Wall clock time and date at job start Tue Mar 31 2020 05:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58446 * 2 1 4 4 C 1.53169 * 109.58716 * 239.56858 * 2 1 3 5 5 C 1.53045 * 109.32694 * 185.57247 * 4 2 1 6 6 H 1.08995 * 109.45822 * 181.38455 * 5 4 2 7 7 N 1.46497 * 109.45683 * 301.36151 * 5 4 2 8 8 C 1.36940 * 119.99796 * 205.02739 * 7 5 4 9 9 H 1.07999 * 119.99630 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00446 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99852 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00342 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47224 * 60.00284 * 12 10 8 14 14 H 1.48503 * 109.47267 * 299.99981 * 12 10 8 15 15 H 1.48507 * 109.47346 * 179.97438 * 12 10 8 16 16 C 1.53040 * 109.52634 * 61.36976 * 5 4 2 17 17 C 1.53195 * 109.31433 * 298.64470 * 16 5 4 18 18 N 1.46917 * 109.58630 * 120.28844 * 2 1 3 19 19 C 1.34784 * 120.63063 * 353.41471 * 18 2 1 20 20 O 1.21563 * 119.99637 * 357.62659 * 19 18 2 21 21 C 1.47715 * 119.99895 * 177.62742 * 19 18 2 22 22 C 1.40115 * 120.35559 * 33.13713 * 21 19 18 23 23 N 1.31261 * 121.15133 * 179.97438 * 22 21 19 24 24 C 1.32711 * 121.80064 * 359.97438 * 23 22 21 25 25 N 1.37116 * 133.40388 * 180.02562 * 24 23 22 26 26 H 0.96998 * 126.59203 * 359.96994 * 25 24 23 27 27 N 1.40191 * 106.82159 * 180.02562 * 25 24 23 28 28 N 1.28664 * 109.50861 * 0.02562 * 27 25 24 29 29 C 1.35327 * 110.00259 * 359.97438 * 28 27 25 30 30 C 1.39438 * 120.35084 * 212.85983 * 21 19 18 31 31 H 1.08996 * 109.47071 * 306.42897 * 1 2 3 32 32 H 1.09003 * 109.47017 * 66.42367 * 1 2 3 33 33 H 1.08997 * 109.47262 * 186.42147 * 1 2 3 34 34 H 1.08996 * 109.48095 * 65.62350 * 4 2 1 35 35 H 1.08997 * 109.50124 * 305.53378 * 4 2 1 36 36 H 0.96994 * 120.00548 * 25.02036 * 7 5 4 37 37 H 0.97003 * 119.99897 * 359.97438 * 11 10 8 38 38 H 1.09006 * 109.49416 * 58.59273 * 16 5 4 39 39 H 1.09001 * 109.49848 * 178.69287 * 16 5 4 40 40 H 1.08998 * 109.58996 * 174.42003 * 17 16 5 41 41 H 1.09003 * 109.58564 * 294.70295 * 17 16 5 42 42 H 1.07998 * 119.42280 * 359.97438 * 22 21 19 43 43 H 1.08002 * 120.94897 * 0.02566 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7309 -1.2443 5 6 3.5675 -0.8495 -1.1692 6 1 3.9375 -1.3475 -2.0653 7 7 4.1570 0.4884 -1.0756 8 6 5.4411 0.7020 -1.5006 9 1 6.0193 -0.1159 -1.9045 10 6 5.9996 1.9697 -1.4125 11 7 5.2951 2.9664 -0.9198 12 14 7.7515 2.2610 -1.9916 13 1 7.8592 1.9211 -3.4332 14 1 8.6799 1.4048 -1.2104 15 1 8.1079 3.6888 -1.7923 16 6 3.9569 -1.6657 0.0654 17 6 3.4650 -0.9454 1.3248 18 7 2.0225 -0.6981 1.1952 19 6 1.1673 -1.1044 2.1545 20 8 -0.0187 -0.8562 2.0562 21 6 1.6711 -1.8511 3.3251 22 6 2.9461 -1.5832 3.8408 23 7 3.4091 -2.2370 4.8806 24 6 2.6969 -3.1765 5.4899 25 7 2.9361 -3.9897 6.5677 26 1 3.7408 -4.0109 7.1087 27 7 1.7944 -4.7856 6.7366 28 7 0.9251 -4.4867 5.8364 29 6 1.4064 -3.5081 5.0350 30 6 0.8806 -2.8262 3.9324 31 1 -0.3633 0.6102 0.8268 32 1 -0.3633 0.4110 -0.9419 33 1 -0.3633 -1.0212 0.1149 34 1 1.7658 -0.1694 -2.1362 35 1 1.6029 -1.7269 -1.2889 36 1 3.6378 1.2229 -0.7126 37 1 4.3855 2.8151 -0.6186 38 1 3.4982 -2.6529 0.0083 39 1 5.0412 -1.7696 0.1058 40 1 3.6517 -1.5691 2.1990 41 1 3.9922 0.0025 1.4330 42 1 3.5585 -0.8256 3.3746 43 1 -0.1076 -3.0515 3.5595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044630601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:35 Heat of formation + Delta-G solvation = 144.172376 kcal Electronic energy + Delta-G solvation = -28655.088878 eV Core-core repulsion = 24739.521298 eV Total energy + Delta-G solvation = -3915.567580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.75620 -40.84990 -38.80736 -37.63944 -34.60862 -34.43352 -33.17917 -32.17997 -32.02392 -30.56113 -28.94946 -27.21277 -25.56859 -25.01087 -23.85174 -23.48420 -22.99150 -22.02761 -20.63387 -19.14337 -19.07659 -18.42028 -17.41436 -16.98311 -16.51491 -16.27954 -15.81402 -15.53286 -14.94628 -14.70447 -14.26904 -13.93505 -13.72931 -13.49008 -13.40066 -13.35469 -13.25719 -12.92243 -12.79429 -12.35143 -12.19742 -12.01341 -11.92759 -11.60341 -11.35805 -10.90418 -10.82540 -10.63244 -10.45718 -10.31331 -10.10221 -10.01710 -9.64681 -9.42436 -9.24058 -9.07803 -8.99326 -8.40276 -7.13681 -6.17302 -3.18920 -0.18475 0.33062 1.62420 1.68016 2.53873 2.81993 3.26173 3.47105 3.49406 3.49960 3.67360 3.83213 3.90759 4.22488 4.26417 4.53122 4.60332 4.91135 4.99310 5.11906 5.18820 5.28390 5.29241 5.41303 5.45115 5.55955 5.57911 5.68486 5.72498 5.81109 5.88754 5.99775 6.12775 6.22473 6.27235 6.31933 6.40042 6.56605 6.58006 6.65517 6.84932 7.09331 7.37576 7.43774 7.73598 8.10160 8.67318 9.12908 9.99342 10.14033 11.30203 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015536 B = 0.003351 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.838337 B = 8352.864729 C = 9557.695916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.148 3.852 3 H 0.079 0.921 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.053 0.947 7 N -0.733 5.733 8 C -0.332 4.332 9 H 0.064 0.936 10 C -0.042 4.042 11 N -0.942 5.942 12 Si 1.077 2.923 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.285 1.285 16 C -0.148 4.148 17 C 0.086 3.914 18 N -0.588 5.588 19 C 0.566 3.434 20 O -0.529 6.529 21 C -0.199 4.199 22 C 0.200 3.800 23 N -0.488 5.488 24 C 0.292 3.708 25 N -0.483 5.483 26 H 0.454 0.546 27 N 0.015 4.985 28 N -0.193 5.193 29 C -0.075 4.075 30 C 0.076 3.924 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.367 0.633 37 H 0.254 0.746 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.200 0.800 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 -12.280 10.033 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 H 0.097 0.903 4 C -0.174 4.174 5 C 0.068 3.932 6 H 0.071 0.929 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.082 0.918 10 C -0.240 4.240 11 N -0.587 5.587 12 Si 0.908 3.092 13 H -0.223 1.223 14 H -0.223 1.223 15 H -0.211 1.211 16 C -0.190 4.190 17 C -0.036 4.036 18 N -0.320 5.320 19 C 0.353 3.647 20 O -0.408 6.408 21 C -0.208 4.208 22 C 0.028 3.972 23 N -0.202 5.202 24 C 0.047 3.953 25 N -0.209 5.209 26 H 0.302 0.698 27 N 0.032 4.968 28 N -0.074 5.074 29 C -0.201 4.201 30 C 0.045 3.955 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.201 0.799 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.216 0.784 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.466 -12.141 10.892 17.203 hybrid contribution -0.803 -0.546 -0.192 0.990 sum -6.269 -12.688 10.700 17.742 Atomic orbital electron populations 1.22217 0.92829 1.03440 1.00844 1.21301 0.95150 0.95750 0.83256 0.90292 1.22275 0.97413 1.00492 0.97241 1.20128 0.90227 0.87711 0.95089 0.92896 1.42514 1.14085 1.04702 1.76378 1.20018 0.90437 0.96988 1.38858 0.91769 1.25716 1.06027 0.91541 1.00737 1.70913 1.10932 1.32333 1.44506 0.83271 0.74417 0.75955 0.75528 1.22339 1.22278 1.21094 1.22507 1.01706 0.98000 0.96748 1.22579 0.79350 1.02183 0.99514 1.48071 1.07651 1.56337 1.19897 1.17728 0.85913 0.79302 0.81782 1.90858 1.15797 1.56785 1.77330 1.20901 0.96883 1.01980 1.01022 1.23900 0.91529 0.94645 0.87135 1.66833 1.35562 1.07636 1.10160 1.19653 0.92133 0.92901 0.90570 1.47521 1.18297 1.29933 1.25145 0.69775 1.81718 0.88547 1.10645 1.15870 1.74877 1.21348 1.10106 1.01060 1.20364 0.95244 1.02185 1.02287 1.20964 0.98959 0.87861 0.87686 0.90834 0.93707 0.91593 0.90577 0.91778 0.79896 0.93475 0.93034 0.90484 0.89432 0.89059 0.78392 0.81981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.60 37.16 0.28 -1.63 16 2 C 0.15 2.19 3.19 -67.62 -0.22 1.97 16 3 H 0.08 1.31 6.65 -51.93 -0.35 0.97 16 4 C -0.14 -2.02 5.07 -26.62 -0.13 -2.16 16 5 C 0.18 3.12 3.10 -67.89 -0.21 2.91 16 6 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 7 N -0.73 -16.07 4.31 -53.39 -0.23 -16.30 16 8 C -0.33 -8.48 9.93 -15.06 -0.15 -8.63 16 9 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 10 C -0.04 -1.15 5.50 -17.43 -0.10 -1.24 16 11 N -0.94 -27.32 13.70 55.49 0.76 -26.56 16 12 Si 1.08 24.53 29.92 -169.99 -5.09 19.44 16 13 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.30 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 C -0.15 -2.23 5.78 -26.61 -0.15 -2.38 16 17 C 0.09 1.17 4.67 -3.71 -0.02 1.15 16 18 N -0.59 -8.12 2.97 -166.39 -0.49 -8.61 16 19 C 0.57 7.69 7.31 -12.39 -0.09 7.60 16 20 O -0.53 -8.21 12.29 5.31 0.07 -8.14 16 21 C -0.20 -2.32 5.53 -104.87 -0.58 -2.90 16 22 C 0.20 2.20 8.61 -17.09 -0.15 2.05 16 23 N -0.49 -5.59 10.37 -12.63 -0.13 -5.72 16 24 C 0.29 3.30 8.49 -155.93 -1.32 1.97 16 25 N -0.48 -4.43 7.52 31.15 0.23 -4.19 16 26 H 0.45 2.56 8.96 -182.53 -1.64 0.92 16 27 N 0.02 0.17 13.82 60.35 0.83 1.00 16 28 N -0.19 -2.34 12.40 32.17 0.40 -1.94 16 29 C -0.08 -0.89 7.27 -84.74 -0.62 -1.51 16 30 C 0.08 0.85 9.78 -38.51 -0.38 0.47 16 31 H 0.07 1.11 6.70 -51.93 -0.35 0.76 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.95 6.78 -51.93 -0.35 0.60 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.37 8.35 4.90 -40.82 -0.20 8.15 16 37 H 0.25 7.21 6.78 -40.82 -0.28 6.94 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.09 1.00 3.52 -53.30 -0.19 0.81 16 41 H 0.09 1.44 7.74 -51.93 -0.40 1.04 16 42 H 0.20 1.99 5.32 -52.49 -0.28 1.71 16 43 H 0.16 1.61 8.01 -52.49 -0.42 1.19 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -30.79 342.41 -8.50 -39.30 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.19 Total: 8.89 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.83 Total: -2.31 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: 1.37 Total: -62.34 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.07 Total: -8.14 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.09 Total: 19.44 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.79 -8.50 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044630601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.470 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds