Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58621 * 2 1 4 4 C 1.53195 * 109.70348 * 120.35965 * 2 1 3 5 5 C 1.53041 * 109.31342 * 174.49626 * 4 2 1 6 6 H 1.08995 * 109.46484 * 58.63231 * 5 4 2 7 7 N 1.46494 * 109.46075 * 178.61333 * 5 4 2 8 8 C 1.36938 * 120.00205 * 204.99575 * 7 5 4 9 9 H 1.08003 * 119.99504 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00188 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00115 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99946 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47128 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47460 * 119.99810 * 12 10 8 15 15 H 1.48505 * 109.46775 * 239.99984 * 12 10 8 16 16 C 1.53041 * 109.53178 * 298.63012 * 5 4 2 17 17 C 1.53197 * 109.31379 * 61.36784 * 16 5 4 18 18 N 1.46925 * 108.77462 * 305.35999 * 17 16 5 19 19 C 1.34770 * 120.63186 * 233.58586 * 18 17 16 20 20 O 1.21551 * 119.99783 * 175.06241 * 19 18 17 21 21 C 1.47870 * 120.00177 * 355.06722 * 19 18 17 22 22 C 1.39458 * 121.11272 * 321.85090 * 21 19 18 23 23 C 1.38622 * 119.37437 * 180.02562 * 22 21 19 24 24 N 1.31580 * 121.63675 * 359.97438 * 23 22 21 25 25 C 1.32212 * 121.86910 * 0.02562 * 24 23 22 26 26 N 1.37215 * 134.67785 * 179.97438 * 25 24 23 27 27 H 0.96995 * 125.86196 * 359.97438 * 26 25 24 28 28 N 1.28774 * 108.25996 * 180.02562 * 26 25 24 29 29 N 1.28686 * 111.76172 * 0.02562 * 28 26 25 30 30 C 1.34394 * 109.15415 * 359.73263 * 29 28 26 31 31 H 1.08998 * 109.46854 * 176.19116 * 1 2 3 32 32 H 1.08998 * 109.47107 * 296.18649 * 1 2 3 33 33 H 1.08996 * 109.47182 * 56.18826 * 1 2 3 34 34 H 1.09005 * 109.49664 * 294.44356 * 4 2 1 35 35 H 1.08999 * 109.50237 * 54.50519 * 4 2 1 36 36 H 0.96999 * 120.00365 * 24.99605 * 7 5 4 37 37 H 0.97001 * 120.00086 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.50361 * 301.41446 * 16 5 4 39 39 H 1.09003 * 109.49747 * 181.31966 * 16 5 4 40 40 H 1.09003 * 109.58337 * 185.57775 * 17 16 5 41 41 H 1.08998 * 109.58375 * 65.14919 * 17 16 5 42 42 H 1.07999 * 120.31458 * 359.97438 * 22 21 19 43 43 H 1.07998 * 119.17948 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7290 1.2445 5 6 3.5706 -0.8444 1.1674 6 1 4.0072 0.1518 1.0962 7 7 4.0711 -1.5116 2.3717 8 6 5.3556 -1.2923 2.7924 9 1 5.9999 -0.6275 2.2360 10 6 5.8300 -1.9250 3.9332 11 7 5.0450 -2.7354 4.6109 12 14 7.5821 -1.6251 4.5074 13 1 8.2523 -0.6795 3.5790 14 1 7.5628 -1.0467 5.8750 15 1 8.3244 -2.9112 4.5243 16 6 3.9602 -1.6608 -0.0670 17 6 3.4654 -0.9424 -1.3264 18 7 2.0225 -0.6981 -1.1954 19 6 1.1672 -1.1060 -2.1536 20 8 -0.0310 -0.9787 -1.9930 21 6 1.6861 -1.7084 -3.4003 22 6 2.8469 -1.2265 -4.0047 23 6 3.3009 -1.8180 -5.1733 24 7 2.6638 -2.8261 -5.7293 25 6 1.5586 -3.3279 -5.2051 26 7 0.7027 -4.3438 -5.5487 27 1 0.7873 -4.9202 -6.3242 28 7 -0.2326 -4.3996 -4.6653 29 7 -0.0807 -3.5053 -3.7526 30 6 1.0272 -2.7912 -4.0149 31 1 -0.3633 -1.0254 -0.0683 32 1 -0.3633 0.4535 0.9222 33 1 -0.3633 0.5718 -0.8538 34 1 1.7689 -0.1674 2.1365 35 1 1.6076 -1.7256 1.2908 36 1 3.4926 -2.1089 2.8712 37 1 5.3764 -3.1772 5.4083 38 1 3.5037 -2.6489 -0.0088 39 1 5.0447 -1.7625 -0.1086 40 1 3.6524 -1.5665 -2.2003 41 1 3.9886 0.0076 -1.4345 42 1 3.3865 -0.3997 -3.5670 43 1 4.2003 -1.4426 -5.6385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044673277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = 107.635546 kcal Electronic energy + Delta-G solvation = -28447.085665 eV Core-core repulsion = 24529.933729 eV Total energy + Delta-G solvation = -3917.151936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.55690 -41.79966 -39.96594 -38.72261 -36.20679 -35.56859 -34.32537 -33.66929 -32.43465 -31.93399 -30.96511 -28.49130 -26.70891 -25.95897 -25.14392 -24.62497 -24.25945 -22.95431 -21.75650 -20.93488 -19.89515 -19.25892 -19.01001 -18.20117 -17.76964 -17.08336 -16.82667 -16.58941 -16.33152 -16.05667 -15.48703 -15.43728 -15.03364 -14.61383 -14.55102 -14.38662 -14.12103 -13.83381 -13.52903 -13.43302 -13.30835 -13.08415 -12.90279 -12.85609 -12.79732 -12.59758 -12.49876 -12.08034 -12.01752 -11.94412 -11.67642 -11.35381 -10.96652 -10.88118 -10.33465 -10.28511 -10.07128 -9.62013 -8.97905 -7.90153 -5.19113 -1.02055 -0.20369 0.97053 1.10879 1.50874 1.51324 1.56803 1.61238 1.83750 2.45554 2.59526 2.64423 3.07817 3.25651 3.34765 3.43918 3.74512 3.76128 3.84231 3.99331 4.10072 4.15243 4.25042 4.31144 4.34794 4.37438 4.59956 4.64281 4.71695 4.74857 4.78776 4.85826 5.02506 5.09048 5.16734 5.20186 5.27961 5.44870 5.53890 5.58342 5.64272 5.70183 6.30637 6.32974 6.42307 6.97020 7.04297 7.36851 8.13037 8.35496 9.34025 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016115 B = 0.003066 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.110520 B = 9130.620063 C = 9772.155546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 H 0.104 0.896 4 C -0.126 4.126 5 C 0.173 3.827 6 H 0.061 0.939 7 N -0.741 5.741 8 C -0.229 4.229 9 H 0.086 0.914 10 C -0.082 4.082 11 N -0.975 5.975 12 Si 0.971 3.029 13 H -0.258 1.258 14 H -0.299 1.299 15 H -0.299 1.299 16 C -0.143 4.143 17 C 0.099 3.901 18 N -0.591 5.591 19 C 0.552 3.448 20 O -0.543 6.543 21 C -0.035 4.035 22 C -0.119 4.119 23 C 0.179 3.821 24 N -0.465 5.465 25 C 0.210 3.790 26 N -0.383 5.383 27 H 0.474 0.526 28 N -0.011 5.011 29 N -0.268 5.268 30 C -0.029 4.029 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.367 0.633 37 H 0.248 0.752 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.202 0.798 43 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 5.614 -25.437 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.122 0.878 4 C -0.165 4.165 5 C 0.065 3.935 6 H 0.079 0.921 7 N -0.379 5.379 8 C -0.361 4.361 9 H 0.104 0.896 10 C -0.274 4.274 11 N -0.627 5.627 12 Si 0.800 3.200 13 H -0.182 1.182 14 H -0.227 1.227 15 H -0.227 1.227 16 C -0.184 4.184 17 C -0.022 4.022 18 N -0.323 5.323 19 C 0.340 3.660 20 O -0.421 6.421 21 C -0.051 4.051 22 C -0.142 4.142 23 C 0.006 3.994 24 N -0.179 5.179 25 C -0.034 4.034 26 N -0.117 5.117 27 H 0.326 0.674 28 N 0.007 4.993 29 N -0.144 5.144 30 C -0.159 4.159 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.198 0.802 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.219 0.781 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.467 4.636 -25.597 26.243 hybrid contribution 0.838 -0.505 1.189 1.540 sum -2.629 4.131 -24.408 24.894 Atomic orbital electron populations 1.22071 0.93196 1.02098 1.01038 1.21331 0.95081 0.95903 0.82410 0.87815 1.22183 0.96256 1.00117 0.97986 1.20450 0.91827 0.95217 0.85971 0.92059 1.42726 1.12244 1.54412 1.28525 1.19723 0.89957 1.20620 1.05805 0.89613 1.25580 1.02038 1.00635 0.99132 1.69847 1.37253 1.35473 1.20101 0.85101 0.80153 0.76995 0.77709 1.18151 1.22700 1.22686 1.22491 1.01396 0.98784 0.95753 1.22470 0.78284 1.02781 0.98703 1.48150 1.08284 1.56466 1.19441 1.18285 0.85990 0.78283 0.83437 1.90888 1.16347 1.55624 1.79203 1.19738 0.95666 0.93807 0.95884 1.23111 0.92820 1.01836 0.96430 1.23869 0.98150 0.87069 0.90305 1.66510 1.04825 1.13057 1.33515 1.19959 0.95135 0.94288 0.93983 1.44686 1.17164 1.26116 1.23692 0.67380 1.78125 1.09454 1.15946 0.95814 1.75427 1.16353 1.04222 1.18362 1.20462 0.96532 1.00858 0.98042 0.93875 0.92529 0.91513 0.90935 0.94184 0.80181 0.94361 0.95034 0.90715 0.87411 0.86686 0.78143 0.74595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 7.60 71.98 0.55 -3.05 16 2 C 0.16 4.04 3.49 44.98 0.16 4.19 16 3 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 4 C -0.13 -4.08 4.85 30.67 0.15 -3.93 16 5 C 0.17 6.13 2.73 45.02 0.12 6.25 16 6 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 7 N -0.74 -35.72 5.12 -322.83 -1.65 -37.38 16 8 C -0.23 -11.99 9.93 84.03 0.83 -11.16 16 9 H 0.09 4.16 7.83 -2.91 -0.02 4.13 16 10 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 11 N -0.98 -59.59 13.06 21.65 0.28 -59.31 16 12 Si 0.97 44.69 29.55 68.60 2.03 46.72 16 13 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 14 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 16 C -0.14 -4.28 5.66 30.67 0.17 -4.11 16 17 C 0.10 1.88 4.90 86.36 0.42 2.31 16 18 N -0.59 -14.28 2.97 -798.37 -2.37 -16.65 16 19 C 0.55 15.33 7.32 86.79 0.64 15.97 16 20 O -0.54 -19.02 12.34 -3.88 -0.05 -19.07 16 21 C -0.03 -0.79 5.25 -19.79 -0.10 -0.89 16 22 C -0.12 -1.32 7.47 22.66 0.17 -1.15 16 23 C 0.18 1.46 11.14 84.82 0.94 2.41 16 24 N -0.47 -7.06 10.35 -193.09 -2.00 -9.05 16 25 C 0.21 4.32 8.56 134.17 1.15 5.47 16 26 N -0.38 -6.93 7.06 -55.47 -0.39 -7.32 16 27 H 0.47 4.23 8.96 -219.84 -1.97 2.26 16 28 N -0.01 -0.28 13.29 37.02 0.49 0.21 16 29 N -0.27 -8.57 12.42 -51.93 -0.64 -9.21 16 30 C -0.03 -0.78 7.03 40.06 0.28 -0.50 16 31 H 0.04 1.48 6.74 -2.39 -0.02 1.46 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.93 6.75 -2.39 -0.02 1.91 16 34 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.37 19.90 7.80 -92.71 -0.72 19.17 16 37 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 38 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.11 1.57 4.55 -2.39 -0.01 1.56 16 41 H 0.12 1.38 8.12 -2.39 -0.02 1.36 16 42 H 0.20 0.72 6.40 -2.91 -0.02 0.70 16 43 H 0.24 -0.64 8.06 -2.91 -0.02 -0.66 16 Total: -1.00 -81.38 349.35 0.03 -81.35 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -1.61 Total: 22.04 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.95 Total: 7.67 kcal Atomic # 7 Polarization: -132.43 SS G_CDS: -6.29 Total: -138.71 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.07 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -81.38 0.03 -81.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044673277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.981 kcal (2) G-P(sol) polarization free energy of solvation -81.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds