Wall clock time and date at job start Tue Mar 31 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09009 * 109.70182 * 2 1 4 4 C 1.53192 * 109.58899 * 239.64676 * 2 1 3 5 5 C 1.53031 * 109.31620 * 185.57606 * 4 2 1 6 6 H 1.09005 * 109.45502 * 181.37726 * 5 4 2 7 7 N 1.46502 * 109.46019 * 301.34452 * 5 4 2 8 8 C 1.36940 * 119.99897 * 205.06198 * 7 5 4 9 9 H 1.08000 * 120.00016 * 359.73187 * 8 7 5 10 10 C 1.38808 * 119.99851 * 179.72118 * 8 7 5 11 11 N 1.31627 * 119.99941 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00208 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.46981 * 89.99407 * 12 10 8 14 14 H 1.48498 * 109.46983 * 209.99735 * 12 10 8 15 15 H 1.48497 * 109.46749 * 329.99551 * 12 10 8 16 16 C 1.53042 * 109.53969 * 61.36430 * 5 4 2 17 17 C 1.53193 * 109.31088 * 298.63693 * 16 5 4 18 18 N 1.46923 * 108.77613 * 54.63368 * 17 16 5 19 19 C 1.34777 * 120.63254 * 126.41484 * 18 17 16 20 20 O 1.21546 * 120.00124 * 175.89832 * 19 18 17 21 21 C 1.47873 * 119.99949 * 355.88922 * 19 18 17 22 22 C 1.39453 * 121.11266 * 34.32197 * 21 19 18 23 23 C 1.38617 * 119.37582 * 180.02562 * 22 21 19 24 24 N 1.31587 * 121.63599 * 0.02562 * 23 22 21 25 25 C 1.32207 * 121.86851 * 359.97438 * 24 23 22 26 26 N 1.37205 * 134.67850 * 179.97438 * 25 24 23 27 27 H 0.97008 * 125.87096 * 0.02562 * 26 25 24 28 28 N 1.28783 * 108.26639 * 180.02562 * 26 25 24 29 29 N 1.28692 * 111.75558 * 0.02562 * 28 26 25 30 30 C 1.34395 * 109.15048 * 359.72986 * 29 28 26 31 31 H 1.09004 * 109.47356 * 306.75635 * 1 2 3 32 32 H 1.09007 * 109.47558 * 66.75362 * 1 2 3 33 33 H 1.09004 * 109.47601 * 186.75238 * 1 2 3 34 34 H 1.09007 * 109.49700 * 65.62113 * 4 2 1 35 35 H 1.09002 * 109.49696 * 305.53145 * 4 2 1 36 36 H 0.96995 * 119.99860 * 24.79753 * 7 5 4 37 37 H 0.96998 * 119.99549 * 179.97438 * 11 10 8 38 38 H 1.09004 * 109.49498 * 58.58462 * 16 5 4 39 39 H 1.09003 * 109.50222 * 178.68305 * 16 5 4 40 40 H 1.09007 * 109.58611 * 174.41562 * 17 16 5 41 41 H 1.08999 * 109.58693 * 294.70155 * 17 16 5 42 42 H 1.08003 * 120.31481 * 359.97341 * 22 21 19 43 43 H 1.08004 * 119.18390 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 3.5674 -0.8479 -1.1702 6 1 3.9376 -1.3449 -2.0670 7 7 4.1569 0.4899 -1.0750 8 6 5.4409 0.7042 -1.5002 9 1 6.0203 -0.1140 -1.9018 10 6 5.9974 1.9729 -1.4154 11 7 7.2314 2.1790 -1.8246 12 14 4.9953 3.3880 -0.7205 13 1 5.2045 3.4686 0.7475 14 1 5.4293 4.6594 -1.3530 15 1 3.5554 3.1606 -1.0035 16 6 3.9569 -1.6656 0.0634 17 6 3.4650 -0.9469 1.3237 18 7 2.0225 -0.6996 1.1944 19 6 1.1674 -1.1062 2.1536 20 8 -0.0135 -0.8305 2.0716 21 6 1.6659 -1.8879 3.3056 22 6 2.9329 -1.6555 3.8399 23 6 3.3642 -2.4099 4.9199 24 7 2.6073 -3.3432 5.4561 25 6 1.3974 -3.6110 4.9952 26 7 0.4091 -4.4987 5.3381 27 1 0.4512 -5.1452 6.0601 28 7 -0.5843 -4.3261 4.5368 29 7 -0.3495 -3.3954 3.6796 30 6 0.8753 -2.8892 3.9028 31 1 -0.3634 0.6150 0.8234 32 1 -0.3634 0.4056 -0.9443 33 1 -0.3634 -1.0205 0.1208 34 1 1.7659 -0.1667 -2.1369 35 1 1.6029 -1.7253 -1.2914 36 1 3.6365 1.2246 -0.7143 37 1 7.6201 3.0657 -1.7656 38 1 3.4983 -2.6528 0.0051 39 1 5.0412 -1.7695 0.1036 40 1 3.6517 -1.5718 2.1971 41 1 3.9921 0.0009 1.4330 42 1 3.5724 -0.8955 3.4158 43 1 4.3461 -2.2276 5.3311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044673281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:58 Heat of formation + Delta-G solvation = 152.700981 kcal Electronic energy + Delta-G solvation = -29053.358360 eV Core-core repulsion = 25138.160608 eV Total energy + Delta-G solvation = -3915.197752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.72610 -40.82862 -39.16430 -37.65099 -34.77919 -34.45084 -33.32160 -32.01718 -31.42179 -31.14728 -29.74511 -27.43974 -25.82777 -24.59281 -24.09151 -23.64236 -23.13186 -21.98439 -20.73646 -19.27798 -18.97918 -18.12507 -17.80588 -17.21801 -16.92674 -16.05709 -15.87974 -15.36795 -15.28615 -14.62914 -14.37602 -13.98271 -13.69313 -13.54623 -13.47270 -13.25695 -13.10049 -12.64546 -12.55247 -12.34325 -12.16847 -12.07770 -11.88931 -11.60321 -11.31508 -11.07825 -10.97107 -10.84110 -10.54814 -10.32046 -10.17719 -10.04562 -9.64908 -9.51618 -9.41944 -9.06598 -8.94046 -8.40013 -7.35997 -5.84655 -3.20864 -0.22504 0.52017 1.79698 1.88708 2.60103 2.82442 3.28149 3.29558 3.32891 3.39891 3.40863 3.89526 4.03928 4.17291 4.44627 4.51012 4.77480 4.90304 5.03875 5.09044 5.13447 5.20092 5.27380 5.39182 5.42797 5.50808 5.55461 5.65952 5.81134 5.81686 5.86706 5.99060 6.13552 6.23319 6.24668 6.33020 6.41210 6.53939 6.59763 6.65797 6.86195 7.12753 7.43346 7.82989 7.91449 8.12870 8.34320 9.12215 9.84745 10.04312 11.33550 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.003682 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.696025 B = 7602.471863 C = 8263.015123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.146 3.854 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.179 3.821 6 H 0.061 0.939 7 N -0.746 5.746 8 C -0.244 4.244 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.878 3.122 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.149 4.149 17 C 0.078 3.922 18 N -0.588 5.588 19 C 0.553 3.447 20 O -0.507 6.507 21 C -0.002 4.002 22 C -0.157 4.157 23 C 0.164 3.836 24 N -0.463 5.463 25 C 0.215 3.785 26 N -0.407 5.407 27 H 0.457 0.543 28 N 0.001 4.999 29 N -0.215 5.215 30 C 0.000 4.000 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.360 0.640 37 H 0.260 0.740 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.179 0.821 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.547 -11.562 14.103 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 H 0.093 0.907 4 C -0.177 4.177 5 C 0.069 3.931 6 H 0.079 0.921 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.709 3.291 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.190 4.190 17 C -0.044 4.044 18 N -0.321 5.321 19 C 0.339 3.661 20 O -0.383 6.383 21 C -0.018 4.018 22 C -0.180 4.180 23 C -0.008 4.008 24 N -0.177 5.177 25 C -0.029 4.029 26 N -0.137 5.137 27 H 0.305 0.695 28 N 0.018 4.982 29 N -0.091 5.091 30 C -0.128 4.128 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.196 0.804 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -11.167 -12.363 14.182 21.878 hybrid contribution 0.401 1.411 0.599 1.584 sum -10.766 -10.952 14.780 21.314 Atomic orbital electron populations 1.22224 0.92718 1.03743 1.00854 1.21318 0.95327 0.95484 0.83488 0.90678 1.22306 0.97399 1.00804 0.97144 1.20163 0.90127 0.87151 0.95648 0.92132 1.42880 1.14165 1.05138 1.76840 1.19065 0.87946 0.95867 1.34487 0.89122 1.24652 0.96039 0.97027 1.01155 1.69695 1.13548 1.21989 1.52743 0.86658 0.79895 0.83511 0.79080 1.21041 1.21686 1.20366 1.22489 1.02014 0.98027 0.96433 1.22705 0.79081 1.02331 1.00262 1.48101 1.07782 1.56352 1.19893 1.17894 0.86068 0.80059 0.82101 1.90891 1.15810 1.55627 1.75943 1.19736 0.92528 0.93599 0.95952 1.22987 0.95057 1.02671 0.97270 1.22935 0.98504 0.88352 0.90990 1.66327 1.02343 1.18384 1.30615 1.19851 0.92019 0.94896 0.96093 1.44670 1.10170 1.30071 1.28802 0.69471 1.78227 1.09449 1.12462 0.98094 1.75499 1.12818 1.04661 1.16154 1.20075 0.94243 1.00288 0.98238 0.90833 0.93601 0.91369 0.90386 0.91459 0.80615 0.93016 0.92890 0.90022 0.88518 0.89415 0.80397 0.79818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 7.61 37.15 0.28 -1.76 16 2 C 0.15 2.21 3.20 -67.60 -0.22 2.00 16 3 H 0.08 1.23 6.64 -51.92 -0.34 0.89 16 4 C -0.14 -2.06 5.07 -26.62 -0.13 -2.19 16 5 C 0.18 3.05 3.10 -67.89 -0.21 2.84 16 6 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 7 N -0.75 -15.67 4.11 -53.39 -0.22 -15.89 16 8 C -0.24 -6.27 10.41 -15.06 -0.16 -6.43 16 9 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 10 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -27.81 13.97 55.49 0.78 -27.04 16 12 Si 0.88 20.83 27.74 -169.99 -4.71 16.12 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 16 C -0.15 -2.17 5.78 -26.61 -0.15 -2.32 16 17 C 0.08 1.02 4.82 -3.71 -0.02 1.00 16 18 N -0.59 -8.43 2.97 -166.32 -0.49 -8.93 16 19 C 0.55 8.30 7.31 -12.32 -0.09 8.21 16 20 O -0.51 -8.90 12.37 5.33 0.07 -8.83 16 21 C 0.00 -0.02 5.56 -104.51 -0.58 -0.60 16 22 C -0.16 -1.45 7.58 -38.99 -0.30 -1.75 16 23 C 0.16 1.28 11.14 -17.52 -0.20 1.09 16 24 N -0.46 -4.56 10.35 -12.38 -0.13 -4.69 16 25 C 0.21 2.41 8.56 -156.21 -1.34 1.08 16 26 N -0.41 -3.74 7.06 31.11 0.22 -3.52 16 27 H 0.46 2.22 8.96 -190.24 -1.71 0.51 16 28 N 0.00 0.01 13.29 60.35 0.80 0.81 16 29 N -0.22 -3.22 12.37 32.23 0.40 -2.82 16 30 C 0.00 0.00 6.99 -84.72 -0.59 -0.59 16 31 H 0.07 1.17 6.68 -51.93 -0.35 0.82 16 32 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.07 1.08 6.81 -51.93 -0.35 0.73 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.36 7.57 3.92 -40.82 -0.16 7.41 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.10 1.00 3.44 -52.60 -0.18 0.82 16 41 H 0.09 1.28 7.74 -51.93 -0.40 0.87 16 42 H 0.18 1.37 5.45 -52.48 -0.29 1.08 16 43 H 0.18 0.70 8.06 -52.48 -0.42 0.28 16 LS Contribution 340.44 15.07 5.13 5.13 Total: -1.00 -33.66 340.44 -8.29 -41.95 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.33 Total: 7.05 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -3.79 Total: 0.67 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: 1.35 Total: -62.09 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.71 Total: 16.12 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.66 -8.29 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044673281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.649 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds