Wall clock time and date at job start Tue Mar 31 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.58509 * 2 1 4 4 C 1.53194 * 109.58692 * 120.28726 * 2 1 3 5 5 C 1.53039 * 109.31239 * 174.56434 * 4 2 1 6 6 H 1.08995 * 109.45692 * 178.62610 * 5 4 2 7 7 N 1.46498 * 109.46020 * 58.65507 * 5 4 2 8 8 C 1.36933 * 120.00095 * 154.97253 * 7 5 4 9 9 H 1.07994 * 119.99952 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00084 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99928 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99890 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47192 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47304 * 240.00148 * 12 10 8 15 15 H 1.48506 * 109.47061 * 120.00459 * 12 10 8 16 16 C 1.53035 * 109.52458 * 298.63610 * 5 4 2 17 17 C 1.53165 * 109.32575 * 61.37506 * 16 5 4 18 18 N 1.46922 * 108.76884 * 305.35106 * 17 16 5 19 19 C 1.34777 * 120.63307 * 233.58825 * 18 17 16 20 20 O 1.21539 * 120.00100 * 185.66963 * 19 18 17 21 21 C 1.47878 * 119.99907 * 5.66618 * 19 18 17 22 22 C 1.39451 * 121.11455 * 33.93067 * 21 19 18 23 23 C 1.38615 * 119.37825 * 179.80978 * 22 21 19 24 24 N 1.31591 * 121.63133 * 0.46635 * 23 22 21 25 25 C 1.32200 * 121.87056 * 359.77414 * 24 23 22 26 26 N 1.37212 * 134.67982 * 179.97438 * 25 24 23 27 27 H 0.96999 * 125.86813 * 0.04277 * 26 25 24 28 28 N 1.28784 * 108.26664 * 180.02562 * 26 25 24 29 29 N 1.28694 * 111.75379 * 0.02562 * 28 26 25 30 30 C 1.34390 * 109.15446 * 359.97438 * 29 28 26 31 31 H 1.09003 * 109.47484 * 292.69290 * 1 2 3 32 32 H 1.09001 * 109.47590 * 52.69365 * 1 2 3 33 33 H 1.09007 * 109.47476 * 172.69481 * 1 2 3 34 34 H 1.09003 * 109.49908 * 54.60740 * 4 2 1 35 35 H 1.08999 * 109.49535 * 294.51547 * 4 2 1 36 36 H 0.97006 * 119.99963 * 334.96543 * 7 5 4 37 37 H 0.97003 * 120.00398 * 359.97438 * 11 10 8 38 38 H 1.09003 * 109.49590 * 181.30562 * 16 5 4 39 39 H 1.08993 * 109.50302 * 301.40982 * 16 5 4 40 40 H 1.09007 * 109.59250 * 185.56122 * 17 16 5 41 41 H 1.09003 * 109.70712 * 65.21037 * 17 16 5 42 42 H 1.08001 * 120.31301 * 0.02842 * 22 21 19 43 43 H 1.08000 * 119.18823 * 180.24091 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5678 -0.8434 1.1728 6 1 3.9380 -1.3394 2.0701 7 7 4.1547 0.4955 1.0779 8 6 5.4379 0.7123 1.5038 9 1 6.0174 -0.1038 1.9094 10 6 5.9943 1.9809 1.4133 11 7 5.2882 2.9753 0.9186 12 14 7.7445 2.2768 1.9951 13 1 8.3180 1.0058 2.5058 14 1 7.7407 3.2901 3.0806 15 1 8.5665 2.7698 0.8607 16 6 3.9600 -1.6608 -0.0601 17 6 3.4684 -0.9436 -1.3210 18 7 2.0253 -0.6991 -1.1936 19 6 1.1721 -1.1078 -2.1535 20 8 -0.0045 -0.8103 -2.0878 21 6 1.6675 -1.9183 -3.2869 22 6 2.7031 -2.8368 -3.1176 23 6 3.1367 -3.5806 -4.2040 24 7 2.6011 -3.4360 -5.3973 25 6 1.6202 -2.5790 -5.6230 26 7 0.8871 -2.2203 -6.7260 27 1 0.9881 -2.5856 -7.6189 28 7 0.0417 -1.3155 -6.3720 29 7 0.1425 -1.0320 -5.1208 30 6 1.1135 -1.7838 -4.5750 31 1 -0.3634 0.3965 0.9481 32 1 -0.3634 0.6228 -0.8174 33 1 -0.3634 -1.0194 -0.1307 34 1 1.6048 -1.7247 1.2921 35 1 1.7638 -0.1656 2.1371 36 1 3.6344 1.2284 0.7131 37 1 4.3792 2.8218 0.6168 38 1 5.0445 -1.7625 -0.0993 39 1 3.5033 -2.6488 -0.0020 40 1 3.6575 -1.5684 -2.1941 41 1 3.9917 0.0062 -1.4313 42 1 3.1607 -2.9699 -2.1484 43 1 3.9363 -4.2938 -4.0686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044673279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:55 Heat of formation + Delta-G solvation = 143.955023 kcal Electronic energy + Delta-G solvation = -28987.106088 eV Core-core repulsion = 25071.529082 eV Total energy + Delta-G solvation = -3915.577006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.69334 -40.77720 -39.12184 -37.61118 -34.73335 -34.50038 -33.28911 -32.13162 -31.38367 -31.11638 -28.97020 -27.24012 -25.76741 -24.38058 -24.04605 -23.56300 -23.40593 -21.94867 -20.73448 -19.44150 -18.76841 -18.24704 -17.36747 -17.14514 -16.86844 -16.05882 -15.83086 -15.73289 -15.16402 -14.56741 -14.11577 -13.90864 -13.82012 -13.64246 -13.38766 -13.35750 -13.14625 -12.71126 -12.57630 -12.19666 -12.02024 -11.96512 -11.74122 -11.61515 -11.33579 -10.86693 -10.78176 -10.61323 -10.39495 -10.33806 -10.09001 -10.04883 -9.48622 -9.36846 -9.22938 -9.04085 -8.94448 -8.32850 -7.10924 -6.15148 -3.16637 -0.20062 0.54202 1.82791 1.92259 2.64573 2.87585 3.31562 3.44330 3.47865 3.53988 3.63005 3.92396 4.07049 4.20447 4.46505 4.61631 4.79824 4.94830 5.08136 5.16017 5.17015 5.24383 5.33669 5.43305 5.50236 5.57194 5.59991 5.72622 5.83259 5.87518 5.95834 6.03538 6.16713 6.25380 6.27144 6.34624 6.45891 6.59211 6.61340 6.68709 6.90321 7.14635 7.50111 7.76120 7.86539 8.18028 8.69515 9.15525 10.02065 10.16856 11.32510 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.003469 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.461955 B = 8069.902060 C = 8685.851698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.148 3.852 3 H 0.078 0.922 4 C -0.135 4.135 5 C 0.180 3.820 6 H 0.054 0.946 7 N -0.733 5.733 8 C -0.333 4.333 9 H 0.066 0.934 10 C -0.043 4.043 11 N -0.942 5.942 12 Si 1.083 2.917 13 H -0.295 1.295 14 H -0.294 1.294 15 H -0.294 1.294 16 C -0.150 4.150 17 C 0.085 3.915 18 N -0.587 5.587 19 C 0.552 3.448 20 O -0.507 6.507 21 C -0.001 4.001 22 C -0.152 4.152 23 C 0.162 3.838 24 N -0.463 5.463 25 C 0.215 3.785 26 N -0.407 5.407 27 H 0.457 0.543 28 N 0.002 4.998 29 N -0.214 5.214 30 C 0.000 4.000 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.367 0.633 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.173 0.827 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 -15.680 -10.543 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 H 0.095 0.905 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.072 0.928 7 N -0.377 5.377 8 C -0.464 4.464 9 H 0.084 0.916 10 C -0.241 4.241 11 N -0.588 5.588 12 Si 0.915 3.085 13 H -0.221 1.221 14 H -0.221 1.221 15 H -0.221 1.221 16 C -0.191 4.191 17 C -0.036 4.036 18 N -0.320 5.320 19 C 0.338 3.662 20 O -0.382 6.382 21 C -0.017 4.017 22 C -0.175 4.175 23 C -0.010 4.010 24 N -0.176 5.176 25 C -0.029 4.029 26 N -0.137 5.137 27 H 0.305 0.695 28 N 0.019 4.981 29 N -0.090 5.090 30 C -0.129 4.129 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.201 0.799 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.190 0.810 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.682 -13.987 -11.358 18.892 hybrid contribution -0.479 -1.433 0.025 1.511 sum -6.160 -15.420 -11.333 20.104 Atomic orbital electron populations 1.22206 0.92883 1.03402 1.00984 1.21280 0.95089 0.95832 0.83194 0.90453 1.22286 0.97426 1.00491 0.97191 1.20109 0.90229 0.87717 0.95020 0.92841 1.42533 1.14208 1.04746 1.76213 1.20077 0.90504 0.97018 1.38755 0.91646 1.25723 1.06031 0.91592 1.00749 1.70830 1.11002 1.32503 1.44431 0.83175 0.74468 0.74789 0.76108 1.22132 1.22070 1.22101 1.22527 1.01731 0.97915 0.96957 1.22414 0.79083 1.02841 0.99276 1.48054 1.07628 1.56563 1.19758 1.17893 0.86186 0.80413 0.81687 1.90883 1.16367 1.55358 1.75639 1.19772 0.94105 0.96412 0.91451 1.22801 0.95808 0.96143 1.02749 1.22895 0.96749 0.96019 0.85295 1.66314 1.08154 1.17718 1.25447 1.19849 0.96810 0.98391 0.87812 1.44671 1.26473 1.31078 1.11501 0.69476 1.78235 1.08557 1.01852 1.09484 1.75512 1.15283 1.19917 0.98329 1.20105 0.98607 0.99246 0.94898 0.93575 0.90641 0.91829 0.91762 0.90564 0.79893 0.93366 0.90361 0.92961 0.89233 0.89812 0.80955 0.79922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 7.61 37.16 0.28 -1.84 16 2 C 0.15 2.38 3.19 -67.60 -0.22 2.17 16 3 H 0.08 1.41 6.64 -51.93 -0.34 1.06 16 4 C -0.13 -2.07 5.07 -26.61 -0.13 -2.21 16 5 C 0.18 3.15 3.10 -67.89 -0.21 2.94 16 6 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 7 N -0.73 -16.48 4.31 -53.39 -0.23 -16.71 16 8 C -0.33 -8.60 9.93 -15.06 -0.15 -8.75 16 9 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 10 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 11 N -0.94 -28.02 13.70 55.49 0.76 -27.26 16 12 Si 1.08 24.94 29.92 -169.99 -5.09 19.85 16 13 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 C -0.15 -2.17 5.46 -26.63 -0.15 -2.31 16 17 C 0.09 1.23 5.31 -3.73 -0.02 1.21 16 18 N -0.59 -8.96 2.97 -166.33 -0.49 -9.45 16 19 C 0.55 8.77 7.25 -12.31 -0.09 8.68 16 20 O -0.51 -9.31 12.43 5.33 0.07 -9.24 16 21 C 0.00 -0.01 5.47 -104.51 -0.57 -0.58 16 22 C -0.15 -1.47 7.52 -38.99 -0.29 -1.76 16 23 C 0.16 1.31 11.14 -17.52 -0.20 1.12 16 24 N -0.46 -4.75 10.35 -12.38 -0.13 -4.88 16 25 C 0.21 2.54 8.56 -156.21 -1.34 1.21 16 26 N -0.41 -4.00 7.06 31.11 0.22 -3.78 16 27 H 0.46 2.46 8.96 -190.25 -1.71 0.75 16 28 N 0.00 0.02 13.29 60.35 0.80 0.82 16 29 N -0.21 -3.41 12.36 32.23 0.40 -3.01 16 30 C 0.00 0.00 7.00 -84.72 -0.59 -0.59 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.29 6.69 -51.93 -0.35 0.94 16 33 H 0.06 1.01 6.82 -51.93 -0.35 0.65 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.37 8.71 4.90 -40.82 -0.20 8.51 16 37 H 0.25 7.49 6.78 -40.82 -0.28 7.22 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.61 7.71 -51.93 -0.40 0.21 16 40 H 0.09 1.04 3.50 -51.93 -0.18 0.85 16 41 H 0.08 1.50 7.74 -51.93 -0.40 1.10 16 42 H 0.17 1.38 5.21 -52.49 -0.27 1.10 16 43 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 341.31 15.07 5.14 5.14 Total: -1.00 -33.97 341.31 -8.54 -42.51 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.23 Total: 8.02 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -3.77 Total: -2.01 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: 1.33 Total: -64.27 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.07 Total: -9.24 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.09 Total: 19.85 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.97 -8.54 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044673279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.463 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds