Wall clock time and date at job start Tue Mar 31 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.58582 * 2 1 4 4 C 1.53194 * 109.58554 * 120.28454 * 2 1 3 5 5 C 1.53036 * 109.34020 * 65.13267 * 4 2 1 6 6 H 1.08994 * 109.46426 * 301.36068 * 5 4 2 7 7 N 1.46499 * 109.45694 * 181.40272 * 5 4 2 8 8 C 1.36941 * 120.00291 * 155.00115 * 7 5 4 9 9 H 1.08008 * 119.99442 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00662 * 179.97438 * 8 7 5 11 11 N 1.31627 * 119.99408 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00409 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46962 * 89.99893 * 12 10 8 14 14 H 1.48493 * 109.47515 * 209.99950 * 12 10 8 15 15 H 1.48498 * 109.47363 * 330.00422 * 12 10 8 16 16 C 1.53097 * 109.50230 * 61.35095 * 5 4 2 17 17 C 1.53191 * 109.33462 * 298.65224 * 16 5 4 18 18 N 1.46927 * 109.58322 * 239.56860 * 2 1 3 19 19 C 1.34777 * 120.62770 * 113.84824 * 18 2 1 20 20 O 1.21568 * 120.00020 * 356.20190 * 19 18 2 21 21 C 1.47726 * 119.99864 * 176.20903 * 19 18 2 22 22 C 1.40116 * 120.34475 * 230.30911 * 21 19 18 23 23 N 1.31266 * 121.14751 * 179.72497 * 22 21 19 24 24 C 1.32717 * 121.79747 * 0.58203 * 23 22 21 25 25 N 1.37117 * 133.40773 * 179.68644 * 24 23 22 26 26 H 0.97002 * 126.59163 * 359.97411 * 25 24 23 27 27 N 1.40194 * 106.82255 * 180.02562 * 25 24 23 28 28 N 1.28665 * 109.50481 * 359.97438 * 27 25 24 29 29 C 1.35331 * 110.00443 * 0.02562 * 28 27 25 30 30 C 1.39424 * 120.35356 * 50.58785 * 21 19 18 31 31 H 1.09001 * 109.47698 * 299.71649 * 1 2 3 32 32 H 1.09003 * 109.47113 * 59.72058 * 1 2 3 33 33 H 1.09008 * 109.47397 * 179.72049 * 1 2 3 34 34 H 1.08996 * 109.49837 * 185.10833 * 4 2 1 35 35 H 1.09003 * 109.49088 * 305.16780 * 4 2 1 36 36 H 0.97004 * 120.00634 * 335.00424 * 7 5 4 37 37 H 0.96998 * 119.99524 * 179.97438 * 11 10 8 38 38 H 1.09007 * 109.48902 * 178.69280 * 16 5 4 39 39 H 1.09003 * 109.51918 * 58.63081 * 16 5 4 40 40 H 1.09000 * 109.58533 * 294.85504 * 17 16 5 41 41 H 1.08997 * 109.70829 * 174.49175 * 17 16 5 42 42 H 1.07997 * 119.43229 * 0.02562 * 22 21 19 43 43 H 1.07997 * 120.95414 * 359.95231 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 1.2463 5 6 1.6413 -2.2026 1.1738 6 1 0.5564 -2.2802 1.1031 7 7 2.1021 -2.8941 2.3803 8 6 1.4648 -4.0294 2.8046 9 1 0.6225 -4.4153 2.2493 10 6 1.9016 -4.6849 3.9475 11 7 2.9290 -4.2154 4.6232 12 14 1.0326 -6.2340 4.5257 13 1 1.6700 -7.4213 3.9017 14 1 1.1349 -6.3367 6.0035 15 1 -0.3978 -6.1757 4.1313 16 6 2.2799 -2.8465 -0.0597 17 6 1.7691 -2.1428 -1.3210 18 7 2.0225 -0.7011 -1.1936 19 6 2.6944 -0.0346 -2.1531 20 8 2.8382 1.1696 -2.0697 21 6 3.2559 -0.7674 -3.3064 22 6 4.5944 -0.5838 -3.6781 23 7 5.1110 -1.2308 -4.6967 24 6 4.3926 -2.0756 -5.4257 25 7 4.6767 -2.8559 -6.5168 26 1 5.5294 -2.9214 -6.9745 27 7 3.4976 -3.5399 -6.8445 28 7 2.5655 -3.2078 -6.0221 29 6 3.0383 -2.3134 -5.1232 30 6 2.4582 -1.6446 -4.0399 31 1 -0.3634 0.5094 0.8925 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3634 -1.0277 -0.0050 34 1 3.1296 -0.6487 1.2922 35 1 1.6078 -0.2753 2.1372 36 1 2.8588 -2.5477 2.8789 37 1 3.2341 -4.6732 5.4221 38 1 2.0122 -3.9024 -0.0986 39 1 3.3640 -2.7480 -0.0020 40 1 0.6986 -2.3175 -1.4286 41 1 2.2923 -2.5299 -2.1953 42 1 5.2131 0.0983 -3.1138 43 1 1.4223 -1.8035 -3.7792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044630600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:32 Heat of formation + Delta-G solvation = 110.291531 kcal Electronic energy + Delta-G solvation = -28166.832713 eV Core-core repulsion = 24249.795948 eV Total energy + Delta-G solvation = -3917.036764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.78597 -40.65876 -38.85557 -37.58385 -34.82398 -34.43968 -32.96870 -31.90456 -31.71700 -30.87247 -29.38261 -27.38891 -25.48453 -24.96806 -24.05264 -23.35034 -22.92717 -21.93793 -20.82184 -19.26571 -18.90716 -18.09754 -17.44622 -17.06002 -16.73718 -16.41440 -16.04398 -15.14233 -14.90530 -14.59846 -14.09166 -14.02910 -13.71031 -13.62019 -13.51264 -13.38045 -13.06253 -12.89227 -12.81694 -12.58734 -12.38989 -12.02128 -11.86813 -11.63318 -11.35563 -10.99420 -10.92656 -10.82904 -10.53677 -10.42195 -10.24573 -9.88620 -9.80250 -9.72135 -9.66992 -9.38506 -8.94838 -8.65731 -7.03100 -5.82405 -3.11851 -0.23454 0.32848 1.59276 1.65408 2.39865 2.75573 3.11024 3.39356 3.42924 3.44937 3.46523 3.77682 3.85545 4.19864 4.23319 4.46751 4.53163 4.90632 4.95898 5.06306 5.15359 5.16832 5.23914 5.29967 5.38748 5.49371 5.54706 5.64544 5.71217 5.74484 5.83130 5.97950 6.11430 6.21080 6.24422 6.30732 6.37756 6.44905 6.52738 6.81213 6.97070 7.05736 7.30371 7.35057 7.63762 7.95709 8.35830 9.47219 10.04183 10.38420 11.40016 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.003155 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.962041 B = 8873.027188 C =10053.756875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.099 0.901 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 C -0.151 4.151 17 C 0.095 3.905 18 N -0.589 5.589 19 C 0.569 3.431 20 O -0.534 6.534 21 C -0.191 4.191 22 C 0.231 3.769 23 N -0.487 5.487 24 C 0.292 3.708 25 N -0.484 5.484 26 H 0.454 0.546 27 N 0.019 4.981 28 N -0.192 5.192 29 C -0.072 4.072 30 C 0.053 3.947 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.185 0.815 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.901 7.558 -19.536 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.117 0.883 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.207 1.207 16 C -0.192 4.192 17 C -0.028 4.028 18 N -0.321 5.321 19 C 0.356 3.644 20 O -0.411 6.411 21 C -0.200 4.200 22 C 0.058 3.942 23 N -0.201 5.201 24 C 0.047 3.953 25 N -0.209 5.209 26 H 0.302 0.698 27 N 0.036 4.964 28 N -0.073 5.073 29 C -0.197 4.197 30 C 0.022 3.978 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.202 0.798 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.006 7.083 -20.650 21.854 hybrid contribution 0.143 -0.566 1.006 1.163 sum 1.149 6.517 -19.644 20.728 Atomic orbital electron populations 1.22156 0.94730 1.02920 1.02162 1.21270 0.94265 0.97064 0.83405 0.88326 1.22232 1.01471 0.97252 0.96351 1.20205 0.96852 0.89109 0.86978 0.92986 1.42430 1.37995 1.29430 1.26505 1.19218 1.10317 1.01199 1.06486 0.91169 1.24745 0.98456 0.99435 0.98173 1.69663 1.27523 1.41306 1.19462 0.86218 0.78950 0.83343 0.77840 1.21743 1.21781 1.20717 1.22702 1.01304 1.00624 0.94608 1.22174 1.01225 0.79178 1.00183 1.48201 1.53978 1.09722 1.20150 1.17747 0.78345 0.86616 0.81728 1.90812 1.59432 1.13361 1.77505 1.20800 0.96787 1.02025 1.00344 1.22992 0.91219 0.91359 0.88597 1.66781 1.37247 1.08721 1.07374 1.19601 0.91465 0.93637 0.90618 1.47528 1.14377 1.34806 1.24238 0.69788 1.81739 0.86189 1.12136 1.16379 1.74905 1.21884 1.09218 1.01321 1.20333 0.93592 1.04176 1.01640 1.21166 1.00696 0.87864 0.88082 0.91103 0.92717 0.91554 0.91715 0.90307 0.78260 0.93470 0.90548 0.92126 0.90775 0.90423 0.79798 0.82149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.02 37.16 0.34 -1.47 16 2 C 0.14 1.80 3.19 -67.60 -0.22 1.59 16 3 H 0.10 1.30 7.03 -51.93 -0.37 0.93 16 4 C -0.13 -2.01 5.02 -26.61 -0.13 -2.14 16 5 C 0.18 3.14 2.53 -67.86 -0.17 2.97 16 6 H 0.05 0.93 6.44 -51.93 -0.33 0.59 16 7 N -0.72 -16.91 5.12 -53.36 -0.27 -17.18 16 8 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 9 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 12 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 C -0.15 -2.34 5.66 -26.58 -0.15 -2.49 16 17 C 0.10 1.10 4.99 -3.71 -0.02 1.08 16 18 N -0.59 -7.11 2.68 -166.37 -0.45 -7.56 16 19 C 0.57 7.03 7.25 -12.38 -0.09 6.94 16 20 O -0.53 -8.02 16.48 5.31 0.09 -7.93 16 21 C -0.19 -1.98 5.01 -104.87 -0.53 -2.51 16 22 C 0.23 2.27 10.88 -17.09 -0.19 2.08 16 23 N -0.49 -5.07 10.37 -12.03 -0.12 -5.19 16 24 C 0.29 3.05 8.49 -155.93 -1.32 1.73 16 25 N -0.48 -4.14 7.52 31.15 0.23 -3.91 16 26 H 0.45 2.28 8.96 -182.52 -1.64 0.64 16 27 N 0.02 0.20 13.82 60.35 0.83 1.03 16 28 N -0.19 -2.22 12.40 32.17 0.40 -1.82 16 29 C -0.07 -0.78 7.27 -84.74 -0.62 -1.40 16 30 C 0.05 0.51 7.53 -38.52 -0.29 0.22 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.76 5.72 -51.92 -0.30 0.47 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.38 9.71 7.80 -40.82 -0.32 9.40 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16 41 H 0.08 0.80 4.54 -51.93 -0.24 0.56 16 42 H 0.19 1.46 8.06 -52.49 -0.42 1.03 16 43 H 0.16 1.26 7.11 -52.49 -0.37 0.89 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -32.00 352.74 -8.36 -40.36 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.45 Total: 7.12 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -3.63 Total: -0.31 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 1.35 Total: -61.23 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.09 Total: -7.93 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.00 -8.36 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044630600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.652 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds