Wall clock time and date at job start Tue Mar 31 2020 05:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09009 * 109.70182 * 2 1 4 4 C 1.53192 * 109.58899 * 239.64676 * 2 1 3 5 5 C 1.53031 * 109.31620 * 185.57606 * 4 2 1 6 6 H 1.09005 * 109.45502 * 181.37726 * 5 4 2 7 7 N 1.46502 * 109.46019 * 301.34452 * 5 4 2 8 8 C 1.36940 * 119.99897 * 205.06198 * 7 5 4 9 9 H 1.08000 * 120.00016 * 359.73187 * 8 7 5 10 10 C 1.38808 * 119.99851 * 179.72118 * 8 7 5 11 11 N 1.31627 * 119.99941 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00208 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.46981 * 89.99407 * 12 10 8 14 14 H 1.48498 * 109.46983 * 209.99735 * 12 10 8 15 15 H 1.48497 * 109.46749 * 329.99551 * 12 10 8 16 16 C 1.53042 * 109.53969 * 61.36430 * 5 4 2 17 17 C 1.53193 * 109.31088 * 298.63693 * 16 5 4 18 18 N 1.46923 * 108.77613 * 54.63368 * 17 16 5 19 19 C 1.34777 * 120.63254 * 126.41484 * 18 17 16 20 20 O 1.21546 * 120.00124 * 175.89832 * 19 18 17 21 21 C 1.47873 * 119.99949 * 355.88922 * 19 18 17 22 22 C 1.39453 * 121.11266 * 34.32197 * 21 19 18 23 23 C 1.38617 * 119.37582 * 180.02562 * 22 21 19 24 24 N 1.31587 * 121.63599 * 0.02562 * 23 22 21 25 25 C 1.32207 * 121.86851 * 359.97438 * 24 23 22 26 26 N 1.37205 * 134.67850 * 179.97438 * 25 24 23 27 27 H 0.97008 * 125.87096 * 0.02562 * 26 25 24 28 28 N 1.28783 * 108.26639 * 180.02562 * 26 25 24 29 29 N 1.28692 * 111.75558 * 0.02562 * 28 26 25 30 30 C 1.34395 * 109.15048 * 359.72986 * 29 28 26 31 31 H 1.09004 * 109.47356 * 306.75635 * 1 2 3 32 32 H 1.09007 * 109.47558 * 66.75362 * 1 2 3 33 33 H 1.09004 * 109.47601 * 186.75238 * 1 2 3 34 34 H 1.09007 * 109.49700 * 65.62113 * 4 2 1 35 35 H 1.09002 * 109.49696 * 305.53145 * 4 2 1 36 36 H 0.96995 * 119.99860 * 24.79753 * 7 5 4 37 37 H 0.96998 * 119.99549 * 179.97438 * 11 10 8 38 38 H 1.09004 * 109.49498 * 58.58462 * 16 5 4 39 39 H 1.09003 * 109.50222 * 178.68305 * 16 5 4 40 40 H 1.09007 * 109.58611 * 174.41562 * 17 16 5 41 41 H 1.08999 * 109.58693 * 294.70155 * 17 16 5 42 42 H 1.08003 * 120.31481 * 359.97341 * 22 21 19 43 43 H 1.08004 * 119.18390 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 3.5674 -0.8479 -1.1702 6 1 3.9376 -1.3449 -2.0670 7 7 4.1569 0.4899 -1.0750 8 6 5.4409 0.7042 -1.5002 9 1 6.0203 -0.1140 -1.9018 10 6 5.9974 1.9729 -1.4154 11 7 7.2314 2.1790 -1.8246 12 14 4.9953 3.3880 -0.7205 13 1 5.2045 3.4686 0.7475 14 1 5.4293 4.6594 -1.3530 15 1 3.5554 3.1606 -1.0035 16 6 3.9569 -1.6656 0.0634 17 6 3.4650 -0.9469 1.3237 18 7 2.0225 -0.6996 1.1944 19 6 1.1674 -1.1062 2.1536 20 8 -0.0135 -0.8305 2.0716 21 6 1.6659 -1.8879 3.3056 22 6 2.9329 -1.6555 3.8399 23 6 3.3642 -2.4099 4.9199 24 7 2.6073 -3.3432 5.4561 25 6 1.3974 -3.6110 4.9952 26 7 0.4091 -4.4987 5.3381 27 1 0.4512 -5.1452 6.0601 28 7 -0.5843 -4.3261 4.5368 29 7 -0.3495 -3.3954 3.6796 30 6 0.8753 -2.8892 3.9028 31 1 -0.3634 0.6150 0.8234 32 1 -0.3634 0.4056 -0.9443 33 1 -0.3634 -1.0205 0.1208 34 1 1.7659 -0.1667 -2.1369 35 1 1.6029 -1.7253 -1.2914 36 1 3.6365 1.2246 -0.7143 37 1 7.6201 3.0657 -1.7656 38 1 3.4983 -2.6528 0.0051 39 1 5.0412 -1.7695 0.1036 40 1 3.6517 -1.5718 2.1971 41 1 3.9921 0.0009 1.4330 42 1 3.5724 -0.8955 3.4158 43 1 4.3461 -2.2276 5.3311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044673281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:57 Heat of formation + Delta-G solvation = 128.310937 kcal Electronic energy + Delta-G solvation = -29054.415992 eV Core-core repulsion = 25138.160608 eV Total energy + Delta-G solvation = -3916.255384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.57179 -41.92780 -40.02786 -38.93462 -36.05395 -35.60741 -34.41614 -33.74529 -32.40510 -31.96488 -31.39712 -28.66464 -26.76943 -25.68616 -25.24075 -24.86319 -24.49611 -23.04510 -21.84210 -20.37970 -19.98910 -19.72768 -19.07748 -18.19255 -17.78373 -17.19000 -16.78105 -16.71147 -16.37658 -16.10844 -15.69575 -15.31515 -15.03091 -14.69952 -14.55821 -14.35566 -14.25453 -14.01967 -13.78074 -13.54175 -13.34824 -13.09835 -12.96006 -12.84239 -12.77245 -12.55171 -12.46548 -12.07545 -11.97744 -11.85835 -11.68365 -11.47374 -10.99071 -10.89170 -10.38865 -10.27997 -10.03883 -9.62307 -9.22329 -7.94776 -5.27071 -1.06591 -0.25422 0.95839 1.08869 1.41954 1.44112 1.51097 1.58256 1.78810 2.41739 2.53444 2.61270 3.04647 3.22610 3.32930 3.37215 3.61799 3.71072 3.80945 3.93195 3.98613 4.03279 4.23092 4.26005 4.31300 4.33664 4.44299 4.60356 4.66065 4.70586 4.80710 4.89559 5.02082 5.09331 5.14933 5.21843 5.23539 5.29879 5.40585 5.63049 5.66252 5.87447 6.28353 6.32121 6.39028 6.96244 7.01308 7.15485 7.91352 8.10234 9.26792 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.003682 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.696025 B = 7602.471863 C = 8263.015123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.145 3.855 3 H 0.065 0.935 4 C -0.127 4.127 5 C 0.171 3.829 6 H 0.049 0.951 7 N -0.745 5.745 8 C -0.216 4.216 9 H 0.062 0.938 10 C -0.058 4.058 11 N -0.984 5.984 12 Si 0.940 3.060 13 H -0.273 1.273 14 H -0.304 1.304 15 H -0.258 1.258 16 C -0.142 4.142 17 C 0.080 3.920 18 N -0.587 5.587 19 C 0.552 3.448 20 O -0.540 6.540 21 C -0.029 4.029 22 C -0.138 4.138 23 C 0.180 3.820 24 N -0.462 5.462 25 C 0.211 3.789 26 N -0.382 5.382 27 H 0.475 0.525 28 N -0.006 5.006 29 N -0.262 5.262 30 C -0.024 4.024 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.363 0.637 37 H 0.255 0.745 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.130 0.870 41 H 0.078 0.922 42 H 0.198 0.802 43 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.561 -12.232 16.258 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.042 3.958 3 H 0.083 0.917 4 C -0.166 4.166 5 C 0.063 3.937 6 H 0.067 0.933 7 N -0.389 5.389 8 C -0.347 4.347 9 H 0.080 0.920 10 C -0.250 4.250 11 N -0.635 5.635 12 Si 0.768 3.232 13 H -0.199 1.199 14 H -0.232 1.232 15 H -0.183 1.183 16 C -0.182 4.182 17 C -0.040 4.040 18 N -0.320 5.320 19 C 0.340 3.660 20 O -0.418 6.418 21 C -0.045 4.045 22 C -0.161 4.161 23 C 0.007 3.993 24 N -0.176 5.176 25 C -0.032 4.032 26 N -0.116 5.116 27 H 0.327 0.673 28 N 0.011 4.989 29 N -0.137 5.137 30 C -0.153 4.153 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.197 0.803 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.147 0.853 41 H 0.097 0.903 42 H 0.215 0.785 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -11.247 -13.107 16.369 23.795 hybrid contribution 0.456 1.489 -0.047 1.558 sum -10.791 -11.618 16.321 22.755 Atomic orbital electron populations 1.22052 0.92463 1.02714 1.01011 1.21265 0.95446 0.95093 0.83990 0.91669 1.22200 0.95564 1.01643 0.97214 1.20375 0.91358 0.85446 0.96489 0.93322 1.42838 1.12578 1.06950 1.76563 1.19003 0.89188 0.94668 1.31881 0.92014 1.25327 0.97060 0.99767 1.02831 1.69866 1.15743 1.22271 1.55630 0.85643 0.79325 0.79526 0.78681 1.19852 1.23180 1.18303 1.22352 1.01643 0.98538 0.95691 1.22791 0.78180 1.02313 1.00762 1.48101 1.08153 1.56149 1.19557 1.18227 0.85658 0.79630 0.82515 1.90872 1.17227 1.56811 1.76862 1.19659 0.94164 0.94453 0.96243 1.23269 0.93504 1.02337 0.96948 1.23784 0.99562 0.86340 0.89589 1.66516 1.01630 1.18899 1.30563 1.19956 0.92618 0.94958 0.95696 1.44677 1.09083 1.29503 1.28304 0.67302 1.78131 1.10194 1.12235 0.98363 1.75439 1.14297 1.06168 1.17812 1.20327 0.94254 1.01262 0.99492 0.92149 0.92223 0.92644 0.90284 0.90114 0.80280 0.93598 0.91137 0.90847 0.85296 0.90348 0.78508 0.75006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 7.61 71.98 0.55 -3.06 16 2 C 0.14 4.18 3.20 44.97 0.14 4.33 16 3 H 0.07 2.03 6.64 -2.38 -0.02 2.01 16 4 C -0.13 -3.60 5.07 30.67 0.16 -3.45 16 5 C 0.17 5.62 3.10 45.02 0.14 5.76 16 6 H 0.05 1.72 8.08 -2.38 -0.02 1.70 16 7 N -0.74 -30.40 4.11 -322.82 -1.33 -31.73 16 8 C -0.22 -11.12 10.41 84.03 0.87 -10.24 16 9 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 10 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 11 N -0.98 -59.88 13.97 21.65 0.30 -59.58 16 12 Si 0.94 42.67 27.74 68.60 1.90 44.58 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 15 H -0.26 -10.72 6.52 99.48 0.65 -10.07 16 16 C -0.14 -3.84 5.78 30.67 0.18 -3.66 16 17 C 0.08 1.90 4.82 86.36 0.42 2.32 16 18 N -0.59 -15.80 2.97 -798.38 -2.37 -18.18 16 19 C 0.55 15.99 7.31 86.79 0.63 16.62 16 20 O -0.54 -19.00 12.37 -3.86 -0.05 -19.04 16 21 C -0.03 -0.69 5.56 -19.79 -0.11 -0.80 16 22 C -0.14 -2.03 7.58 22.65 0.17 -1.86 16 23 C 0.18 1.95 11.14 84.82 0.94 2.90 16 24 N -0.46 -7.41 10.35 -193.10 -2.00 -9.41 16 25 C 0.21 4.28 8.56 134.18 1.15 5.43 16 26 N -0.38 -6.43 7.06 -55.48 -0.39 -6.82 16 27 H 0.47 3.65 8.96 -219.82 -1.97 1.68 16 28 N -0.01 -0.15 13.29 37.02 0.49 0.34 16 29 N -0.26 -7.85 12.37 -51.93 -0.64 -8.49 16 30 C -0.02 -0.62 6.99 40.06 0.28 -0.34 16 31 H 0.06 1.91 6.68 -2.38 -0.02 1.89 16 32 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.05 1.74 6.81 -2.38 -0.02 1.73 16 34 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.36 14.57 3.92 -92.71 -0.36 14.21 16 37 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.13 2.19 3.44 -3.02 -0.01 2.18 16 41 H 0.08 2.06 7.74 -2.39 -0.02 2.04 16 42 H 0.20 2.14 5.45 -2.91 -0.02 2.12 16 43 H 0.23 0.24 8.06 -2.91 -0.02 0.21 16 Total: -1.00 -75.69 340.44 0.61 -75.08 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -1.30 Total: 22.07 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 5.99 Total: 11.18 kcal Atomic # 7 Polarization: -127.93 SS G_CDS: -5.94 Total: -133.87 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.90 Total: 44.58 kcal Total: -75.69 0.61 -75.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044673281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.396 kcal (2) G-P(sol) polarization free energy of solvation -75.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds