4 2 7 7 N 1.46509 * 109.46131 * 178.49032 * 5 4 2 8 8 C 1.36933 * 119.99673 * 205.06747 * 7 5 4 9 9 H 1.07998 * 120.00465 * 0.02562 * 8 7 5 10 10 C 1.38821 * 119.99494 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99800 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99990 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47266 * 89.99537 * 12 10 8 14 14 H 1.48502 * 109.46699 * 209.99764 * 12 10 8 15 15 H 1.48500 * 109.47034 * 329.99245 * 12 10 8 16 16 C 1.53042 * 109.53851 * 298.50835 * 5 4 2 17 17 C 1.53196 * 109.30883 * 61.36769 * 16 5 4 18 18 N 1.46921 * 108.77443 * 305.36174 * 17 16 5 19 19 C 1.34777 * 120.63298 * 233.58587 * 18 17 16 20 20 O 1.21517 * 120.00345 * 169.57157 * 19 18 17 21 21 C 1.48124 * 119.99844 * 349.57901 * 19 18 17 22 22 C 1.39818 * 119.37482 * 172.53023 * 21 19 18 23 23 C 1.36962 * 119.60829 * 179.97438 * 22 21 19 24 24 C 1.39812 * 118.25513 * 0.02562 * 23 22 21 25 25 N 1.34646 * 135.00779 * 180.02562 * 24 23 22 26 26 N 1.28669 * 109.16067 * 180.02562 * 25 24 23 27 27 N 1.28767 * 111.85123 * 359.97438 * 26 25 24 28 28 H 0.96996 * 125.86676 * 179.97438 * 27 26 25 29 29 C 1.37254 * 108.27664 * 359.97438 * 27 26 25 30 30 N 1.31961 * 134.70984 * 180.33219 * 29 27 26 31 31 H 1.08996 * 109.47210 * 175.93692 * 1 2 3 32 32 H 1.09004 * 109.46983 * 295.93623 * 1 2 3 33 33 H 1.08999 * 109.46991 * 55.92917 * 1 2 3 34 34 H 1.09004 * 109.63430 * 54.55415 * 4 2 1 35 35 H 1.09000 * 109.45961 * 294.43386 * 4 2 1 36 36 H 0.96998 * 120.00035 * 25.06830 * 7 5 4 37 37 H 0.97002 * 120.00039 * 179.97438 * 11 10 8 38 38 H 1.08995 * 109.50101 * 301.41328 * 16 5 4 39 39 H 1.09003 * 109.49662 * 181.31315 * 16 5 4 40 40 H 1.09000 * 109.58372 * 185.57946 * 17 16 5 41 41 H 1.08995 * 109.58429 * 65.15152 * 17 16 5 42 42 H 1.08009 * 120.19433 * 0.02915 * 22 21 19 43 43 H 1.08004 * 120.87607 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0470 -0.7362 1.2453 5 6 3.5711 -0.8498 1.1676 6 1 4.0064 0.1471 1.0990 7 7 4.0726 -1.5194 2.3704 8 6 5.3566 -1.2984 2.7920 9 1 5.9994 -0.6302 2.2382 10 6 5.8315 -1.9325 3.9319 11 7 7.0657 -1.7205 4.3369 12 14 4.7194 -3.0877 4.8902 13 1 4.8668 -4.4678 4.3624 14 1 5.0996 -3.0633 6.3255 15 1 3.3079 -2.6500 4.7445 16 6 3.9614 -1.6629 -0.0688 17 6 3.4656 -0.9421 -1.3263 18 7 2.0225 -0.6996 -1.1944 19 6 1.1674 -1.1062 -2.1535 20 8 -0.0307 -1.0735 -1.9531 21 6 1.6880 -1.5931 -3.4520 22 6 0.8044 -2.1575 -4.3770 23 6 1.2805 -2.6088 -5.5793 24 6 2.6491 -2.4861 -5.8373 25 7 3.4560 -2.8032 -6.8675 26 7 4.6634 -2.4660 -6.5775 27 7 4.7445 -1.9332 -5.4081 28 1 5.5552 -1.6068 -4.9872 29 6 3.4867 -1.9062 -4.8592 30 7 2.9812 -1.4805 -3.7170 31 1 -0.3633 -1.0250 -0.0728 32 1 -0.3633 0.4495 0.9242 33 1 -0.3633 0.5757 -0.8513 34 1 1.6095 -1.7337 1.2890 35 1 1.7688 -0.1776 2.1390 36 1 3.4952 -2.1193 2.8680 37 1 7.3976 -2.1633 5.1337 38 1 3.5061 -2.6516 -0.0127 39 1 5.0460 -1.7632 -0.1107 40 1 3.6531 -1.5639 -2.2017 41 1 3.9877 0.0088 -1.4322 42 1 -0.2476 -2.2364 -4.1451 43 1 0.6162 -3.0479 -6.3089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044621951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:46 Heat of formation + Delta-G solvation = 144.772119 kcal Electronic energy + Delta-G solvation = -28371.610553 eV Core-core repulsion = 24456.068979 eV Total energy + Delta-G solvation = -3915.541574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.83025 -40.97476 -39.12086 -37.54237 -34.99063 -34.58806 -33.05125 -32.18676 -31.97468 -31.08123 -29.81668 -27.34089 -26.00524 -24.58741 -24.22054 -23.22851 -22.62687 -22.17496 -20.43491 -19.82157 -19.20852 -18.84217 -17.70007 -17.20515 -17.06078 -16.13234 -15.66069 -15.51592 -15.04219 -14.79450 -14.22133 -14.18076 -13.88208 -13.67653 -13.45908 -13.25703 -12.92681 -12.82158 -12.55411 -12.41855 -12.38853 -12.13857 -12.01911 -11.90604 -11.51516 -11.05760 -10.99684 -10.88224 -10.67124 -10.31699 -10.00327 -9.83902 -9.69446 -9.64073 -9.50465 -9.19111 -8.88171 -8.53949 -7.31534 -5.82037 -3.17640 -0.35453 0.49653 1.63226 1.67497 2.42814 2.75500 3.22755 3.30287 3.34088 3.37503 3.42316 3.73686 3.89502 4.19445 4.30701 4.54883 4.80667 4.88444 4.92726 5.03066 5.20381 5.27384 5.32564 5.39642 5.45254 5.52537 5.57663 5.74692 5.76923 5.87219 5.94958 5.99521 6.07604 6.21632 6.26535 6.28828 6.33744 6.41981 6.63018 6.78783 6.88766 6.92613 7.34796 7.65681 7.93578 7.95849 8.37123 9.15486 9.88413 10.08343 11.36218 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.003327 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.373523 B = 8414.094865 C = 9794.092586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.144 3.856 3 H 0.077 0.923 4 C -0.138 4.138 5 C 0.182 3.818 6 H 0.056 0.944 7 N -0.749 5.749 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.934 5.934 12 Si 0.884 3.116 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.152 4.152 17 C 0.079 3.921 18 N -0.577 5.577 19 C 0.568 3.432 20 O -0.523 6.523 21 C 0.151 3.849 22 C -0.121 4.121 23 C -0.001 4.001 24 C -0.025 4.025 25 N -0.240 5.240 26 N 0.011 4.989 27 N -0.400 5.400 28 H 0.461 0.539 29 C 0.209 3.791 30 N -0.430 5.430 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.131 0.869 41 H 0.066 0.934 42 H 0.167 0.833 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.185 1.214 -20.311 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.042 3.958 3 H 0.095 0.905 4 C -0.177 4.177 5 C 0.072 3.928 6 H 0.074 0.926 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.193 4.193 17 C -0.043 4.043 18 N -0.308 5.308 19 C 0.353 3.647 20 O -0.399 6.399 21 C -0.003 4.003 22 C -0.145 4.145 23 C -0.032 4.032 24 C -0.152 4.152 25 N -0.117 5.117 26 N 0.028 4.972 27 N -0.131 5.131 28 H 0.310 0.690 29 C -0.034 4.034 30 N -0.147 5.147 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.147 0.853 41 H 0.084 0.916 42 H 0.185 0.815 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.219 1.256 -20.848 23.709 hybrid contribution -0.767 -0.709 1.501 1.829 sum -11.987 0.547 -19.347 22.766 Atomic orbital electron populations 1.22244 0.92676 1.04089 1.00619 1.21511 0.95543 0.95204 0.83562 0.90485 1.22408 0.97552 1.00947 0.96768 1.20177 0.90695 0.95411 0.86485 0.92619 1.42796 1.13179 1.54703 1.28356 1.19060 0.87567 1.23182 1.07563 0.89218 1.24671 0.96103 1.00105 0.98204 1.69697 1.15057 1.47083 1.26299 0.86560 0.80529 0.81589 0.79910 1.21160 1.21737 1.20286 1.22669 1.01973 0.99659 0.94976 1.22946 0.77986 1.02026 1.01370 1.48107 1.08463 1.55030 1.19176 1.17756 0.85910 0.78617 0.82406 1.90863 1.14795 1.54978 1.79286 1.21570 0.87139 0.95658 0.95897 1.21723 1.02556 0.97724 0.92498 1.20533 0.90979 0.95010 0.96663 1.20692 0.96650 1.04404 0.93454 1.75424 0.95042 1.18867 1.22347 1.78131 1.15846 1.06622 0.96599 1.44730 1.08869 1.46536 1.12983 0.68997 1.20113 0.87022 1.02487 0.93808 1.66834 1.13792 1.18497 1.15577 0.90408 0.93462 0.91704 0.91758 0.90470 0.80669 0.93041 0.92612 0.90325 0.85264 0.91610 0.81547 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 7.61 37.16 0.28 -1.44 16 2 C 0.14 1.88 3.51 -67.37 -0.24 1.64 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -2.08 4.86 -26.39 -0.13 -2.21 16 5 C 0.18 3.27 2.73 -67.89 -0.19 3.08 16 6 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 7 N -0.75 -17.02 4.92 -53.38 -0.26 -17.28 16 8 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 9 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 10 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 11 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 12 Si 0.88 21.82 27.74 -169.99 -4.71 17.11 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 16 C -0.15 -2.43 5.66 -26.61 -0.15 -2.58 16 17 C 0.08 1.02 5.81 -3.71 -0.02 1.00 16 18 N -0.58 -7.43 2.97 -165.97 -0.49 -7.92 16 19 C 0.57 7.10 7.55 -12.20 -0.09 7.01 16 20 O -0.52 -7.12 11.77 5.35 0.06 -7.06 16 21 C 0.15 1.61 6.58 -82.93 -0.55 1.07 16 22 C -0.12 -1.00 9.55 -39.45 -0.38 -1.38 16 23 C 0.00 -0.01 10.16 -39.46 -0.40 -0.41 16 24 C -0.02 -0.25 7.38 -84.91 -0.63 -0.87 16 25 N -0.24 -2.63 12.43 32.12 0.40 -2.24 16 26 N 0.01 0.11 13.28 60.35 0.80 0.91 16 27 N -0.40 -3.30 7.06 31.14 0.22 -3.08 16 28 H 0.46 2.29 8.96 -190.26 -1.71 0.58 16 29 C 0.21 2.10 8.56 -156.27 -1.34 0.76 16 30 N -0.43 -4.55 6.15 -8.90 -0.05 -4.61 16 31 H 0.08 1.07 6.55 -51.93 -0.34 0.73 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.82 6.96 -51.93 -0.36 0.45 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.36 8.20 5.66 -40.82 -0.23 7.96 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.13 1.56 4.15 -80.23 -0.33 1.23 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.17 1.12 7.63 -52.48 -0.40 0.71 16 43 H 0.16 0.72 8.06 -52.48 -0.42 0.29 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -32.89 346.28 -8.88 -41.77 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.76 Total: 6.28 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -4.07 Total: -1.08 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 1.39 Total: -62.25 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: 0.06 Total: -7.06 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.89 -8.88 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044621951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.543 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds