Wall clock time and date at job start Tue Mar 31 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.58934 * 2 1 4 4 C 1.53196 * 109.58780 * 239.71981 * 2 1 3 5 5 C 1.53037 * 109.31440 * 185.43772 * 4 2 1 6 6 H 1.08999 * 109.45543 * 181.38486 * 5 4 2 7 7 N 1.46498 * 109.45769 * 301.35618 * 5 4 2 8 8 C 1.36943 * 120.00049 * 204.99934 * 7 5 4 9 9 H 1.07998 * 119.99541 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00046 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00066 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99686 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47239 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46822 * 120.00229 * 12 10 8 15 15 H 1.48501 * 109.47077 * 239.99791 * 12 10 8 16 16 C 1.53041 * 109.53864 * 61.36460 * 5 4 2 17 17 C 1.53188 * 109.31254 * 298.63432 * 16 5 4 18 18 N 1.46927 * 108.77785 * 54.63477 * 17 16 5 19 19 C 1.34773 * 120.63196 * 126.38660 * 18 17 16 20 20 O 1.21573 * 120.00255 * 186.21896 * 19 18 17 21 21 C 1.47697 * 119.99860 * 6.21955 * 19 18 17 22 22 C 1.41599 * 120.03184 * 28.60776 * 21 19 18 23 23 C 1.35779 * 119.54608 * 179.72451 * 22 21 19 24 24 C 1.40857 * 119.39189 * 0.55694 * 23 22 21 25 25 N 1.32490 * 133.41840 * 179.73787 * 24 23 22 26 26 N 1.28532 * 110.24252 * 179.97438 * 25 24 23 27 27 N 1.28983 * 110.84485 * 359.97438 * 26 25 24 28 28 N 1.36929 * 119.93224 * 359.68982 * 24 23 22 29 29 C 1.35496 * 120.84327 * 0.03343 * 28 24 23 30 30 H 1.08997 * 109.47318 * 183.16523 * 1 2 3 31 31 H 1.08999 * 109.47095 * 303.16878 * 1 2 3 32 32 H 1.09002 * 109.46917 * 63.16522 * 1 2 3 33 33 H 1.09006 * 109.49829 * 305.39052 * 4 2 1 34 34 H 1.08997 * 109.49871 * 65.45192 * 4 2 1 35 35 H 0.96998 * 120.00502 * 25.00614 * 7 5 4 36 36 H 0.96997 * 120.00028 * 179.97438 * 11 10 8 37 37 H 1.09001 * 109.49875 * 58.58737 * 16 5 4 38 38 H 1.09001 * 109.49369 * 178.68358 * 16 5 4 39 39 H 1.09002 * 109.58635 * 174.41804 * 17 16 5 40 40 H 1.09001 * 109.58917 * 294.70616 * 17 16 5 41 41 H 1.08002 * 120.22466 * 359.97438 * 22 21 19 42 42 H 1.08006 * 120.30317 * 180.23646 * 23 22 21 43 43 H 1.08005 * 119.82512 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2464 5 6 3.5678 -0.8434 -1.1730 6 1 3.9380 -1.3390 -2.0704 7 7 4.1547 0.4955 -1.0775 8 6 5.4382 0.7124 -1.5029 9 1 6.0176 -0.1035 -1.9091 10 6 5.9945 1.9809 -1.4120 11 7 5.2883 2.9753 -0.9174 12 14 7.7455 2.2765 -1.9916 13 1 8.3191 1.0056 -2.5024 14 1 7.7431 3.2897 -3.0773 15 1 8.5661 2.7696 -0.8563 16 6 3.9603 -1.6609 0.0598 17 6 3.4685 -0.9438 1.3209 18 7 2.0254 -0.6991 1.1936 19 6 1.1722 -1.1083 2.1532 20 8 -0.0273 -1.0022 1.9858 21 6 1.6944 -1.6858 3.4083 22 6 2.9651 -1.2932 3.8942 23 6 3.4332 -1.8261 5.0520 24 6 2.6504 -2.7704 5.7445 25 7 2.8283 -3.4542 6.8653 26 7 1.8119 -4.2075 7.0927 27 7 0.9248 -4.0734 6.1660 28 7 1.4270 -3.1373 5.2510 29 6 0.9541 -2.6035 4.0989 30 1 -0.3634 -1.0260 0.0567 31 1 -0.3633 0.5622 0.8602 32 1 -0.3633 0.4639 -0.9170 33 1 1.6049 -1.7246 -1.2923 34 1 1.7634 -0.1657 -2.1372 35 1 3.6343 1.2284 -0.7130 36 1 5.6771 3.8617 -0.8535 37 1 3.5036 -2.6489 0.0016 38 1 5.0449 -1.7626 0.0986 39 1 3.6575 -1.5687 2.1938 40 1 3.9938 0.0051 1.4301 41 1 3.5563 -0.5717 3.3496 42 1 4.3991 -1.5325 5.4358 43 1 -0.0133 -2.9044 3.7248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044677838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:04 Heat of formation + Delta-G solvation = 164.107259 kcal Electronic energy + Delta-G solvation = -28665.938261 eV Core-core repulsion = 24751.235122 eV Total energy + Delta-G solvation = -3914.703139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -43.74037 -41.02068 -38.84252 -37.63802 -34.90767 -34.24917 -33.37389 -32.09869 -31.68411 -30.91331 -29.26670 -27.32251 -25.87622 -25.06252 -24.22079 -23.61530 -23.13372 -22.14577 -20.80075 -19.29560 -18.71258 -17.90801 -17.36351 -17.21624 -16.70529 -16.10338 -15.56864 -15.45276 -15.24842 -14.76695 -14.22321 -14.14988 -13.91834 -13.55071 -13.40543 -13.39683 -13.15923 -12.88675 -12.61460 -12.27795 -12.25457 -12.12403 -12.04827 -11.54297 -11.39383 -11.36623 -11.03237 -10.93777 -10.84201 -10.67822 -10.38492 -10.24554 -10.08096 -9.78300 -9.26679 -9.09599 -9.00748 -8.45130 -7.13438 -5.92209 -3.21857 -0.20582 0.07041 1.25354 1.65128 2.34165 2.76890 2.97443 3.30155 3.32820 3.39761 3.41640 3.68383 4.00481 4.07955 4.43528 4.46205 4.51882 4.88887 4.93573 5.10779 5.15550 5.18670 5.23655 5.31566 5.36151 5.42382 5.51870 5.55226 5.59669 5.70275 5.78876 5.85439 5.90900 5.99595 6.13453 6.19770 6.31029 6.35880 6.56214 6.58363 6.66532 6.82051 7.34502 7.57451 7.95364 8.01306 8.26088 9.38146 9.92742 10.27548 11.29966 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.003353 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.931431 B = 8347.663534 C = 9562.615383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.146 3.854 3 H 0.087 0.913 4 C -0.134 4.134 5 C 0.172 3.828 6 H 0.053 0.947 7 N -0.722 5.722 8 C -0.242 4.242 9 H 0.071 0.929 10 C -0.010 4.010 11 N -0.931 5.931 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.292 1.292 15 H -0.291 1.291 16 C -0.150 4.150 17 C 0.091 3.909 18 N -0.582 5.582 19 C 0.566 3.434 20 O -0.528 6.528 21 C -0.142 4.142 22 C -0.041 4.041 23 C -0.098 4.098 24 C 0.253 3.747 25 N -0.325 5.325 26 N -0.006 5.006 27 N -0.108 5.108 28 N -0.305 5.305 29 C 0.169 3.831 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.383 0.617 36 H 0.256 0.744 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.180 0.820 42 H 0.175 0.825 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.686 -8.817 6.810 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.044 3.956 3 H 0.104 0.896 4 C -0.173 4.173 5 C 0.062 3.938 6 H 0.071 0.929 7 N -0.365 5.365 8 C -0.373 4.373 9 H 0.089 0.911 10 C -0.206 4.206 11 N -0.579 5.579 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.191 4.191 17 C -0.031 4.031 18 N -0.313 5.313 19 C 0.352 3.648 20 O -0.407 6.407 21 C -0.151 4.151 22 C -0.067 4.067 23 C -0.121 4.121 24 C -0.002 4.002 25 N -0.184 5.184 26 N 0.001 4.999 27 N -0.091 5.091 28 N -0.084 5.084 29 C 0.039 3.961 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.197 0.803 42 H 0.192 0.808 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.551 -9.849 7.833 14.676 hybrid contribution 1.082 1.006 -0.927 1.744 sum -6.469 -8.843 6.906 12.951 Atomic orbital electron populations 1.22233 0.92892 1.03335 1.00935 1.21383 0.95048 0.96048 0.83086 0.89562 1.22264 0.97389 1.00391 0.97267 1.20201 0.90411 0.88153 0.95031 0.92910 1.42521 1.13928 1.04603 1.75426 1.19262 0.89730 0.94208 1.34080 0.91108 1.24719 0.98291 0.95872 1.01734 1.69647 1.36454 1.00677 1.51140 0.86169 0.84574 0.77719 0.77986 1.20579 1.21904 1.21854 1.22539 1.01722 0.98012 0.96825 1.22507 0.79081 1.02241 0.99251 1.48039 1.07787 1.55746 1.19774 1.17551 0.86152 0.78908 0.82159 1.90892 1.14693 1.55964 1.79123 1.19932 0.96089 1.00268 0.98775 1.22107 0.93413 0.97695 0.93495 1.20400 1.01541 0.95783 0.94401 1.23142 0.86501 0.97705 0.92822 1.75190 1.18988 1.10741 1.13517 1.77872 0.95446 1.11628 1.14988 1.82857 1.18982 1.09198 0.98089 1.48786 1.14301 1.27633 1.17649 1.21631 1.00047 0.92197 0.82239 0.91292 0.91269 0.93570 0.91914 0.90430 0.78164 0.93457 0.93107 0.90400 0.89833 0.88704 0.80288 0.80775 0.79060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 7.60 37.16 0.28 -1.51 16 2 C 0.15 2.02 3.19 -67.60 -0.22 1.80 16 3 H 0.09 1.37 6.64 -51.93 -0.34 1.02 16 4 C -0.13 -1.87 5.07 -26.61 -0.13 -2.01 16 5 C 0.17 2.80 3.10 -67.89 -0.21 2.59 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 N -0.72 -15.05 4.31 -53.39 -0.23 -15.28 16 8 C -0.24 -5.85 9.93 -15.06 -0.15 -6.00 16 9 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 10 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 11 N -0.93 -25.40 13.06 55.49 0.72 -24.67 16 12 Si 0.90 20.56 29.55 -169.99 -5.02 15.54 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 C -0.15 -2.03 5.78 -26.61 -0.15 -2.19 16 17 C 0.09 1.09 4.43 -3.71 -0.02 1.07 16 18 N -0.58 -7.22 2.97 -166.38 -0.49 -7.72 16 19 C 0.57 6.77 7.37 -12.40 -0.09 6.68 16 20 O -0.53 -7.35 12.04 5.30 0.06 -7.29 16 21 C -0.14 -1.38 5.44 -105.33 -0.57 -1.95 16 22 C -0.04 -0.34 7.41 -39.18 -0.29 -0.63 16 23 C -0.10 -0.81 10.09 -39.47 -0.40 -1.20 16 24 C 0.25 2.89 8.02 -156.27 -1.25 1.63 16 25 N -0.33 -4.42 12.26 31.10 0.38 -4.04 16 26 N -0.01 -0.09 13.35 60.35 0.81 0.72 16 27 N -0.11 -1.46 13.99 60.35 0.84 -0.62 16 28 N -0.31 -3.55 3.92 -12.06 -0.05 -3.60 16 29 C 0.17 1.65 10.75 -16.51 -0.18 1.47 16 30 H 0.07 0.93 6.76 -51.93 -0.35 0.58 16 31 H 0.07 0.97 6.75 -51.93 -0.35 0.62 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.38 8.54 6.06 -40.82 -0.25 8.30 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 0.77 4.06 -51.93 -0.21 0.56 16 40 H 0.09 1.34 7.59 -51.93 -0.39 0.94 16 41 H 0.18 1.30 5.35 -52.49 -0.28 1.02 16 42 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.19 1.60 7.84 -52.48 -0.41 1.18 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -29.36 344.49 -6.36 -35.72 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.09 Total: 6.64 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -3.48 Total: -0.60 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 1.98 Total: -55.20 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.06 Total: -7.29 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.36 -6.36 -35.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044677838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.827 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds