Wall clock time and date at job start Tue Mar 31 2020 05:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.58318 * 2 1 4 4 C 1.53191 * 109.58476 * 239.71822 * 2 1 3 5 5 C 1.53039 * 109.30798 * 185.57554 * 4 2 1 6 6 H 1.08996 * 109.46691 * 301.34744 * 5 4 2 7 7 N 1.46500 * 109.46045 * 181.38252 * 5 4 2 8 8 C 1.36939 * 120.00230 * 154.99995 * 7 5 4 9 9 H 1.08003 * 119.99795 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00088 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00126 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99907 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47052 * 90.00056 * 12 10 8 14 14 H 1.48497 * 109.47151 * 209.99967 * 12 10 8 15 15 H 1.48502 * 109.47220 * 329.99908 * 12 10 8 16 16 C 1.53048 * 109.54038 * 61.36918 * 5 4 2 17 17 C 1.53197 * 109.30761 * 298.63399 * 16 5 4 18 18 N 1.46917 * 109.58558 * 120.42667 * 2 1 3 19 19 C 1.34778 * 120.63303 * 353.39763 * 18 2 1 20 20 O 1.21572 * 119.99850 * 6.20585 * 19 18 2 21 21 C 1.47722 * 120.00391 * 186.20964 * 19 18 2 22 22 C 1.40124 * 120.35017 * 28.69299 * 21 19 18 23 23 N 1.31250 * 121.14639 * 180.02562 * 22 21 19 24 24 C 1.32715 * 121.80713 * 359.97438 * 23 22 21 25 25 N 1.37122 * 133.40873 * 180.02562 * 24 23 22 26 26 H 0.96994 * 126.58965 * 359.97438 * 25 24 23 27 27 N 1.40189 * 106.81945 * 179.97438 * 25 24 23 28 28 N 1.28664 * 109.51233 * 359.97438 * 27 25 24 29 29 C 1.35337 * 109.99990 * 0.02562 * 28 27 25 30 30 C 1.39429 * 120.35423 * 208.41742 * 21 19 18 31 31 H 1.08996 * 109.47091 * 183.17451 * 1 2 3 32 32 H 1.08999 * 109.46996 * 303.17941 * 1 2 3 33 33 H 1.09005 * 109.47125 * 63.17562 * 1 2 3 34 34 H 1.08999 * 109.49736 * 305.52589 * 4 2 1 35 35 H 1.08997 * 109.50104 * 65.59831 * 4 2 1 36 36 H 0.97000 * 119.99910 * 335.01020 * 7 5 4 37 37 H 0.96996 * 120.00289 * 179.97438 * 11 10 8 38 38 H 1.08995 * 109.49456 * 58.57895 * 16 5 4 39 39 H 1.08993 * 109.49840 * 178.68411 * 16 5 4 40 40 H 1.08999 * 109.58421 * 174.42343 * 17 16 5 41 41 H 1.08997 * 109.58257 * 294.70069 * 17 16 5 42 42 H 1.08001 * 119.42069 * 359.97438 * 22 21 19 43 43 H 1.08004 * 120.94888 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2464 5 6 3.5675 -0.8464 -1.1712 6 1 4.0062 0.1488 -1.0990 7 7 4.0653 -1.5127 -2.3772 8 6 5.3498 -1.2951 -2.7990 9 1 5.9960 -0.6326 -2.2423 10 6 5.8212 -1.9260 -3.9421 11 7 5.0335 -2.7330 -4.6208 12 14 7.5737 -1.6298 -4.5170 13 1 8.4753 -2.6312 -3.8930 14 1 7.6382 -1.7587 -5.9950 15 1 8.0006 -0.2639 -4.1202 16 6 3.9570 -1.6658 0.0614 17 6 3.4650 -0.9486 1.3226 18 7 2.0225 -0.7010 1.1935 19 6 1.1674 -1.1093 2.1520 20 8 -0.0316 -1.0004 1.9832 21 6 1.6870 -1.6889 3.4074 22 6 2.9431 -1.3068 3.8971 23 7 3.4201 -1.8122 5.0105 24 6 2.7405 -2.7029 5.7219 25 7 3.0002 -3.3717 6.8905 26 1 3.7982 -3.2937 7.4362 27 7 1.8905 -4.1897 7.1449 28 7 1.0200 -4.0361 6.2100 29 6 1.4701 -3.1401 5.3010 30 6 0.9303 -2.6176 4.1208 31 1 -0.3633 -1.0260 0.0569 32 1 -0.3633 0.5624 0.8601 33 1 -0.3634 0.4638 -0.9171 34 1 1.6030 -1.7237 -1.2935 35 1 1.7656 -0.1644 -2.1371 36 1 3.4849 -2.1078 -2.8771 37 1 5.3628 -3.1736 -5.4197 38 1 3.4984 -2.6527 0.0019 39 1 5.0412 -1.7696 0.1015 40 1 3.6518 -1.5745 2.1952 41 1 3.9921 -0.0010 1.4331 42 1 3.5291 -0.5845 3.3482 43 1 -0.0428 -2.9281 3.7701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044630603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:38 Heat of formation + Delta-G solvation = 137.001361 kcal Electronic energy + Delta-G solvation = -28085.227030 eV Core-core repulsion = 24169.348491 eV Total energy + Delta-G solvation = -3915.878539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.80209 -40.87889 -38.82148 -37.52028 -34.68109 -34.48393 -33.20381 -32.10273 -32.00159 -30.64278 -29.34050 -27.19777 -25.58655 -24.98445 -24.11963 -23.25830 -22.82256 -21.94587 -20.46851 -19.63892 -19.11950 -18.55887 -17.19804 -17.06244 -16.56026 -16.38564 -15.78265 -15.44109 -15.00765 -14.69886 -14.18029 -13.93934 -13.79587 -13.53339 -13.40740 -13.32369 -13.22913 -12.92454 -12.64225 -12.42288 -12.23625 -12.02227 -11.91946 -11.63841 -11.43247 -10.96659 -10.88637 -10.88017 -10.52141 -10.29721 -10.22576 -9.92137 -9.78838 -9.69964 -9.45750 -9.15609 -8.95874 -8.57310 -7.04015 -5.82938 -3.12579 -0.22860 0.25760 1.57624 1.63670 2.46849 2.72680 3.22433 3.38592 3.42875 3.43980 3.45905 3.77055 3.85226 4.15379 4.19474 4.45635 4.52277 4.82036 4.92486 5.07214 5.14828 5.20225 5.26039 5.36413 5.37736 5.43668 5.55097 5.65635 5.71838 5.82470 5.94300 6.05688 6.18228 6.22311 6.26027 6.36681 6.39521 6.46278 6.67093 6.80740 6.96147 7.02618 7.31630 7.33441 7.62817 8.01353 8.35075 9.46476 10.03458 10.37716 11.39452 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.002921 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.574941 B = 9583.996585 C =10787.865057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.149 3.851 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 C -0.151 4.151 17 C 0.085 3.915 18 N -0.593 5.593 19 C 0.568 3.432 20 O -0.526 6.526 21 C -0.203 4.203 22 C 0.202 3.798 23 N -0.489 5.489 24 C 0.293 3.707 25 N -0.483 5.483 26 H 0.454 0.546 27 N 0.016 4.984 28 N -0.191 5.191 29 C -0.075 4.075 30 C 0.080 3.920 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.195 0.805 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 3.852 20.277 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.094 0.906 4 C -0.175 4.175 5 C 0.068 3.932 6 H 0.067 0.933 7 N -0.363 5.363 8 C -0.373 4.373 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.207 1.207 16 C -0.193 4.193 17 C -0.038 4.038 18 N -0.326 5.326 19 C 0.355 3.645 20 O -0.404 6.404 21 C -0.212 4.212 22 C 0.030 3.970 23 N -0.204 5.204 24 C 0.048 3.952 25 N -0.209 5.209 26 H 0.302 0.698 27 N 0.033 4.967 28 N -0.073 5.073 29 C -0.200 4.200 30 C 0.049 3.951 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.211 0.789 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.222 3.128 21.424 22.528 hybrid contribution 1.311 0.207 -1.043 1.688 sum -4.911 3.335 20.381 21.228 Atomic orbital electron populations 1.22231 0.92652 1.03803 1.00704 1.21387 0.95573 0.95028 0.83393 0.90624 1.22316 0.97537 1.01129 0.96520 1.20171 0.90935 0.94997 0.87072 0.93300 1.42430 1.12919 1.54473 1.26528 1.19218 0.89072 1.22467 1.06515 0.91131 1.24755 0.98136 0.99793 0.98152 1.69658 1.35354 1.33552 1.19353 0.86215 0.84580 0.77674 0.77848 1.21736 1.21782 1.20722 1.22711 1.01915 1.00155 0.94482 1.22551 0.79673 1.00940 1.00595 1.48075 1.07525 1.56809 1.20178 1.17730 0.86107 0.78290 0.82329 1.90873 1.14859 1.55418 1.79212 1.20896 0.97443 1.03311 0.99527 1.23762 0.91040 0.94181 0.88022 1.66787 1.35172 1.10936 1.07470 1.19632 0.92240 0.93856 0.89462 1.47536 1.19847 1.34349 1.19132 0.69772 1.81737 0.89592 1.08874 1.16448 1.74897 1.20675 1.12192 0.99494 1.20380 0.95958 1.03462 1.00243 1.21020 0.98619 0.88147 0.87331 0.90969 0.91330 0.93599 0.91641 0.90412 0.78223 0.93445 0.92024 0.90358 0.89522 0.90419 0.78917 0.81834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 7.59 37.16 0.28 -1.44 16 2 C 0.15 1.85 3.49 -67.60 -0.24 1.62 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.14 -2.05 4.84 -26.61 -0.13 -2.18 16 5 C 0.18 3.12 2.73 -67.89 -0.19 2.93 16 6 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 7 N -0.72 -16.88 5.12 -53.38 -0.27 -17.15 16 8 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 9 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 12 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C -0.15 -2.27 5.66 -26.60 -0.15 -2.42 16 17 C 0.09 0.91 4.69 -3.71 -0.02 0.89 16 18 N -0.59 -6.92 2.97 -166.37 -0.49 -7.42 16 19 C 0.57 6.84 7.38 -12.38 -0.09 6.75 16 20 O -0.53 -7.48 12.12 5.30 0.06 -7.41 16 21 C -0.20 -2.09 5.49 -104.87 -0.58 -2.66 16 22 C 0.20 1.83 8.58 -17.09 -0.15 1.68 16 23 N -0.49 -4.88 10.37 -12.03 -0.12 -5.00 16 24 C 0.29 3.03 8.49 -155.92 -1.32 1.70 16 25 N -0.48 -4.08 7.53 31.15 0.23 -3.85 16 26 H 0.45 2.21 8.96 -182.54 -1.64 0.58 16 27 N 0.02 0.17 13.82 60.35 0.83 1.01 16 28 N -0.19 -2.25 12.40 32.17 0.40 -1.85 16 29 C -0.07 -0.83 7.27 -84.74 -0.62 -1.45 16 30 C 0.08 0.83 9.76 -38.52 -0.38 0.45 16 31 H 0.07 1.02 6.75 -51.93 -0.35 0.67 16 32 H 0.07 0.89 6.75 -51.93 -0.35 0.54 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.38 9.75 7.80 -40.82 -0.32 9.43 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.09 0.79 4.09 -51.93 -0.21 0.58 16 41 H 0.08 0.68 8.00 -51.93 -0.42 0.26 16 42 H 0.19 1.32 5.31 -52.49 -0.28 1.04 16 43 H 0.16 1.55 7.95 -52.48 -0.42 1.14 16 LS Contribution 348.34 15.07 5.25 5.25 Total: -1.00 -31.64 348.34 -8.70 -40.34 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.48 Total: 7.12 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -3.81 Total: -1.01 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 1.30 Total: -60.85 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.06 Total: -7.41 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.64 -8.70 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044630603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.341 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds