Wall clock time and date at job start Tue Mar 31 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70287 * 2 1 4 4 C 1.53198 * 109.58572 * 239.64505 * 2 1 3 5 5 C 1.53049 * 109.30962 * 185.57564 * 4 2 1 6 6 H 1.08995 * 109.46051 * 301.35933 * 5 4 2 7 7 N 1.46500 * 109.45421 * 181.38381 * 5 4 2 8 8 C 1.36941 * 119.99271 * 155.00173 * 7 5 4 9 9 H 1.07999 * 120.00676 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99554 * 180.02562 * 8 7 5 11 11 N 1.31613 * 120.00276 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99947 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47049 * 59.99808 * 12 10 8 14 14 H 1.48501 * 109.47112 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47315 * 299.99723 * 12 10 8 16 16 C 1.53041 * 109.53727 * 61.36851 * 5 4 2 17 17 C 1.53624 * 109.24004 * 298.50739 * 16 5 4 18 18 N 1.46921 * 109.59020 * 120.35507 * 2 1 3 19 19 C 1.34783 * 120.63055 * 353.37381 * 18 2 1 20 20 O 1.21573 * 119.99632 * 5.76706 * 19 18 2 21 21 C 1.47691 * 119.99973 * 185.76364 * 19 18 2 22 22 C 1.41589 * 120.03377 * 38.04713 * 21 19 18 23 23 C 1.35784 * 119.55127 * 179.97438 * 22 21 19 24 24 C 1.40860 * 119.38999 * 359.97438 * 23 22 21 25 25 N 1.32484 * 133.41955 * 179.68541 * 24 23 22 26 26 N 1.28534 * 110.24479 * 179.88090 * 25 24 23 27 27 N 1.28989 * 110.84098 * 0.42714 * 26 25 24 28 28 N 1.36930 * 119.93168 * 0.02562 * 24 23 22 29 29 C 1.35502 * 120.84427 * 359.97438 * 28 24 23 30 30 H 1.08999 * 109.46841 * 303.46434 * 1 2 3 31 31 H 1.08996 * 109.47139 * 63.46329 * 1 2 3 32 32 H 1.09005 * 109.46839 * 183.46274 * 1 2 3 33 33 H 1.08997 * 109.49911 * 305.52582 * 4 2 1 34 34 H 1.08996 * 109.49757 * 65.59645 * 4 2 1 35 35 H 0.96999 * 120.00308 * 335.00531 * 7 5 4 36 36 H 0.97000 * 120.00628 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.49736 * 58.58330 * 16 5 4 38 38 H 1.08993 * 109.49521 * 178.67996 * 16 5 4 39 39 H 1.09004 * 109.73932 * 295.12081 * 17 16 5 40 40 H 1.09002 * 109.66394 * 174.55147 * 17 16 5 41 41 H 1.08001 * 120.22429 * 359.94425 * 22 21 19 42 42 H 1.08003 * 120.30678 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.82717 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2455 5 6 3.5675 -0.8479 -1.1702 6 1 4.0061 0.1474 -1.0991 7 7 4.0652 -1.5157 -2.3754 8 6 5.3497 -1.2986 -2.7975 9 1 5.9958 -0.6349 -2.2421 10 6 5.8211 -1.9310 -3.9398 11 7 5.0337 -2.7395 -4.6169 12 14 7.5735 -1.6355 -4.5151 13 1 8.5213 -2.0594 -3.4533 14 1 7.8288 -2.4220 -5.7487 15 1 7.7639 -0.1907 -4.8005 16 6 3.9570 -1.6657 0.0634 17 6 3.4657 -0.9420 1.3263 18 7 2.0226 -0.6995 1.1944 19 6 1.1675 -1.1062 2.1536 20 8 -0.0313 -0.9898 1.9883 21 6 1.6869 -1.6931 3.4054 22 6 2.8629 -1.1726 3.9977 23 6 3.3315 -1.7194 5.1488 24 6 2.6380 -2.7963 5.7350 25 7 2.8406 -3.5262 6.8219 26 7 1.9154 -4.4102 6.9428 27 7 1.0735 -4.3295 5.9688 28 7 1.5029 -3.2815 5.1425 29 6 1.0324 -2.7384 3.9937 30 1 -0.3633 0.5667 0.8573 31 1 -0.3633 0.4591 -0.9194 32 1 -0.3633 -1.0258 0.0621 33 1 1.6030 -1.7253 -1.2914 34 1 1.7655 -0.1671 -2.1369 35 1 3.4848 -2.1116 -2.8745 36 1 5.3632 -3.1816 -5.4149 37 1 3.4984 -2.6528 0.0051 38 1 5.0412 -1.7696 0.1036 39 1 3.9878 0.0090 1.4323 40 1 3.6533 -1.5637 2.2018 41 1 3.3840 -0.3465 3.5366 42 1 4.2276 -1.3321 5.6108 43 1 0.1357 -3.1344 3.5402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044677839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:10 Heat of formation + Delta-G solvation = 152.972389 kcal Electronic energy + Delta-G solvation = -28154.570767 eV Core-core repulsion = 24239.384783 eV Total energy + Delta-G solvation = -3915.185983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.82384 -41.09396 -38.92081 -37.60132 -34.97734 -34.49490 -33.47224 -32.09652 -31.84487 -31.00008 -29.44059 -27.27734 -25.97315 -25.03005 -24.41015 -23.27514 -23.08255 -22.24512 -20.66199 -19.80109 -19.04543 -18.00935 -17.34694 -17.23760 -16.97877 -16.23161 -15.61008 -15.52131 -15.37721 -14.95937 -14.20972 -14.18326 -13.81111 -13.69468 -13.49462 -13.45863 -13.25365 -12.92514 -12.71331 -12.48550 -12.31696 -12.26694 -12.01995 -11.73487 -11.56778 -11.46723 -11.00346 -10.97601 -10.94767 -10.66369 -10.46649 -10.36306 -10.00314 -9.83079 -9.41850 -9.13875 -9.01022 -8.71979 -7.09779 -5.87454 -3.17623 -0.28430 -0.03418 1.16186 1.57768 2.21523 2.56643 2.81032 3.19199 3.35749 3.40532 3.42182 3.57207 3.88060 3.93864 4.33503 4.38580 4.47549 4.75752 4.81571 4.96408 5.02896 5.08217 5.10370 5.16288 5.20851 5.28110 5.33478 5.44702 5.48133 5.60112 5.70845 5.78967 5.84371 5.95826 6.09022 6.14312 6.26630 6.28914 6.37222 6.55167 6.71510 6.87579 7.13945 7.57549 7.78915 7.93494 8.30316 9.41767 9.97971 10.32094 11.34746 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.002939 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.492680 B = 9523.444103 C =10658.581394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.148 3.852 3 H 0.078 0.922 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.723 5.723 8 C -0.245 4.245 9 H 0.070 0.930 10 C -0.010 4.010 11 N -0.931 5.931 12 Si 0.907 3.093 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.285 1.285 16 C -0.152 4.152 17 C 0.093 3.907 18 N -0.588 5.588 19 C 0.569 3.431 20 O -0.521 6.521 21 C -0.143 4.143 22 C -0.035 4.035 23 C -0.096 4.096 24 C 0.251 3.749 25 N -0.324 5.324 26 N -0.005 5.005 27 N -0.104 5.104 28 N -0.305 5.305 29 C 0.170 3.830 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.384 0.616 36 H 0.257 0.743 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.169 0.831 42 H 0.175 0.825 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 6.285 16.869 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 H 0.095 0.905 4 C -0.175 4.175 5 C 0.068 3.932 6 H 0.067 0.933 7 N -0.363 5.363 8 C -0.376 4.376 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.193 4.193 17 C -0.029 4.029 18 N -0.320 5.320 19 C 0.354 3.646 20 O -0.399 6.399 21 C -0.152 4.152 22 C -0.061 4.061 23 C -0.119 4.119 24 C -0.003 4.003 25 N -0.183 5.183 26 N 0.002 4.998 27 N -0.087 5.087 28 N -0.083 5.083 29 C 0.040 3.960 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.218 0.782 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.186 0.814 42 H 0.192 0.808 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.202 5.169 17.806 19.891 hybrid contribution 1.019 0.331 -1.255 1.650 sum -6.184 5.500 16.551 18.505 Atomic orbital electron populations 1.22237 0.92581 1.03806 1.00884 1.21435 0.95605 0.95112 0.83240 0.90456 1.22327 0.97622 1.01122 0.96466 1.20166 0.90853 0.95026 0.87132 0.93296 1.42416 1.12951 1.54378 1.26575 1.19163 0.89091 1.22613 1.06710 0.91175 1.24758 0.98174 0.99665 0.98103 1.69642 1.35520 1.33260 1.19439 0.86288 0.84482 0.77517 0.77985 1.21221 1.21677 1.21200 1.22800 1.01996 1.00076 0.94429 1.22427 0.79171 1.00969 1.00374 1.48110 1.07715 1.56446 1.19761 1.17578 0.86142 0.78782 0.82071 1.90917 1.14736 1.55416 1.78850 1.19881 0.97774 0.98501 0.99076 1.21684 0.92730 0.98708 0.92937 1.20349 1.01874 0.93745 0.95919 1.23120 0.87960 0.97367 0.91867 1.75189 1.20359 1.06606 1.16119 1.77895 0.96755 1.12133 1.13013 1.82889 1.20521 1.04701 1.00598 1.48799 1.18717 1.22758 1.18058 1.21627 0.98869 0.92515 0.82977 0.91293 0.93378 0.90991 0.91618 0.90287 0.78208 0.93335 0.92047 0.90312 0.90526 0.89959 0.81399 0.80809 0.79117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.59 37.16 0.28 -1.30 16 2 C 0.15 1.68 3.49 -67.60 -0.24 1.44 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.14 -1.92 4.84 -26.60 -0.13 -2.05 16 5 C 0.18 2.97 2.73 -67.88 -0.19 2.78 16 6 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 7 N -0.72 -16.40 5.12 -53.38 -0.27 -16.67 16 8 C -0.24 -6.26 9.93 -15.06 -0.15 -6.40 16 9 H 0.07 1.72 7.83 -52.49 -0.41 1.30 16 10 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 11 N -0.93 -26.90 13.06 55.49 0.72 -26.18 16 12 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 15 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 16 C -0.15 -2.12 5.67 -26.39 -0.15 -2.27 16 17 C 0.09 0.86 4.86 -3.48 -0.02 0.85 16 18 N -0.59 -6.02 2.97 -166.11 -0.49 -6.51 16 19 C 0.57 5.85 7.26 -12.40 -0.09 5.76 16 20 O -0.52 -6.59 12.23 5.30 0.06 -6.52 16 21 C -0.14 -1.18 5.16 -105.34 -0.54 -1.72 16 22 C -0.03 -0.20 7.36 -39.18 -0.29 -0.49 16 23 C -0.10 -0.61 10.09 -39.47 -0.40 -1.01 16 24 C 0.25 2.60 8.02 -156.28 -1.25 1.34 16 25 N -0.32 -4.13 12.26 31.10 0.38 -3.75 16 26 N 0.00 -0.07 13.35 60.35 0.81 0.74 16 27 N -0.10 -1.35 13.99 60.35 0.84 -0.51 16 28 N -0.30 -3.31 3.92 -12.06 -0.05 -3.36 16 29 C 0.17 1.51 10.77 -16.51 -0.18 1.34 16 30 H 0.07 0.81 6.75 -51.93 -0.35 0.46 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.93 6.75 -51.93 -0.35 0.58 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.38 9.51 7.80 -40.82 -0.32 9.20 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.08 0.60 4.58 -51.93 -0.24 0.37 16 41 H 0.17 0.58 6.35 -52.49 -0.33 0.25 16 42 H 0.17 0.60 8.06 -52.48 -0.42 0.18 16 43 H 0.19 1.47 7.99 -52.49 -0.42 1.05 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -31.84 350.47 -6.52 -38.36 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.35 Total: 5.03 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -3.43 Total: -2.12 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 1.94 Total: -56.24 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: 0.06 Total: -6.52 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.84 -6.52 -38.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044677839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.331 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds