Wall clock time and date at job start Tue Mar 31 2020 05:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.58632 * 2 1 4 4 C 1.53188 * 109.71557 * 120.36772 * 2 1 3 5 5 C 1.53037 * 109.31480 * 65.20012 * 4 2 1 6 6 H 1.08997 * 109.46281 * 301.37053 * 5 4 2 7 7 N 1.46505 * 109.46111 * 181.39691 * 5 4 2 8 8 C 1.36928 * 119.99804 * 154.97475 * 7 5 4 9 9 H 1.07997 * 120.00777 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99651 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99867 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00256 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47243 * 89.99922 * 12 10 8 14 14 H 1.48504 * 109.47202 * 330.00257 * 12 10 8 15 15 H 1.48501 * 109.47571 * 210.00308 * 12 10 8 16 16 C 1.53046 * 109.52535 * 61.38485 * 5 4 2 17 17 C 1.53193 * 109.31191 * 298.62600 * 16 5 4 18 18 N 1.46928 * 108.77455 * 54.63951 * 17 16 5 19 19 C 1.34772 * 120.63152 * 126.36812 * 18 17 16 20 20 O 1.21523 * 119.99952 * 179.88119 * 19 18 17 21 21 C 1.48117 * 120.00043 * 359.88399 * 19 18 17 22 22 C 1.39819 * 119.37687 * 202.26789 * 21 19 18 23 23 C 1.36970 * 119.61037 * 179.76407 * 22 21 19 24 24 C 1.39815 * 118.24851 * 0.49883 * 23 22 21 25 25 N 1.34648 * 135.00238 * 179.74698 * 24 23 22 26 26 N 1.28673 * 109.16250 * 180.02562 * 25 24 23 27 27 N 1.28768 * 111.84115 * 359.97438 * 26 25 24 28 28 H 0.96998 * 125.85378 * 180.02562 * 27 26 25 29 29 C 1.37251 * 108.28737 * 0.02562 * 27 26 25 30 30 N 1.31946 * 134.70932 * 180.02562 * 29 27 26 31 31 H 1.09005 * 109.46968 * 180.28206 * 1 2 3 32 32 H 1.09001 * 109.47004 * 300.28023 * 1 2 3 33 33 H 1.08995 * 109.47177 * 60.27755 * 1 2 3 34 34 H 1.09003 * 109.48732 * 305.25261 * 4 2 1 35 35 H 1.09004 * 109.50738 * 185.15985 * 4 2 1 36 36 H 0.97005 * 119.99459 * 334.97379 * 7 5 4 37 37 H 0.97004 * 120.00453 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.49802 * 58.57981 * 16 5 4 39 39 H 1.09001 * 109.49141 * 178.67723 * 16 5 4 40 40 H 1.09004 * 109.58554 * 174.42443 * 17 16 5 41 41 H 1.08993 * 109.58671 * 294.85050 * 17 16 5 42 42 H 1.07998 * 120.19143 * 0.02562 * 22 21 19 43 43 H 1.07998 * 120.87307 * 180.23106 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0468 -0.7290 1.2442 5 6 1.6473 -2.2044 1.1689 6 1 0.5624 -2.2838 1.0992 7 7 2.1111 -2.8978 2.3732 8 6 1.4761 -4.0349 2.7959 9 1 0.6331 -4.4205 2.2418 10 6 1.9152 -4.6916 3.9374 11 7 1.3045 -5.7843 4.3440 12 14 3.3728 -4.0245 4.8963 13 1 2.8917 -3.0729 5.9299 14 1 4.2961 -3.3226 3.9689 15 1 4.0895 -5.1474 5.5526 16 6 2.2857 -2.8448 -0.0659 17 6 1.7718 -2.1399 -1.3251 18 7 2.0225 -0.6980 -1.1955 19 6 2.6918 -0.0284 -2.1547 20 8 2.8909 1.1646 -2.0367 21 6 3.1847 -0.7465 -3.3527 22 6 4.2411 -0.2045 -4.0910 23 6 4.7039 -0.8670 -5.1968 24 6 4.0867 -2.0695 -5.5543 25 7 4.2547 -2.9692 -6.5419 26 7 3.3966 -3.9174 -6.3999 27 7 2.6426 -3.7314 -5.3728 28 1 1.9298 -4.3191 -5.0773 29 6 3.0205 -2.5587 -4.7679 30 7 2.6128 -1.8880 -3.7073 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5182 0.8875 33 1 -0.3633 0.5095 -0.8924 34 1 1.6111 -0.2792 2.1364 35 1 3.1329 -0.6480 1.2887 36 1 2.8680 -2.5513 2.8712 37 1 1.6116 -6.2435 5.1414 38 1 3.3695 -2.7437 -0.0089 39 1 2.0200 -3.9012 -0.1062 40 1 2.2968 -2.5249 -2.1994 41 1 0.7016 -2.3166 -1.4318 42 1 4.6923 0.7290 -3.7886 43 1 5.5212 -0.4688 -5.7798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044621952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:49 Heat of formation + Delta-G solvation = 128.967465 kcal Electronic energy + Delta-G solvation = -28394.417726 eV Core-core repulsion = 24478.190811 eV Total energy + Delta-G solvation = -3916.226915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.82964 -40.88221 -39.10440 -37.70546 -34.98653 -34.62138 -32.92569 -32.08545 -31.90871 -31.11428 -29.86110 -27.53307 -26.22591 -24.53228 -24.16314 -23.23019 -22.83258 -22.05166 -20.89976 -19.33411 -19.07184 -18.74113 -17.89738 -17.25696 -17.06090 -16.15477 -15.82426 -15.36526 -15.07936 -14.57977 -14.25341 -14.09887 -13.82057 -13.76164 -13.58667 -13.24924 -12.95442 -12.81433 -12.79999 -12.55240 -12.31540 -12.14558 -11.99661 -11.75156 -11.44223 -11.05854 -10.99410 -10.93686 -10.66698 -10.49957 -10.28531 -9.80902 -9.74062 -9.66185 -9.61716 -9.34694 -8.90556 -8.64912 -7.32249 -5.82691 -3.18355 -0.34065 0.49818 1.62361 1.68400 2.42645 2.72692 3.16168 3.32156 3.33453 3.36651 3.41735 3.74194 3.89702 4.18592 4.30916 4.54201 4.79593 4.86760 4.92989 5.03341 5.19673 5.26203 5.27276 5.37481 5.40143 5.50801 5.59869 5.67585 5.71636 5.77449 5.85107 5.96392 6.08814 6.13530 6.20045 6.23421 6.32697 6.34361 6.50829 6.76288 6.87726 6.90893 7.31383 7.65881 7.91481 7.92810 8.36418 9.14737 9.87672 10.07491 11.35554 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.003354 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.266392 B = 8345.940473 C = 9405.842472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.099 0.901 4 C -0.137 4.137 5 C 0.182 3.818 6 H 0.060 0.940 7 N -0.749 5.749 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.934 5.934 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.291 1.291 16 C -0.153 4.153 17 C 0.078 3.922 18 N -0.573 5.573 19 C 0.569 3.431 20 O -0.533 6.533 21 C 0.155 3.845 22 C -0.122 4.122 23 C 0.000 4.000 24 C -0.024 4.024 25 N -0.239 5.239 26 N 0.012 4.988 27 N -0.400 5.400 28 H 0.461 0.539 29 C 0.210 3.790 30 N -0.430 5.430 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.360 0.640 37 H 0.260 0.740 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.126 0.874 41 H 0.069 0.931 42 H 0.166 0.834 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.095 10.975 -19.644 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.117 0.883 4 C -0.176 4.176 5 C 0.072 3.928 6 H 0.078 0.922 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.204 1.204 15 H -0.218 1.218 16 C -0.194 4.194 17 C -0.045 4.045 18 N -0.304 5.304 19 C 0.354 3.646 20 O -0.410 6.410 21 C 0.001 3.999 22 C -0.145 4.145 23 C -0.031 4.031 24 C -0.151 4.151 25 N -0.116 5.116 26 N 0.028 4.972 27 N -0.131 5.131 28 H 0.310 0.690 29 C -0.034 4.034 30 N -0.147 5.147 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.143 0.857 41 H 0.087 0.913 42 H 0.183 0.817 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.696 10.115 -20.273 22.816 hybrid contribution 0.910 0.554 1.458 1.806 sum 3.606 10.670 -18.815 21.929 Atomic orbital electron populations 1.22143 0.94479 1.03106 1.02132 1.21295 0.94446 0.97111 0.83457 0.88318 1.22261 1.01296 0.97350 0.96715 1.20208 0.97445 0.88739 0.86362 0.92189 1.42805 1.37516 1.30406 1.28308 1.19051 1.11158 0.99826 1.07339 0.89221 1.24667 0.98932 0.97236 0.98214 1.69697 1.42773 1.19475 1.26177 0.86566 0.83488 0.78158 0.80382 1.21039 1.20394 1.21778 1.22674 1.00728 1.00924 0.95034 1.22881 1.02119 0.78213 1.01275 1.48164 1.52449 1.10405 1.19387 1.17691 0.78755 0.86186 0.81941 1.90802 1.58273 1.13727 1.78167 1.21327 0.93656 0.89198 0.95683 1.21706 0.96477 1.01851 0.94498 1.20526 0.97803 0.89802 0.94968 1.20680 0.99141 0.98998 0.96322 1.75426 1.16368 0.99725 1.20097 1.78134 0.98985 1.18171 1.01876 1.44720 1.29942 1.17993 1.20452 0.69028 1.20037 0.96745 0.91148 0.95445 1.66691 1.29626 1.06565 1.11832 0.91418 0.91085 0.92672 0.90251 0.91859 0.80696 0.93036 0.92666 0.90372 0.85709 0.91283 0.81664 0.82189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.04 37.16 0.34 -1.54 16 2 C 0.14 1.81 3.20 -67.60 -0.22 1.60 16 3 H 0.10 1.30 7.00 -51.93 -0.36 0.93 16 4 C -0.14 -2.03 5.02 -26.61 -0.13 -2.17 16 5 C 0.18 3.22 2.53 -67.88 -0.17 3.05 16 6 H 0.06 1.10 6.44 -51.93 -0.33 0.76 16 7 N -0.75 -16.85 4.92 -53.38 -0.26 -17.12 16 8 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 11 N -0.93 -28.70 13.97 55.49 0.78 -27.92 16 12 Si 0.88 21.72 27.73 -169.99 -4.71 17.00 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 17 C 0.08 1.00 5.57 -3.71 -0.02 0.98 16 18 N -0.57 -7.47 2.68 -166.22 -0.45 -7.91 16 19 C 0.57 7.44 7.61 -12.21 -0.09 7.35 16 20 O -0.53 -7.94 15.92 5.35 0.09 -7.86 16 21 C 0.15 1.72 6.44 -82.93 -0.53 1.18 16 22 C -0.12 -1.05 9.54 -39.45 -0.38 -1.43 16 23 C 0.00 0.00 10.17 -39.45 -0.40 -0.40 16 24 C -0.02 -0.24 7.38 -84.91 -0.63 -0.87 16 25 N -0.24 -2.66 12.43 32.12 0.40 -2.26 16 26 N 0.01 0.12 13.28 60.35 0.80 0.92 16 27 N -0.40 -3.33 7.06 31.13 0.22 -3.11 16 28 H 0.46 2.28 8.96 -190.26 -1.71 0.58 16 29 C 0.21 2.14 8.56 -156.29 -1.34 0.80 16 30 N -0.43 -4.65 6.39 -8.91 -0.06 -4.71 16 31 H 0.07 0.83 5.74 -51.93 -0.30 0.54 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.36 8.11 5.66 -40.82 -0.23 7.88 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.13 1.52 4.01 -78.47 -0.31 1.21 16 41 H 0.07 0.85 7.50 -51.93 -0.39 0.46 16 42 H 0.17 1.17 7.77 -52.49 -0.41 0.76 16 43 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -33.30 348.10 -8.53 -41.83 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.60 Total: 6.63 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -3.98 Total: -0.74 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 1.43 Total: -62.11 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.09 Total: -7.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.30 -8.53 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044621952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.799 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds