Wall clock time and date at job start Tue Mar 31 2020 05:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.69909 * 2 1 4 4 C 1.53192 * 109.59003 * 239.63908 * 2 1 3 5 5 C 1.53039 * 109.31278 * 294.84701 * 4 2 1 6 6 H 1.09009 * 109.45849 * 58.64090 * 5 4 2 7 7 N 1.46495 * 109.46181 * 178.61007 * 5 4 2 8 8 C 1.36938 * 120.00507 * 204.99943 * 7 5 4 9 9 H 1.07998 * 119.99633 * 359.73191 * 8 7 5 10 10 C 1.38812 * 120.00119 * 179.72598 * 8 7 5 11 11 N 1.31613 * 119.99607 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99876 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47338 * 90.00159 * 12 10 8 14 14 H 1.48509 * 109.46765 * 209.99830 * 12 10 8 15 15 H 1.48496 * 109.47429 * 329.99434 * 12 10 8 16 16 C 1.53036 * 109.53970 * 298.63568 * 5 4 2 17 17 C 1.53199 * 109.31283 * 61.36341 * 16 5 4 18 18 N 1.46922 * 108.77628 * 305.36808 * 17 16 5 19 19 C 1.34773 * 120.62981 * 233.58990 * 18 17 16 20 20 O 1.21525 * 120.00357 * 172.80247 * 19 18 17 21 21 C 1.48118 * 119.99947 * 352.80394 * 19 18 17 22 22 C 1.39822 * 119.37753 * 164.60528 * 21 19 18 23 23 C 1.36971 * 119.61078 * 179.73120 * 22 21 19 24 24 C 1.39810 * 118.25178 * 0.55900 * 23 22 21 25 25 N 1.34644 * 135.00525 * 179.72796 * 24 23 22 26 26 N 1.28673 * 109.15845 * 179.97438 * 25 24 23 27 27 N 1.28760 * 111.84850 * 359.97438 * 26 25 24 28 28 H 0.96998 * 125.85962 * 180.02562 * 27 26 25 29 29 C 1.37250 * 108.28308 * 359.97438 * 27 26 25 30 30 N 1.31957 * 134.71153 * 180.02562 * 29 27 26 31 31 H 1.09004 * 109.46766 * 180.35977 * 1 2 3 32 32 H 1.08993 * 109.46983 * 300.35936 * 1 2 3 33 33 H 1.09000 * 109.46907 * 60.36256 * 1 2 3 34 34 H 1.09000 * 109.49871 * 174.89567 * 4 2 1 35 35 H 1.08998 * 109.52291 * 54.81674 * 4 2 1 36 36 H 0.97007 * 119.99739 * 24.72720 * 7 5 4 37 37 H 0.97008 * 119.99853 * 179.97438 * 11 10 8 38 38 H 1.09005 * 109.49967 * 181.31659 * 16 5 4 39 39 H 1.08999 * 109.50007 * 301.41236 * 16 5 4 40 40 H 1.09000 * 109.58383 * 185.57871 * 17 16 5 41 41 H 1.08997 * 109.70095 * 65.22379 * 17 16 5 42 42 H 1.08004 * 120.18957 * 359.97438 * 22 21 19 43 43 H 1.08002 * 120.87486 * 180.22677 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0437 -0.7295 -1.2453 5 6 1.6416 -2.2042 -1.1699 6 1 0.5566 -2.2816 -1.0989 7 7 2.1025 -2.8980 -2.3751 8 6 1.4652 -4.0342 -2.7971 9 1 0.6255 -4.4213 -2.2389 10 6 1.8984 -4.6883 -3.9422 11 7 1.2861 -5.7807 -4.3474 12 14 3.3511 -4.0190 -4.9071 13 1 4.6074 -4.6182 -4.3897 14 1 3.1928 -4.3641 -6.3429 15 1 3.4078 -2.5429 -4.7562 16 6 2.2801 -2.8463 0.0638 17 6 1.7692 -2.1408 1.3240 18 7 2.0225 -0.6994 1.1946 19 6 2.6936 -0.0314 2.1536 20 8 3.0112 1.1284 1.9775 21 6 3.0440 -0.7107 3.4223 22 6 4.0017 -0.1383 4.2651 23 6 4.3254 -0.7595 5.4421 24 6 3.6856 -1.9632 5.7528 25 7 3.7427 -2.8350 6.7773 26 7 2.9221 -3.8010 6.5560 27 7 2.2976 -3.6530 5.4397 28 1 1.6345 -4.2596 5.0748 29 6 2.7305 -2.4891 4.8552 30 7 2.4463 -1.8508 3.7358 31 1 -0.3633 -1.0277 0.0065 32 1 -0.3633 0.5194 0.8867 33 1 -0.3633 0.5082 -0.8932 34 1 3.1298 -0.6504 -1.2912 35 1 1.6081 -0.2788 -2.1371 36 1 2.8566 -2.5502 -2.8764 37 1 1.5886 -6.2376 -5.1479 38 1 2.0124 -3.9022 0.1041 39 1 3.3640 -2.7474 0.0056 40 1 2.2944 -2.5272 2.1974 41 1 0.6989 -2.3153 1.4344 42 1 4.4805 0.7904 3.9913 43 1 5.0595 -0.3336 6.1100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044621953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:52 Heat of formation + Delta-G solvation = 129.174227 kcal Electronic energy + Delta-G solvation = -28373.945876 eV Core-core repulsion = 24457.727927 eV Total energy + Delta-G solvation = -3916.217949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.83242 -40.87598 -39.10336 -37.70331 -34.99094 -34.61752 -32.92426 -32.07308 -31.90783 -31.11804 -29.85909 -27.52294 -26.22969 -24.53112 -24.15438 -23.23041 -22.82986 -22.04907 -20.89051 -19.32964 -19.07327 -18.74027 -17.88952 -17.24116 -17.06024 -16.12893 -15.80148 -15.43974 -15.07724 -14.56177 -14.22881 -14.09331 -13.82090 -13.76664 -13.55141 -13.24330 -12.96644 -12.81866 -12.80222 -12.56891 -12.31057 -12.14630 -11.99587 -11.75090 -11.44472 -11.05532 -10.99198 -10.92650 -10.65830 -10.49178 -10.27610 -9.79011 -9.74586 -9.65421 -9.61986 -9.37804 -8.90414 -8.63282 -7.31927 -5.82452 -3.18078 -0.35177 0.49580 1.62602 1.67666 2.42483 2.73651 3.19380 3.30924 3.33762 3.37147 3.42088 3.73760 3.89426 4.18817 4.30660 4.54518 4.80337 4.87393 4.93504 5.03881 5.19158 5.26607 5.27348 5.37841 5.40836 5.49573 5.60587 5.67706 5.72108 5.78181 5.84883 5.96092 6.08628 6.14208 6.19651 6.23351 6.33044 6.35138 6.51420 6.76858 6.88068 6.91365 7.32145 7.65563 7.91615 7.93171 8.36711 9.15087 9.88053 10.07850 11.35795 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.003283 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.032734 B = 8526.285897 C = 9546.964777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.099 0.901 4 C -0.137 4.137 5 C 0.182 3.818 6 H 0.059 0.941 7 N -0.749 5.749 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.934 5.934 12 Si 0.884 3.116 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.153 4.153 17 C 0.084 3.916 18 N -0.575 5.575 19 C 0.569 3.431 20 O -0.532 6.532 21 C 0.153 3.847 22 C -0.121 4.121 23 C -0.001 4.001 24 C -0.024 4.024 25 N -0.240 5.240 26 N 0.012 4.988 27 N -0.399 5.399 28 H 0.461 0.539 29 C 0.209 3.791 30 N -0.429 5.429 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.360 0.640 37 H 0.260 0.740 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.123 0.877 41 H 0.068 0.932 42 H 0.166 0.834 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 11.146 19.977 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.117 0.883 4 C -0.176 4.176 5 C 0.073 3.927 6 H 0.077 0.923 7 N -0.391 5.391 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.194 4.194 17 C -0.038 4.038 18 N -0.305 5.305 19 C 0.354 3.646 20 O -0.409 6.409 21 C 0.000 4.000 22 C -0.145 4.145 23 C -0.032 4.032 24 C -0.151 4.151 25 N -0.117 5.117 26 N 0.028 4.972 27 N -0.131 5.131 28 H 0.310 0.690 29 C -0.034 4.034 30 N -0.146 5.146 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.139 0.861 41 H 0.086 0.914 42 H 0.184 0.816 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.060 10.285 20.562 23.083 hybrid contribution 0.954 0.556 -1.480 1.846 sum 3.014 10.841 19.083 22.153 Atomic orbital electron populations 1.22150 0.94506 1.03119 1.02107 1.21295 0.94323 0.97114 0.83570 0.88312 1.22256 1.01341 0.97324 0.96673 1.20202 0.97417 0.88722 0.86397 0.92261 1.42804 1.37991 1.30272 1.27984 1.19051 1.11557 0.99554 1.07199 0.89227 1.24666 0.98978 0.97251 0.98161 1.69698 1.42835 1.19557 1.26036 0.86563 0.83547 0.78539 0.79948 1.21166 1.21744 1.20291 1.22678 1.00784 1.00909 0.94998 1.22777 1.02040 0.78133 1.00894 1.48139 1.52668 1.10347 1.19367 1.17694 0.78790 0.85735 0.82346 1.90798 1.54286 1.16336 1.79474 1.21340 0.93694 0.89292 0.95718 1.21727 0.97478 1.01983 0.93283 1.20527 0.96763 0.90080 0.95825 1.20689 1.00818 0.99057 0.94551 1.75428 1.15141 0.99745 1.21345 1.78130 1.02317 1.17805 0.98909 1.44720 1.34303 1.18374 1.15693 0.69014 1.20047 0.97830 0.91198 0.94339 1.66783 1.26729 1.07461 1.13670 0.91392 0.92739 0.91063 0.91840 0.90326 0.80690 0.93041 0.90326 0.92606 0.86078 0.91375 0.81604 0.82212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.02 37.16 0.34 -1.53 16 2 C 0.14 1.82 3.22 -67.60 -0.22 1.60 16 3 H 0.10 1.30 7.00 -51.93 -0.36 0.94 16 4 C -0.14 -2.05 5.02 -26.61 -0.13 -2.18 16 5 C 0.18 3.23 2.52 -67.89 -0.17 3.05 16 6 H 0.06 1.08 6.44 -51.92 -0.33 0.75 16 7 N -0.75 -16.88 4.93 -53.39 -0.26 -17.14 16 8 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 11 N -0.93 -28.71 13.97 55.49 0.78 -27.93 16 12 Si 0.88 21.74 27.74 -169.99 -4.71 17.03 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 16 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 17 C 0.08 1.08 5.41 -3.71 -0.02 1.06 16 18 N -0.57 -7.46 2.68 -166.22 -0.45 -7.91 16 19 C 0.57 7.41 7.62 -12.21 -0.09 7.32 16 20 O -0.53 -7.91 15.82 5.34 0.08 -7.83 16 21 C 0.15 1.68 6.48 -82.93 -0.54 1.14 16 22 C -0.12 -1.04 9.54 -39.45 -0.38 -1.41 16 23 C 0.00 -0.01 10.16 -39.45 -0.40 -0.41 16 24 C -0.02 -0.24 7.38 -84.91 -0.63 -0.87 16 25 N -0.24 -2.64 12.43 32.12 0.40 -2.25 16 26 N 0.01 0.12 13.28 60.35 0.80 0.92 16 27 N -0.40 -3.30 7.06 31.13 0.22 -3.08 16 28 H 0.46 2.26 8.96 -190.27 -1.71 0.56 16 29 C 0.21 2.12 8.56 -156.28 -1.34 0.78 16 30 N -0.43 -4.60 6.31 -8.90 -0.06 -4.65 16 31 H 0.07 0.83 5.72 -51.93 -0.30 0.54 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.12 1.47 4.21 -73.57 -0.31 1.16 16 41 H 0.07 0.84 7.49 -51.93 -0.39 0.45 16 42 H 0.17 1.17 7.69 -52.48 -0.40 0.77 16 43 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -33.25 347.91 -8.52 -41.78 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.58 Total: 6.55 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -3.98 Total: -0.73 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 1.43 Total: -62.04 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.08 Total: -7.83 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.25 -8.52 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044621953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.951 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds