Wall clock time and date at job start Tue Mar 31 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58548 * 2 1 4 4 C 1.53197 * 109.58344 * 120.42385 * 2 1 3 5 5 C 1.53038 * 109.31228 * 174.42561 * 4 2 1 6 6 H 1.08996 * 109.46395 * 178.61511 * 5 4 2 7 7 N 1.46503 * 109.46139 * 58.65287 * 5 4 2 8 8 C 1.36932 * 119.99813 * 154.99753 * 7 5 4 9 9 H 1.07997 * 120.00281 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99810 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99591 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00070 * 0.02562 * 10 8 7 13 13 H 1.48510 * 109.46730 * 89.99941 * 12 10 8 14 14 H 1.48496 * 109.47404 * 209.99819 * 12 10 8 15 15 H 1.48499 * 109.47020 * 330.00504 * 12 10 8 16 16 C 1.53044 * 109.53596 * 298.63663 * 5 4 2 17 17 C 1.52755 * 109.38479 * 61.23988 * 16 5 4 18 18 N 1.46917 * 109.59012 * 239.71495 * 2 1 3 19 19 C 1.34779 * 120.62908 * 6.58052 * 18 2 1 20 20 O 1.21569 * 120.00119 * 3.68218 * 19 18 2 21 21 C 1.47697 * 119.99914 * 183.67919 * 19 18 2 22 22 C 1.41603 * 120.03264 * 325.64972 * 21 19 18 23 23 C 1.35779 * 119.54929 * 180.02562 * 22 21 19 24 24 C 1.40860 * 119.38811 * 0.28414 * 23 22 21 25 25 N 1.32490 * 133.41065 * 180.50346 * 24 23 22 26 26 N 1.28532 * 110.24079 * 179.47515 * 25 24 23 27 27 N 1.28984 * 110.84566 * 359.70517 * 26 25 24 28 28 N 1.36932 * 119.93446 * 359.41157 * 24 23 22 29 29 C 1.35499 * 120.84098 * 0.61650 * 28 24 23 30 30 H 1.08999 * 109.47227 * 173.29981 * 1 2 3 31 31 H 1.08993 * 109.47353 * 293.30760 * 1 2 3 32 32 H 1.09003 * 109.46825 * 53.30777 * 1 2 3 33 33 H 1.08996 * 109.49989 * 294.37663 * 4 2 1 34 34 H 1.09004 * 109.49523 * 54.44157 * 4 2 1 35 35 H 0.96996 * 119.99649 * 335.00196 * 7 5 4 36 36 H 0.97001 * 119.99435 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.49560 * 181.31520 * 16 5 4 38 38 H 1.08995 * 109.49505 * 301.41214 * 16 5 4 39 39 H 1.09007 * 109.51331 * 185.70500 * 17 16 5 40 40 H 1.09000 * 109.43693 * 65.42273 * 17 16 5 41 41 H 1.08003 * 120.22234 * 0.02562 * 22 21 19 42 42 H 1.07990 * 120.30374 * 180.02562 * 23 22 21 43 43 H 1.07998 * 119.82250 * 179.68829 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 1.2446 5 6 3.5674 -0.8494 1.1693 6 1 3.9377 -1.3473 2.0654 7 7 4.1570 0.4885 1.0757 8 6 5.4413 0.7020 1.5001 9 1 6.0197 -0.1160 1.9034 10 6 5.9997 1.9698 1.4119 11 7 7.2344 2.1748 1.8194 12 14 4.9990 3.3848 0.7150 13 1 4.2607 4.0574 1.8141 14 1 5.9086 4.3594 0.0608 15 1 4.0320 2.8625 -0.2837 16 6 3.9569 -1.6656 -0.0653 17 6 3.4645 -0.9503 -1.3220 18 7 2.0226 -0.6980 -1.1952 19 6 1.1674 -1.1043 -2.1545 20 8 -0.0151 -0.8356 -2.0681 21 6 1.6669 -1.8759 -3.3106 22 6 2.9543 -1.6101 -3.8371 23 6 3.4035 -2.3250 -4.9005 24 6 2.5773 -3.3159 -5.4660 25 7 2.7299 -4.1624 -6.4737 26 7 1.6804 -4.8929 -6.6036 27 7 0.7971 -4.5897 -5.7139 28 7 1.3388 -3.5580 -4.9344 29 6 0.8870 -2.8464 -3.8735 30 1 -0.3633 -1.0206 -0.1199 31 1 -0.3634 0.4066 0.9437 32 1 -0.3633 0.6141 -0.8241 33 1 1.7659 -0.1695 2.1367 34 1 1.6025 -1.7267 1.2895 35 1 3.6375 1.2231 0.7132 36 1 7.6244 3.0608 1.7582 37 1 5.0412 -1.7694 -0.1056 38 1 3.4983 -2.6527 -0.0083 39 1 3.6505 -1.5771 -2.1943 40 1 3.9929 -0.0031 -1.4308 41 1 3.5746 -0.8440 -3.3959 42 1 4.3834 -2.1327 -5.3116 43 1 -0.0945 -3.0476 -3.4705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044677836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:57 Heat of formation + Delta-G solvation = 172.152244 kcal Electronic energy + Delta-G solvation = -28790.480049 eV Core-core repulsion = 24876.125767 eV Total energy + Delta-G solvation = -3914.354282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.80527 -41.16072 -38.94962 -37.80480 -35.03018 -34.38014 -33.48459 -32.14268 -31.79239 -31.00857 -29.86339 -27.53413 -25.98247 -25.21059 -24.34798 -23.30959 -23.18016 -22.27971 -20.89669 -19.38043 -18.80158 -18.04823 -17.85872 -17.27853 -16.83093 -16.27104 -15.76451 -15.51800 -15.31591 -14.82706 -14.48180 -14.14809 -14.01572 -13.64294 -13.51488 -13.41181 -13.30461 -12.92324 -12.65042 -12.51192 -12.36313 -12.30264 -12.14567 -11.77731 -11.48190 -11.43678 -11.15787 -11.09917 -10.98230 -10.74116 -10.43111 -10.37057 -10.18884 -9.72656 -9.38755 -9.14371 -9.05550 -8.61288 -7.44817 -5.91508 -3.28605 -0.26625 -0.01151 1.18143 1.59338 2.25352 2.61914 2.85824 3.20898 3.22894 3.26482 3.34100 3.60273 3.91311 3.96473 4.36348 4.43622 4.43988 4.78851 4.83215 4.92947 5.00048 5.07045 5.11745 5.17311 5.24602 5.29209 5.39046 5.41529 5.48854 5.50455 5.64687 5.70969 5.78989 5.84567 5.96439 6.07251 6.18715 6.22514 6.38728 6.45177 6.51468 6.69126 7.20162 7.82777 7.83659 7.95559 8.27098 9.04361 9.76655 9.95419 11.26541 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.003493 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.260458 B = 8013.937377 C = 8809.888612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.144 3.856 3 H 0.078 0.922 4 C -0.138 4.138 5 C 0.178 3.822 6 H 0.063 0.937 7 N -0.746 5.746 8 C -0.247 4.247 9 H 0.091 0.909 10 C 0.008 3.992 11 N -0.930 5.930 12 Si 0.880 3.120 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.279 1.279 16 C -0.150 4.150 17 C 0.081 3.919 18 N -0.584 5.584 19 C 0.567 3.433 20 O -0.526 6.526 21 C -0.141 4.141 22 C -0.046 4.046 23 C -0.095 4.095 24 C 0.252 3.748 25 N -0.323 5.323 26 N -0.005 5.005 27 N -0.107 5.107 28 N -0.305 5.305 29 C 0.169 3.831 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.360 0.640 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.182 0.818 42 H 0.176 0.824 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 -7.842 -8.943 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.042 3.958 3 H 0.096 0.904 4 C -0.177 4.177 5 C 0.069 3.931 6 H 0.081 0.919 7 N -0.390 5.390 8 C -0.377 4.377 9 H 0.109 0.891 10 C -0.188 4.188 11 N -0.577 5.577 12 Si 0.711 3.289 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.205 1.205 16 C -0.191 4.191 17 C -0.041 4.041 18 N -0.316 5.316 19 C 0.353 3.647 20 O -0.404 6.404 21 C -0.150 4.150 22 C -0.072 4.072 23 C -0.118 4.118 24 C -0.002 4.002 25 N -0.183 5.183 26 N 0.002 4.998 27 N -0.090 5.090 28 N -0.083 5.083 29 C 0.039 3.961 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.194 0.806 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.199 0.801 42 H 0.193 0.807 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.913 -8.948 -9.818 17.843 hybrid contribution -0.311 1.743 0.201 1.782 sum -12.224 -7.205 -9.617 17.142 Atomic orbital electron populations 1.22232 0.92669 1.03564 1.01095 1.21372 0.95332 0.95715 0.83341 0.90440 1.22315 0.97453 1.00800 0.97089 1.20169 0.90085 0.87204 0.95681 0.91947 1.42870 1.14347 1.05146 1.76641 1.19049 0.88129 0.95951 1.34563 0.89100 1.24670 0.96021 0.97087 1.01028 1.69692 1.13437 1.22097 1.52516 0.86648 0.79594 0.83637 0.79045 1.21006 1.21667 1.20541 1.22438 1.02253 0.98076 0.96342 1.22620 0.78984 1.02378 1.00085 1.48080 1.07899 1.55913 1.19681 1.17546 0.85864 0.79712 0.81561 1.90896 1.15936 1.56791 1.76775 1.19871 0.95641 0.99336 1.00164 1.22056 0.93720 0.98760 0.92656 1.20402 1.01090 0.93939 0.96373 1.23138 0.86359 0.97807 0.92936 1.75199 1.18037 1.07779 1.17245 1.77883 0.95180 1.14470 1.12311 1.82867 1.18399 1.03369 1.04349 1.48790 1.13362 1.24385 1.21800 1.21579 1.00341 0.89538 0.84643 0.91521 0.93395 0.90769 0.90214 0.91390 0.80635 0.92931 0.89840 0.92775 0.88840 0.89153 0.80125 0.80693 0.79126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 7.61 37.16 0.28 -1.38 16 2 C 0.14 1.85 3.19 -67.60 -0.22 1.63 16 3 H 0.08 1.11 6.65 -51.93 -0.35 0.77 16 4 C -0.14 -1.76 5.07 -26.61 -0.13 -1.90 16 5 C 0.18 2.75 3.10 -67.89 -0.21 2.54 16 6 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 7 N -0.75 -14.66 4.12 -53.38 -0.22 -14.88 16 8 C -0.25 -6.11 10.41 -15.06 -0.16 -6.26 16 9 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 10 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 11 N -0.93 -27.14 13.97 55.49 0.78 -26.36 16 12 Si 0.88 20.10 27.74 -169.99 -4.71 15.38 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -5.82 6.52 56.52 0.37 -5.45 16 16 C -0.15 -1.94 5.76 -26.83 -0.15 -2.09 16 17 C 0.08 0.90 4.68 -3.93 -0.02 0.88 16 18 N -0.58 -6.79 2.98 -166.64 -0.50 -7.29 16 19 C 0.57 6.33 7.26 -12.40 -0.09 6.24 16 20 O -0.53 -6.93 12.26 5.30 0.07 -6.86 16 21 C -0.14 -1.27 5.47 -105.33 -0.58 -1.84 16 22 C -0.05 -0.34 7.43 -39.18 -0.29 -0.63 16 23 C -0.10 -0.71 10.09 -39.47 -0.40 -1.11 16 24 C 0.25 2.74 8.02 -156.27 -1.25 1.48 16 25 N -0.32 -4.24 12.26 31.10 0.38 -3.86 16 26 N -0.01 -0.07 13.35 60.35 0.81 0.73 16 27 N -0.11 -1.39 13.99 60.35 0.84 -0.55 16 28 N -0.30 -3.37 3.92 -12.06 -0.05 -3.42 16 29 C 0.17 1.54 10.76 -16.51 -0.18 1.36 16 30 H 0.07 0.82 6.80 -51.93 -0.35 0.47 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.97 6.68 -51.93 -0.35 0.63 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.36 7.05 3.93 -40.82 -0.16 6.89 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.78 3.48 -53.56 -0.19 0.60 16 40 H 0.09 1.18 7.74 -51.93 -0.40 0.78 16 41 H 0.18 1.10 5.44 -52.48 -0.29 0.82 16 42 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.19 1.45 7.93 -52.49 -0.42 1.04 16 LS Contribution 341.54 15.07 5.15 5.15 Total: -1.00 -30.97 341.54 -5.99 -36.96 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.04 Total: 5.96 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -3.49 Total: -0.96 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 2.04 Total: -55.63 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: 0.07 Total: -6.86 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.71 Total: 15.38 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.97 -5.99 -36.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044677836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.115 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds