Wall clock time and date at job start Tue Mar 31 2020 05:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58446 * 2 1 4 4 C 1.53169 * 109.58716 * 239.56858 * 2 1 3 5 5 C 1.53045 * 109.32694 * 185.57247 * 4 2 1 6 6 H 1.08995 * 109.45822 * 181.38455 * 5 4 2 7 7 N 1.46497 * 109.45683 * 301.36151 * 5 4 2 8 8 C 1.36940 * 119.99796 * 205.02739 * 7 5 4 9 9 H 1.07999 * 119.99630 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00446 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99852 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00342 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47224 * 60.00284 * 12 10 8 14 14 H 1.48503 * 109.47267 * 299.99981 * 12 10 8 15 15 H 1.48507 * 109.47346 * 179.97438 * 12 10 8 16 16 C 1.53040 * 109.52634 * 61.36976 * 5 4 2 17 17 C 1.53195 * 109.31433 * 298.64470 * 16 5 4 18 18 N 1.46917 * 109.58630 * 120.28844 * 2 1 3 19 19 C 1.34784 * 120.63063 * 353.41471 * 18 2 1 20 20 O 1.21563 * 119.99637 * 357.62659 * 19 18 2 21 21 C 1.47715 * 119.99895 * 177.62742 * 19 18 2 22 22 C 1.40115 * 120.35559 * 33.13713 * 21 19 18 23 23 N 1.31261 * 121.15133 * 179.97438 * 22 21 19 24 24 C 1.32711 * 121.80064 * 359.97438 * 23 22 21 25 25 N 1.37116 * 133.40388 * 180.02562 * 24 23 22 26 26 H 0.96998 * 126.59203 * 359.96994 * 25 24 23 27 27 N 1.40191 * 106.82159 * 180.02562 * 25 24 23 28 28 N 1.28664 * 109.50861 * 0.02562 * 27 25 24 29 29 C 1.35327 * 110.00259 * 359.97438 * 28 27 25 30 30 C 1.39438 * 120.35084 * 212.85983 * 21 19 18 31 31 H 1.08996 * 109.47071 * 306.42897 * 1 2 3 32 32 H 1.09003 * 109.47017 * 66.42367 * 1 2 3 33 33 H 1.08997 * 109.47262 * 186.42147 * 1 2 3 34 34 H 1.08996 * 109.48095 * 65.62350 * 4 2 1 35 35 H 1.08997 * 109.50124 * 305.53378 * 4 2 1 36 36 H 0.96994 * 120.00548 * 25.02036 * 7 5 4 37 37 H 0.97003 * 119.99897 * 359.97438 * 11 10 8 38 38 H 1.09006 * 109.49416 * 58.59273 * 16 5 4 39 39 H 1.09001 * 109.49848 * 178.69287 * 16 5 4 40 40 H 1.08998 * 109.58996 * 174.42003 * 17 16 5 41 41 H 1.09003 * 109.58564 * 294.70295 * 17 16 5 42 42 H 1.07998 * 119.42280 * 359.97438 * 22 21 19 43 43 H 1.08002 * 120.94897 * 0.02566 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7309 -1.2443 5 6 3.5675 -0.8495 -1.1692 6 1 3.9375 -1.3475 -2.0653 7 7 4.1570 0.4884 -1.0756 8 6 5.4411 0.7020 -1.5006 9 1 6.0193 -0.1159 -1.9045 10 6 5.9996 1.9697 -1.4125 11 7 5.2951 2.9664 -0.9198 12 14 7.7515 2.2610 -1.9916 13 1 7.8592 1.9211 -3.4332 14 1 8.6799 1.4048 -1.2104 15 1 8.1079 3.6888 -1.7923 16 6 3.9569 -1.6657 0.0654 17 6 3.4650 -0.9454 1.3248 18 7 2.0225 -0.6981 1.1952 19 6 1.1673 -1.1044 2.1545 20 8 -0.0187 -0.8562 2.0562 21 6 1.6711 -1.8511 3.3251 22 6 2.9461 -1.5832 3.8408 23 7 3.4091 -2.2370 4.8806 24 6 2.6969 -3.1765 5.4899 25 7 2.9361 -3.9897 6.5677 26 1 3.7408 -4.0109 7.1087 27 7 1.7944 -4.7856 6.7366 28 7 0.9251 -4.4867 5.8364 29 6 1.4064 -3.5081 5.0350 30 6 0.8806 -2.8262 3.9324 31 1 -0.3633 0.6102 0.8268 32 1 -0.3633 0.4110 -0.9419 33 1 -0.3633 -1.0212 0.1149 34 1 1.7658 -0.1694 -2.1362 35 1 1.6029 -1.7269 -1.2889 36 1 3.6378 1.2229 -0.7126 37 1 4.3855 2.8151 -0.6186 38 1 3.4982 -2.6529 0.0083 39 1 5.0412 -1.7696 0.1058 40 1 3.6517 -1.5691 2.1990 41 1 3.9922 0.0025 1.4330 42 1 3.5585 -0.8256 3.3746 43 1 -0.1076 -3.0515 3.5595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044630601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:34 Heat of formation + Delta-G solvation = 123.619542 kcal Electronic energy + Delta-G solvation = -28655.980116 eV Core-core repulsion = 24739.521298 eV Total energy + Delta-G solvation = -3916.458818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.62875 -41.95420 -39.79202 -38.89335 -36.18726 -35.32468 -34.35638 -33.73901 -32.92251 -31.54500 -30.57352 -28.48299 -26.48073 -26.09587 -25.48343 -24.86167 -23.88692 -23.16213 -21.79578 -20.38307 -19.93075 -19.49153 -19.22215 -17.94354 -17.45789 -17.30897 -17.00414 -16.85894 -16.27302 -16.01191 -15.54409 -15.43542 -14.97660 -14.72360 -14.61381 -14.40700 -14.27815 -14.16350 -13.76910 -13.39913 -13.30877 -13.27458 -13.06228 -12.78685 -12.62773 -12.54082 -12.21146 -12.04340 -11.90012 -11.77863 -11.64061 -11.13903 -11.03229 -10.85759 -10.50978 -10.38631 -10.12036 -9.61777 -9.01773 -8.27616 -5.22131 -1.05104 -0.58319 0.80261 0.83726 1.50628 1.63868 1.71897 1.74466 1.87899 2.31065 2.61069 2.77085 2.95668 3.04269 3.26391 3.39059 3.48874 3.59345 3.75975 3.82867 3.94587 4.00003 4.10586 4.20476 4.27675 4.41495 4.44416 4.53503 4.59383 4.62767 4.79170 4.88300 4.90543 4.99374 5.05747 5.20711 5.21678 5.28578 5.39276 5.60052 5.64449 5.72043 6.22504 6.32663 6.51905 6.60138 6.99602 7.19016 8.10067 8.21189 9.23771 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015536 B = 0.003351 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.838337 B = 8352.864729 C = 9557.695916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.149 3.851 3 H 0.056 0.944 4 C -0.124 4.124 5 C 0.171 3.829 6 H 0.044 0.956 7 N -0.741 5.741 8 C -0.319 4.319 9 H 0.066 0.934 10 C -0.102 4.102 11 N -0.978 5.978 12 Si 1.120 2.880 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.299 1.299 16 C -0.141 4.141 17 C 0.093 3.907 18 N -0.587 5.587 19 C 0.571 3.429 20 O -0.548 6.548 21 C -0.201 4.201 22 C 0.202 3.798 23 N -0.491 5.491 24 C 0.286 3.714 25 N -0.465 5.465 26 H 0.469 0.531 27 N 0.016 4.984 28 N -0.209 5.209 29 C -0.084 4.084 30 C 0.085 3.915 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.361 0.639 37 H 0.244 0.756 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.116 0.884 41 H 0.067 0.933 42 H 0.207 0.793 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.106 -14.122 10.610 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.046 3.954 3 H 0.074 0.926 4 C -0.163 4.163 5 C 0.063 3.937 6 H 0.062 0.938 7 N -0.384 5.384 8 C -0.451 4.451 9 H 0.084 0.916 10 C -0.294 4.294 11 N -0.626 5.626 12 Si 0.947 3.053 13 H -0.210 1.210 14 H -0.204 1.204 15 H -0.226 1.226 16 C -0.182 4.182 17 C -0.029 4.029 18 N -0.319 5.319 19 C 0.359 3.641 20 O -0.427 6.427 21 C -0.210 4.210 22 C 0.030 3.970 23 N -0.205 5.205 24 C 0.041 3.959 25 N -0.192 5.192 26 H 0.321 0.679 27 N 0.032 4.968 28 N -0.090 5.090 29 C -0.210 4.210 30 C 0.054 3.946 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.194 0.806 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.133 0.867 41 H 0.085 0.915 42 H 0.223 0.777 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.272 -14.059 11.491 18.907 hybrid contribution -0.914 -0.073 -0.322 0.972 sum -6.187 -14.131 11.169 19.045 Atomic orbital electron populations 1.22077 0.91916 1.03181 1.00912 1.21187 0.95695 0.94720 0.83769 0.92610 1.22156 0.95488 1.01586 0.97063 1.20358 0.91694 0.85789 0.95884 0.93825 1.42644 1.13155 1.06409 1.76224 1.20308 0.91616 0.96606 1.36531 0.91633 1.26883 1.08920 0.91908 1.01638 1.71006 1.10944 1.33372 1.47324 0.82689 0.71386 0.75211 0.75997 1.21019 1.20380 1.22600 1.22369 1.01242 0.98768 0.95790 1.22503 0.78948 1.01358 1.00054 1.48023 1.07725 1.56317 1.19797 1.17888 0.85515 0.78874 0.81861 1.90856 1.16615 1.57480 1.77797 1.20657 0.97304 1.02377 1.00641 1.23953 0.91373 0.94560 0.87125 1.66875 1.35572 1.07766 1.10263 1.19779 0.92106 0.93052 0.91001 1.47529 1.18419 1.28781 1.24517 0.67928 1.81679 0.88833 1.10681 1.15557 1.74886 1.21915 1.10635 1.01557 1.20490 0.95554 1.02358 1.02555 1.21061 0.99196 0.87177 0.87166 0.92054 0.92667 0.91585 0.91086 0.89623 0.80580 0.94544 0.90557 0.91567 0.86691 0.91464 0.77688 0.80921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.36 7.60 71.98 0.55 -2.81 16 2 C 0.15 4.34 3.19 44.97 0.14 4.49 16 3 H 0.06 1.90 6.65 -2.39 -0.02 1.89 16 4 C -0.12 -3.56 5.07 30.67 0.16 -3.41 16 5 C 0.17 5.84 3.10 45.02 0.14 5.98 16 6 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 7 N -0.74 -32.70 4.31 -322.82 -1.39 -34.09 16 8 C -0.32 -16.28 9.93 84.03 0.83 -15.45 16 9 H 0.07 3.28 7.83 -2.91 -0.02 3.26 16 10 C -0.10 -5.54 5.50 84.86 0.47 -5.07 16 11 N -0.98 -57.95 13.70 21.65 0.30 -57.66 16 12 Si 1.12 49.50 29.92 68.60 2.05 51.56 16 13 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 16 C -0.14 -4.00 5.78 30.67 0.18 -3.82 16 17 C 0.09 2.43 4.67 86.36 0.40 2.83 16 18 N -0.59 -15.58 2.97 -798.59 -2.37 -17.95 16 19 C 0.57 14.68 7.31 86.75 0.63 15.31 16 20 O -0.55 -16.32 12.29 -3.91 -0.05 -16.37 16 21 C -0.20 -4.31 5.53 -20.03 -0.11 -4.42 16 22 C 0.20 4.07 8.61 85.23 0.73 4.80 16 23 N -0.49 -10.22 10.37 -193.88 -2.01 -12.23 16 24 C 0.29 5.84 8.49 134.01 1.14 6.98 16 25 N -0.46 -7.49 7.52 -55.37 -0.42 -7.91 16 26 H 0.47 4.18 8.96 -213.26 -1.91 2.27 16 27 N 0.02 0.31 13.82 37.02 0.51 0.82 16 28 N -0.21 -4.73 12.40 -52.14 -0.65 -5.37 16 29 C -0.08 -1.82 7.27 39.63 0.29 -1.53 16 30 C 0.08 1.72 9.78 22.96 0.22 1.95 16 31 H 0.06 1.82 6.70 -2.39 -0.02 1.81 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.80 6.78 -2.39 -0.02 1.78 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.36 16.86 4.90 -92.71 -0.45 16.40 16 37 H 0.24 14.34 6.78 -92.71 -0.63 13.71 16 38 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.12 2.38 3.52 -3.67 -0.01 2.37 16 41 H 0.07 2.12 7.74 -2.39 -0.02 2.10 16 42 H 0.21 3.80 5.32 -2.91 -0.02 3.78 16 43 H 0.17 3.09 8.01 -2.91 -0.02 3.07 16 Total: -1.00 -65.48 342.41 0.62 -64.86 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -1.13 Total: 28.51 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 5.77 Total: 5.82 kcal Atomic # 7 Polarization: -128.35 SS G_CDS: -6.03 Total: -134.38 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.05 Total: -16.37 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.05 Total: 51.56 kcal Total: -65.48 0.62 -64.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044630601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.483 kcal (2) G-P(sol) polarization free energy of solvation -65.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds