Wall clock time and date at job start Tue Mar 31 2020 05:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.58710 * 2 1 4 4 C 1.53193 * 109.58675 * 120.43919 * 2 1 3 5 5 C 1.53038 * 109.31466 * 174.43688 * 4 2 1 6 6 H 1.08998 * 109.46203 * 58.62667 * 5 4 2 7 7 N 1.46498 * 109.46179 * 178.60012 * 5 4 2 8 8 C 1.36942 * 120.00177 * 205.02535 * 7 5 4 9 9 H 1.07997 * 119.99840 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99679 * 180.02562 * 8 7 5 11 11 N 1.31611 * 120.00597 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99515 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46935 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47371 * 240.00027 * 12 10 8 15 15 H 1.48503 * 109.46779 * 119.99770 * 12 10 8 16 16 C 1.53041 * 109.52855 * 298.61570 * 5 4 2 17 17 C 1.53200 * 109.31502 * 61.36918 * 16 5 4 18 18 N 1.46925 * 109.58721 * 239.71718 * 2 1 3 19 19 C 1.34768 * 120.63403 * 6.62253 * 18 2 1 20 20 O 1.21585 * 119.99920 * 354.11397 * 19 18 2 21 21 C 1.47693 * 120.00648 * 174.11214 * 19 18 2 22 22 C 1.41599 * 120.03089 * 324.63472 * 21 19 18 23 23 C 1.35781 * 119.54995 * 179.72896 * 22 21 19 24 24 C 1.40858 * 119.38947 * 0.59033 * 23 22 21 25 25 N 1.32491 * 133.42082 * 179.69778 * 24 23 22 26 26 N 1.28536 * 110.24160 * 179.97438 * 25 24 23 27 27 N 1.28981 * 110.84861 * 0.02562 * 26 25 24 28 28 N 1.36933 * 119.93128 * 359.65456 * 24 23 22 29 29 C 1.35499 * 120.84750 * 0.02901 * 28 24 23 30 30 H 1.08999 * 109.47354 * 176.50647 * 1 2 3 31 31 H 1.08998 * 109.46977 * 296.50842 * 1 2 3 32 32 H 1.09000 * 109.47359 * 56.50793 * 1 2 3 33 33 H 1.09000 * 109.50714 * 54.47977 * 4 2 1 34 34 H 1.08997 * 109.48506 * 294.38271 * 4 2 1 35 35 H 0.97001 * 119.99655 * 25.02869 * 7 5 4 36 36 H 0.97011 * 119.99774 * 0.02562 * 11 10 8 37 37 H 1.08999 * 109.50395 * 181.32621 * 16 5 4 38 38 H 1.09003 * 109.49532 * 301.42461 * 16 5 4 39 39 H 1.08996 * 109.58290 * 65.14949 * 17 16 5 40 40 H 1.08987 * 109.59034 * 185.43923 * 17 16 5 41 41 H 1.08001 * 120.22353 * 359.97438 * 22 21 19 42 42 H 1.07997 * 120.30665 * 180.24624 * 23 22 21 43 43 H 1.07998 * 119.83009 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7312 1.2444 5 6 3.5674 -0.8494 1.1691 6 1 4.0059 0.1461 1.0994 7 7 4.0652 -1.5186 2.3735 8 6 5.3494 -1.3015 2.7963 9 1 5.9952 -0.6365 2.2421 10 6 5.8211 -1.9360 3.9373 11 7 5.0343 -2.7467 4.6124 12 14 7.5733 -1.6404 4.5136 13 1 8.2461 -0.6946 3.5873 14 1 8.3128 -2.9280 4.5304 15 1 7.5535 -1.0629 5.8816 16 6 3.9569 -1.6656 -0.0655 17 6 3.4651 -0.9453 -1.3250 18 7 2.0225 -0.6980 -1.1953 19 6 1.1675 -1.1035 -2.1549 20 8 -0.0315 -0.9895 -1.9886 21 6 1.6868 -1.6864 -3.4087 22 6 2.8924 -1.2002 -3.9702 23 6 3.3638 -1.7470 -5.1201 24 6 2.6377 -2.7814 -5.7422 25 7 2.8286 -3.4934 -6.8431 26 7 1.8727 -4.3388 -6.9972 27 7 1.0154 -4.2422 -6.0383 28 7 1.4718 -3.2304 -5.1817 29 6 1.0016 -2.6917 -4.0308 30 1 -0.3634 -1.0257 -0.0626 31 1 -0.3633 0.4587 0.9196 32 1 -0.3634 0.5671 -0.8570 33 1 1.6031 -1.7273 1.2889 34 1 1.7657 -0.1699 2.1364 35 1 3.4850 -2.1156 2.8715 36 1 4.1247 -2.9011 4.3125 37 1 5.0412 -1.7695 -0.1058 38 1 3.4983 -2.6528 -0.0085 39 1 3.9902 0.0038 -1.4317 40 1 3.6541 -1.5679 -2.1993 41 1 3.4353 -0.4026 -3.4849 42 1 4.2841 -1.3882 -5.5569 43 1 0.0800 -3.0581 -3.6034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044677837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:02 Heat of formation + Delta-G solvation = 154.998459 kcal Electronic energy + Delta-G solvation = -28199.753764 eV Core-core repulsion = 24284.655638 eV Total energy + Delta-G solvation = -3915.098126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.85339 -41.16029 -38.96318 -37.69362 -35.14093 -34.61677 -33.54002 -32.26764 -31.88426 -31.03757 -29.27389 -27.26137 -26.01023 -25.08812 -24.24079 -23.30204 -23.16043 -22.28938 -20.81239 -19.88128 -19.10000 -18.04450 -17.43991 -17.32807 -17.02541 -16.30417 -15.68501 -15.64410 -15.42150 -14.96111 -14.42727 -14.20960 -13.86309 -13.65651 -13.60049 -13.55291 -13.39195 -13.00103 -12.87334 -12.50662 -12.38704 -12.29374 -12.10327 -11.76116 -11.64138 -11.49393 -11.06305 -10.95617 -10.70137 -10.64787 -10.48492 -10.23634 -10.12953 -9.51539 -9.29223 -9.16876 -9.02220 -8.76890 -7.17223 -6.20939 -3.22565 -0.32312 -0.06608 1.13068 1.54092 2.18067 2.52261 2.78001 3.16203 3.44255 3.50584 3.53796 3.59400 3.84146 3.89909 4.30551 4.34402 4.54674 4.69568 4.77856 4.89215 4.96350 5.02244 5.05243 5.11765 5.17309 5.21040 5.28264 5.41563 5.48558 5.52730 5.64550 5.74851 5.77621 5.87424 5.96535 6.06747 6.16050 6.20018 6.26013 6.48258 6.62691 6.78680 7.08152 7.69229 7.73776 7.90716 8.64443 9.09928 9.96487 10.10708 11.27154 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.002939 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.209718 B = 9525.050952 C =10663.661059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.149 3.851 3 H 0.078 0.922 4 C -0.138 4.138 5 C 0.184 3.816 6 H 0.050 0.950 7 N -0.735 5.735 8 C -0.335 4.335 9 H 0.066 0.934 10 C -0.043 4.043 11 N -0.942 5.942 12 Si 1.084 2.916 13 H -0.294 1.294 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.152 4.152 17 C 0.092 3.908 18 N -0.589 5.589 19 C 0.569 3.431 20 O -0.522 6.522 21 C -0.145 4.145 22 C -0.037 4.037 23 C -0.096 4.096 24 C 0.252 3.748 25 N -0.323 5.323 26 N -0.004 5.004 27 N -0.104 5.104 28 N -0.305 5.305 29 C 0.171 3.829 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.367 0.633 36 H 0.256 0.744 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.170 0.830 42 H 0.175 0.825 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.152 6.555 -17.255 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 H 0.096 0.904 4 C -0.177 4.177 5 C 0.074 3.926 6 H 0.068 0.932 7 N -0.376 5.376 8 C -0.466 4.466 9 H 0.084 0.916 10 C -0.241 4.241 11 N -0.587 5.587 12 Si 0.915 3.085 13 H -0.221 1.221 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.193 4.193 17 C -0.030 4.030 18 N -0.321 5.321 19 C 0.355 3.645 20 O -0.399 6.399 21 C -0.154 4.154 22 C -0.063 4.063 23 C -0.119 4.119 24 C -0.003 4.003 25 N -0.182 5.182 26 N 0.003 4.997 27 N -0.087 5.087 28 N -0.084 5.084 29 C 0.042 3.958 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.200 0.800 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.187 0.813 42 H 0.192 0.808 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.856 5.203 -17.218 18.917 hybrid contribution -1.073 0.627 -0.326 1.285 sum -6.929 5.830 -17.544 19.743 Atomic orbital electron populations 1.22242 0.92511 1.03829 1.00941 1.21417 0.95663 0.95123 0.83121 0.90401 1.22338 0.97634 1.01034 0.96645 1.20100 0.90690 0.95052 0.86789 0.93158 1.42446 1.13137 1.54652 1.27403 1.20067 0.89567 1.26478 1.10470 0.91612 1.25775 1.06258 0.97440 0.94630 1.70824 1.08221 1.38191 1.41471 0.83171 0.74156 0.75571 0.75613 1.22066 1.21984 1.21966 1.22702 1.02081 0.99977 0.94528 1.22386 0.79247 1.01018 1.00397 1.48088 1.07717 1.56517 1.19757 1.17573 0.86124 0.78700 0.82106 1.90919 1.14716 1.55339 1.78963 1.19867 0.97344 0.99227 0.98948 1.21744 0.92912 0.98410 0.93191 1.20354 1.01690 0.94332 0.95500 1.23129 0.87483 0.97512 0.92151 1.75198 1.19959 1.07901 1.15160 1.77894 0.96321 1.11847 1.13681 1.82892 1.19924 1.06092 0.99771 1.48806 1.17187 1.24460 1.17937 1.21631 0.99211 0.92334 0.82655 0.90990 0.93381 0.91197 0.91731 0.90374 0.79992 0.93258 0.90206 0.92213 0.90488 0.89696 0.81266 0.80772 0.79073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.59 37.15 0.28 -1.30 16 2 C 0.15 1.69 3.49 -67.60 -0.24 1.46 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.14 -1.94 4.84 -26.61 -0.13 -2.07 16 5 C 0.18 3.09 2.73 -67.89 -0.19 2.91 16 6 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 7 N -0.73 -16.68 5.12 -53.39 -0.27 -16.96 16 8 C -0.34 -8.69 9.93 -15.06 -0.15 -8.84 16 9 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 10 C -0.04 -1.19 5.50 -17.43 -0.10 -1.28 16 11 N -0.94 -27.99 13.70 55.49 0.76 -27.23 16 12 Si 1.08 24.74 29.92 -169.99 -5.09 19.65 16 13 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 C -0.15 -2.14 5.66 -26.61 -0.15 -2.30 16 17 C 0.09 0.86 4.77 -3.70 -0.02 0.84 16 18 N -0.59 -6.04 2.97 -166.38 -0.49 -6.54 16 19 C 0.57 5.86 7.29 -12.40 -0.09 5.77 16 20 O -0.52 -6.56 12.17 5.29 0.06 -6.50 16 21 C -0.14 -1.19 5.25 -105.33 -0.55 -1.74 16 22 C -0.04 -0.22 7.35 -39.18 -0.29 -0.50 16 23 C -0.10 -0.61 10.09 -39.47 -0.40 -1.01 16 24 C 0.25 2.59 8.02 -156.27 -1.25 1.34 16 25 N -0.32 -4.11 12.26 31.10 0.38 -3.73 16 26 N 0.00 -0.06 13.35 60.35 0.81 0.75 16 27 N -0.10 -1.34 13.99 60.35 0.84 -0.50 16 28 N -0.31 -3.30 3.92 -12.05 -0.05 -3.35 16 29 C 0.17 1.52 10.76 -16.51 -0.18 1.34 16 30 H 0.07 0.93 6.75 -51.93 -0.35 0.58 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.82 6.75 -51.93 -0.35 0.47 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.37 8.82 6.63 -40.82 -0.27 8.54 16 36 H 0.26 7.48 6.78 -40.82 -0.28 7.20 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.58 8.04 -51.93 -0.42 0.17 16 40 H 0.09 0.62 4.46 -51.94 -0.23 0.39 16 41 H 0.17 0.61 6.08 -52.49 -0.32 0.29 16 42 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.19 1.46 7.94 -52.49 -0.42 1.05 16 LS Contribution 348.23 15.07 5.25 5.25 Total: -1.00 -32.84 348.23 -6.46 -39.30 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.22 Total: 5.23 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -3.44 Total: -5.39 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 1.98 Total: -57.55 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: 0.06 Total: -6.50 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.09 Total: 19.65 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.84 -6.46 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044677837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.302 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds