Wall clock time and date at job start Tue Mar 31 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58621 * 2 1 4 4 C 1.53195 * 109.70348 * 120.35965 * 2 1 3 5 5 C 1.53041 * 109.31342 * 174.49626 * 4 2 1 6 6 H 1.08995 * 109.46484 * 58.63231 * 5 4 2 7 7 N 1.46494 * 109.46075 * 178.61333 * 5 4 2 8 8 C 1.36938 * 120.00205 * 204.99575 * 7 5 4 9 9 H 1.08003 * 119.99504 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00188 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00115 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99946 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47128 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47460 * 119.99810 * 12 10 8 15 15 H 1.48505 * 109.46775 * 239.99984 * 12 10 8 16 16 C 1.53041 * 109.53178 * 298.63012 * 5 4 2 17 17 C 1.53197 * 109.31379 * 61.36784 * 16 5 4 18 18 N 1.46925 * 108.77462 * 305.35999 * 17 16 5 19 19 C 1.34770 * 120.63186 * 233.58586 * 18 17 16 20 20 O 1.21551 * 119.99783 * 175.06241 * 19 18 17 21 21 C 1.47870 * 120.00177 * 355.06722 * 19 18 17 22 22 C 1.39458 * 121.11272 * 321.85090 * 21 19 18 23 23 C 1.38622 * 119.37437 * 180.02562 * 22 21 19 24 24 N 1.31580 * 121.63675 * 359.97438 * 23 22 21 25 25 C 1.32212 * 121.86910 * 0.02562 * 24 23 22 26 26 N 1.37215 * 134.67785 * 179.97438 * 25 24 23 27 27 H 0.96995 * 125.86196 * 359.97438 * 26 25 24 28 28 N 1.28774 * 108.25996 * 180.02562 * 26 25 24 29 29 N 1.28686 * 111.76172 * 0.02562 * 28 26 25 30 30 C 1.34394 * 109.15415 * 359.73263 * 29 28 26 31 31 H 1.08998 * 109.46854 * 176.19116 * 1 2 3 32 32 H 1.08998 * 109.47107 * 296.18649 * 1 2 3 33 33 H 1.08996 * 109.47182 * 56.18826 * 1 2 3 34 34 H 1.09005 * 109.49664 * 294.44356 * 4 2 1 35 35 H 1.08999 * 109.50237 * 54.50519 * 4 2 1 36 36 H 0.96999 * 120.00365 * 24.99605 * 7 5 4 37 37 H 0.97001 * 120.00086 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.50361 * 301.41446 * 16 5 4 39 39 H 1.09003 * 109.49747 * 181.31966 * 16 5 4 40 40 H 1.09003 * 109.58337 * 185.57775 * 17 16 5 41 41 H 1.08998 * 109.58375 * 65.14919 * 17 16 5 42 42 H 1.07999 * 120.31458 * 359.97438 * 22 21 19 43 43 H 1.07998 * 119.17948 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7290 1.2445 5 6 3.5706 -0.8444 1.1674 6 1 4.0072 0.1518 1.0962 7 7 4.0711 -1.5116 2.3717 8 6 5.3556 -1.2923 2.7924 9 1 5.9999 -0.6275 2.2360 10 6 5.8300 -1.9250 3.9332 11 7 5.0450 -2.7354 4.6109 12 14 7.5821 -1.6251 4.5074 13 1 8.2523 -0.6795 3.5790 14 1 7.5628 -1.0467 5.8750 15 1 8.3244 -2.9112 4.5243 16 6 3.9602 -1.6608 -0.0670 17 6 3.4654 -0.9424 -1.3264 18 7 2.0225 -0.6981 -1.1954 19 6 1.1672 -1.1060 -2.1536 20 8 -0.0310 -0.9787 -1.9930 21 6 1.6861 -1.7084 -3.4003 22 6 2.8469 -1.2265 -4.0047 23 6 3.3009 -1.8180 -5.1733 24 7 2.6638 -2.8261 -5.7293 25 6 1.5586 -3.3279 -5.2051 26 7 0.7027 -4.3438 -5.5487 27 1 0.7873 -4.9202 -6.3242 28 7 -0.2326 -4.3996 -4.6653 29 7 -0.0807 -3.5053 -3.7526 30 6 1.0272 -2.7912 -4.0149 31 1 -0.3633 -1.0254 -0.0683 32 1 -0.3633 0.4535 0.9222 33 1 -0.3633 0.5718 -0.8538 34 1 1.7689 -0.1674 2.1365 35 1 1.6076 -1.7256 1.2908 36 1 3.4926 -2.1089 2.8712 37 1 5.3764 -3.1772 5.4083 38 1 3.5037 -2.6489 -0.0088 39 1 5.0447 -1.7625 -0.1086 40 1 3.6524 -1.5665 -2.2003 41 1 3.9886 0.0076 -1.4345 42 1 3.3865 -0.3997 -3.5670 43 1 4.2003 -1.4426 -5.6385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044673277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:52 Heat of formation + Delta-G solvation = 133.617994 kcal Electronic energy + Delta-G solvation = -28445.958982 eV Core-core repulsion = 24529.933729 eV Total energy + Delta-G solvation = -3916.025253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.73483 -40.76426 -39.16747 -37.44952 -34.75394 -34.56742 -33.26619 -31.98368 -31.47574 -31.17707 -29.33355 -27.18737 -25.83165 -24.45264 -24.21619 -23.61306 -22.93160 -21.90974 -20.52675 -19.76440 -19.05784 -18.28424 -17.37239 -17.10779 -16.92754 -16.03579 -15.82415 -15.35248 -15.21462 -14.85164 -14.14394 -13.87798 -13.79397 -13.54079 -13.43765 -13.28616 -13.05657 -12.67160 -12.57776 -12.19823 -12.16489 -11.96928 -11.82413 -11.60858 -11.40279 -10.95294 -10.86701 -10.81967 -10.51025 -10.25716 -10.17363 -9.87397 -9.75580 -9.56924 -9.43069 -9.06051 -8.93655 -8.50578 -7.01367 -5.80730 -3.10319 -0.23858 0.50132 1.78979 1.88309 2.54573 2.77950 3.24082 3.39276 3.39786 3.44799 3.47724 3.86959 4.00086 4.14276 4.40585 4.53829 4.72997 4.89050 5.01489 5.10831 5.12981 5.25445 5.27463 5.38676 5.43965 5.48279 5.58736 5.75689 5.79099 5.87258 5.99511 6.10671 6.22598 6.23348 6.31221 6.41615 6.45248 6.50598 6.73461 6.85308 7.00289 7.10146 7.36629 7.65061 7.82653 8.08252 8.37194 9.48555 10.06094 10.40487 11.41766 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016115 B = 0.003066 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.110520 B = 9130.620063 C = 9772.155546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.071 0.929 10 C -0.013 4.013 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.152 4.152 17 C 0.092 3.908 18 N -0.591 5.591 19 C 0.555 3.445 20 O -0.504 6.504 21 C -0.001 4.001 22 C -0.147 4.147 23 C 0.162 3.838 24 N -0.462 5.462 25 C 0.216 3.784 26 N -0.406 5.406 27 H 0.458 0.542 28 N 0.004 4.996 29 N -0.215 5.215 30 C 0.000 4.000 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.165 0.835 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 3.357 -22.450 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 H 0.093 0.907 4 C -0.175 4.175 5 C 0.069 3.931 6 H 0.067 0.933 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.089 0.911 10 C -0.209 4.209 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.193 4.193 17 C -0.031 4.031 18 N -0.325 5.325 19 C 0.341 3.659 20 O -0.379 6.379 21 C -0.017 4.017 22 C -0.170 4.170 23 C -0.010 4.010 24 N -0.176 5.176 25 C -0.028 4.028 26 N -0.137 5.137 27 H 0.306 0.694 28 N 0.021 4.979 29 N -0.092 5.092 30 C -0.129 4.129 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.183 0.817 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.345 2.374 -22.531 23.528 hybrid contribution 1.710 0.157 0.376 1.758 sum -4.635 2.531 -22.156 22.777 Atomic orbital electron populations 1.22234 0.92654 1.03959 1.00640 1.21387 0.95588 0.94972 0.83348 0.90681 1.22316 0.97538 1.01160 0.96510 1.20163 0.90892 0.94967 0.87093 0.93327 1.42442 1.12971 1.54266 1.26720 1.19265 0.89088 1.22204 1.06609 0.91086 1.24758 0.98153 0.99785 0.98204 1.69673 1.35342 1.33419 1.19459 0.86145 0.84498 0.77279 0.78405 1.20532 1.21868 1.21911 1.22704 1.01784 1.00136 0.94691 1.22325 0.79368 1.00886 1.00484 1.48115 1.07605 1.56793 1.19973 1.17920 0.86387 0.79009 0.82624 1.90908 1.14637 1.54264 1.78140 1.19752 0.93419 0.92700 0.95877 1.22611 0.95118 1.02306 0.97007 1.22869 0.97735 0.89019 0.91354 1.66314 1.05591 1.12250 1.33443 1.19852 0.94498 0.93997 0.94452 1.44687 1.18313 1.26637 1.24020 0.69430 1.78237 1.08461 1.15918 0.95326 1.75512 1.14373 1.02596 1.16669 1.20110 0.96378 0.99856 0.96565 0.90876 0.93560 0.91364 0.90405 0.91648 0.78224 0.93512 0.92192 0.90428 0.89827 0.90756 0.81730 0.79964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 7.60 37.16 0.28 -1.66 16 2 C 0.15 2.05 3.49 -67.60 -0.24 1.81 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.14 -2.20 4.85 -26.61 -0.13 -2.33 16 5 C 0.18 3.27 2.73 -67.89 -0.19 3.08 16 6 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 7 N -0.72 -17.35 5.12 -53.39 -0.27 -17.62 16 8 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 9 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 12 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 C -0.15 -2.40 5.66 -26.61 -0.15 -2.55 16 17 C 0.09 1.06 4.90 -3.71 -0.02 1.04 16 18 N -0.59 -7.75 2.97 -166.31 -0.49 -8.24 16 19 C 0.55 7.91 7.32 -12.32 -0.09 7.82 16 20 O -0.50 -8.58 12.34 5.32 0.07 -8.51 16 21 C 0.00 -0.01 5.25 -104.51 -0.55 -0.56 16 22 C -0.15 -1.17 7.47 -38.99 -0.29 -1.46 16 23 C 0.16 1.11 11.14 -17.52 -0.20 0.91 16 24 N -0.46 -4.34 10.35 -12.38 -0.13 -4.47 16 25 C 0.22 2.38 8.56 -156.20 -1.34 1.05 16 26 N -0.41 -3.77 7.06 31.11 0.22 -3.55 16 27 H 0.46 2.25 8.96 -190.26 -1.71 0.54 16 28 N 0.00 0.04 13.29 60.35 0.80 0.85 16 29 N -0.22 -3.28 12.42 32.23 0.40 -2.88 16 30 C 0.00 0.00 7.03 -84.72 -0.60 -0.60 16 31 H 0.07 1.19 6.74 -51.93 -0.35 0.84 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.99 6.75 -51.93 -0.35 0.64 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 37 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.08 0.81 4.55 -51.93 -0.24 0.57 16 41 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 42 H 0.17 0.87 6.40 -52.49 -0.34 0.54 16 43 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -34.63 349.35 -8.83 -43.46 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.64 Total: 6.35 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.74 Total: -0.43 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: 1.25 Total: -62.86 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.51 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.63 -8.83 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044673277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.078 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds