Wall clock time and date at job start Tue Mar 31 2020 05:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70287 * 2 1 4 4 C 1.53198 * 109.58572 * 239.64505 * 2 1 3 5 5 C 1.53049 * 109.30962 * 185.57564 * 4 2 1 6 6 H 1.08995 * 109.46051 * 301.35933 * 5 4 2 7 7 N 1.46500 * 109.45421 * 181.38381 * 5 4 2 8 8 C 1.36941 * 119.99271 * 155.00173 * 7 5 4 9 9 H 1.07999 * 120.00676 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99554 * 180.02562 * 8 7 5 11 11 N 1.31613 * 120.00276 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99947 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47049 * 59.99808 * 12 10 8 14 14 H 1.48501 * 109.47112 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47315 * 299.99723 * 12 10 8 16 16 C 1.53041 * 109.53727 * 61.36851 * 5 4 2 17 17 C 1.53624 * 109.24004 * 298.50739 * 16 5 4 18 18 N 1.46921 * 109.59020 * 120.35507 * 2 1 3 19 19 C 1.34783 * 120.63055 * 353.37381 * 18 2 1 20 20 O 1.21573 * 119.99632 * 5.76706 * 19 18 2 21 21 C 1.47691 * 119.99973 * 185.76364 * 19 18 2 22 22 C 1.41589 * 120.03377 * 38.04713 * 21 19 18 23 23 C 1.35784 * 119.55127 * 179.97438 * 22 21 19 24 24 C 1.40860 * 119.38999 * 359.97438 * 23 22 21 25 25 N 1.32484 * 133.41955 * 179.68541 * 24 23 22 26 26 N 1.28534 * 110.24479 * 179.88090 * 25 24 23 27 27 N 1.28989 * 110.84098 * 0.42714 * 26 25 24 28 28 N 1.36930 * 119.93168 * 0.02562 * 24 23 22 29 29 C 1.35502 * 120.84427 * 359.97438 * 28 24 23 30 30 H 1.08999 * 109.46841 * 303.46434 * 1 2 3 31 31 H 1.08996 * 109.47139 * 63.46329 * 1 2 3 32 32 H 1.09005 * 109.46839 * 183.46274 * 1 2 3 33 33 H 1.08997 * 109.49911 * 305.52582 * 4 2 1 34 34 H 1.08996 * 109.49757 * 65.59645 * 4 2 1 35 35 H 0.96999 * 120.00308 * 335.00531 * 7 5 4 36 36 H 0.97000 * 120.00628 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.49736 * 58.58330 * 16 5 4 38 38 H 1.08993 * 109.49521 * 178.67996 * 16 5 4 39 39 H 1.09004 * 109.73932 * 295.12081 * 17 16 5 40 40 H 1.09002 * 109.66394 * 174.55147 * 17 16 5 41 41 H 1.08001 * 120.22429 * 359.94425 * 22 21 19 42 42 H 1.08003 * 120.30678 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.82717 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2455 5 6 3.5675 -0.8479 -1.1702 6 1 4.0061 0.1474 -1.0991 7 7 4.0652 -1.5157 -2.3754 8 6 5.3497 -1.2986 -2.7975 9 1 5.9958 -0.6349 -2.2421 10 6 5.8211 -1.9310 -3.9398 11 7 5.0337 -2.7395 -4.6169 12 14 7.5735 -1.6355 -4.5151 13 1 8.5213 -2.0594 -3.4533 14 1 7.8288 -2.4220 -5.7487 15 1 7.7639 -0.1907 -4.8005 16 6 3.9570 -1.6657 0.0634 17 6 3.4657 -0.9420 1.3263 18 7 2.0226 -0.6995 1.1944 19 6 1.1675 -1.1062 2.1536 20 8 -0.0313 -0.9898 1.9883 21 6 1.6869 -1.6931 3.4054 22 6 2.8629 -1.1726 3.9977 23 6 3.3315 -1.7194 5.1488 24 6 2.6380 -2.7963 5.7350 25 7 2.8406 -3.5262 6.8219 26 7 1.9154 -4.4102 6.9428 27 7 1.0735 -4.3295 5.9688 28 7 1.5029 -3.2815 5.1425 29 6 1.0324 -2.7384 3.9937 30 1 -0.3633 0.5667 0.8573 31 1 -0.3633 0.4591 -0.9194 32 1 -0.3633 -1.0258 0.0621 33 1 1.6030 -1.7253 -1.2914 34 1 1.7655 -0.1671 -2.1369 35 1 3.4848 -2.1116 -2.8745 36 1 5.3632 -3.1816 -5.4149 37 1 3.4984 -2.6528 0.0051 38 1 5.0412 -1.7696 0.1036 39 1 3.9878 0.0090 1.4323 40 1 3.6533 -1.5637 2.2018 41 1 3.3840 -0.3465 3.5366 42 1 4.2276 -1.3321 5.6108 43 1 0.1357 -3.1344 3.5402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044677839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:09 Heat of formation + Delta-G solvation = 131.702188 kcal Electronic energy + Delta-G solvation = -28155.493112 eV Core-core repulsion = 24239.384783 eV Total energy + Delta-G solvation = -3916.108328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.63238 -41.95569 -39.74122 -38.65898 -36.26473 -35.43701 -34.36582 -33.68889 -32.71165 -31.75670 -30.95740 -28.41355 -26.79333 -25.96612 -25.71647 -24.41907 -24.04363 -23.16805 -21.78271 -20.83412 -19.87845 -19.09325 -18.71339 -18.13188 -17.80438 -17.13243 -16.69270 -16.45825 -16.34499 -16.00563 -15.47362 -15.46186 -14.98167 -14.71889 -14.59378 -14.35884 -14.32684 -13.86168 -13.77733 -13.49897 -13.26548 -13.07411 -12.96967 -12.89634 -12.78804 -12.59089 -12.50163 -12.33564 -12.20641 -11.98450 -11.92094 -11.68292 -11.36671 -11.22975 -10.82345 -10.32327 -9.86532 -9.62559 -8.96942 -7.90345 -5.18492 -1.02179 -0.66645 0.40460 0.72771 1.44573 1.51057 1.52770 1.58665 1.76074 2.08690 2.48478 2.59542 2.86436 3.17224 3.32236 3.43803 3.64630 3.74029 3.78551 3.91562 4.01213 4.05972 4.12915 4.28222 4.38550 4.40966 4.56858 4.61385 4.65273 4.67349 4.74491 4.79754 4.88008 4.96201 5.04322 5.08251 5.12266 5.20570 5.30285 5.48334 5.54854 5.59257 5.70919 6.29332 6.31856 6.95402 7.06879 7.37622 8.15131 8.35855 9.33230 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.002939 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.492680 B = 9523.444103 C =10658.581394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.156 3.844 3 H 0.102 0.898 4 C -0.127 4.127 5 C 0.171 3.829 6 H 0.057 0.943 7 N -0.740 5.740 8 C -0.231 4.231 9 H 0.084 0.916 10 C -0.080 4.080 11 N -0.974 5.974 12 Si 0.968 3.032 13 H -0.276 1.276 14 H -0.304 1.304 15 H -0.277 1.277 16 C -0.144 4.144 17 C 0.101 3.899 18 N -0.588 5.588 19 C 0.572 3.428 20 O -0.546 6.546 21 C -0.133 4.133 22 C -0.020 4.020 23 C -0.080 4.080 24 C 0.240 3.760 25 N -0.345 5.345 26 N -0.026 5.026 27 N -0.131 5.131 28 N -0.307 5.307 29 C 0.157 3.843 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.368 0.632 36 H 0.248 0.752 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.207 0.793 42 H 0.212 0.788 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.902 9.014 18.392 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.120 0.880 4 C -0.166 4.166 5 C 0.063 3.937 6 H 0.075 0.925 7 N -0.379 5.379 8 C -0.363 4.363 9 H 0.102 0.898 10 C -0.272 4.272 11 N -0.625 5.625 12 Si 0.797 3.203 13 H -0.202 1.202 14 H -0.231 1.231 15 H -0.203 1.203 16 C -0.185 4.185 17 C -0.021 4.021 18 N -0.319 5.319 19 C 0.359 3.641 20 O -0.425 6.425 21 C -0.142 4.142 22 C -0.046 4.046 23 C -0.102 4.102 24 C -0.013 4.013 25 N -0.206 5.206 26 N -0.019 5.019 27 N -0.115 5.115 28 N -0.085 5.085 29 C 0.027 3.973 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.199 0.801 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.224 0.776 42 H 0.229 0.771 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.687 7.934 19.395 21.713 hybrid contribution 0.478 -0.426 -1.753 1.866 sum -5.210 7.509 17.642 19.869 Atomic orbital electron populations 1.22121 0.92724 1.02594 1.01239 1.21343 0.95359 0.95779 0.82170 0.88042 1.22191 0.95909 1.00472 0.98020 1.20480 0.92187 0.95073 0.85934 0.92452 1.42701 1.12054 1.54580 1.28547 1.19620 0.90128 1.20781 1.05754 0.89842 1.25529 1.01791 1.00689 0.99148 1.69811 1.37232 1.35405 1.20053 0.85291 0.80567 0.77400 0.76996 1.20246 1.23112 1.20287 1.22567 1.01316 0.99082 0.95556 1.22528 0.78407 1.02685 0.98475 1.48099 1.08208 1.56258 1.19359 1.17725 0.85725 0.78180 0.82492 1.90926 1.15940 1.56175 1.79430 1.19782 0.98433 0.97895 0.98045 1.22061 0.91375 0.98849 0.92326 1.20865 1.02202 0.91706 0.95453 1.23712 0.88084 0.98031 0.91471 1.75072 1.20717 1.07196 1.17592 1.77850 0.97369 1.13017 1.13700 1.82802 1.21207 1.06194 1.01248 1.48754 1.18997 1.22450 1.18260 1.21777 0.99514 0.93210 0.82787 0.91159 0.92785 0.92983 0.93473 0.91160 0.80060 0.94350 0.94227 0.91249 0.86855 0.87339 0.77631 0.77111 0.78829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 7.59 71.98 0.55 -2.20 16 2 C 0.16 3.09 3.49 44.98 0.16 3.25 16 3 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.13 -3.44 4.84 30.68 0.15 -3.29 16 5 C 0.17 5.40 2.73 45.02 0.12 5.52 16 6 H 0.06 1.74 8.08 -2.39 -0.02 1.72 16 7 N -0.74 -33.51 5.12 -322.80 -1.65 -35.16 16 8 C -0.23 -11.64 9.93 84.03 0.83 -10.80 16 9 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 10 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 11 N -0.97 -57.73 13.06 21.65 0.28 -57.45 16 12 Si 0.97 43.65 29.55 68.60 2.03 45.68 16 13 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 15 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 16 C -0.14 -3.68 5.67 30.82 0.17 -3.51 16 17 C 0.10 1.37 4.86 86.51 0.42 1.80 16 18 N -0.59 -9.87 2.97 -797.72 -2.37 -12.23 16 19 C 0.57 10.05 7.26 86.74 0.63 10.68 16 20 O -0.55 -12.79 12.23 -3.95 -0.05 -12.84 16 21 C -0.13 -1.73 5.16 -20.33 -0.10 -1.84 16 22 C -0.02 -0.13 7.36 22.53 0.17 0.03 16 23 C -0.08 -0.66 10.09 22.34 0.23 -0.43 16 24 C 0.24 4.46 8.02 134.16 1.08 5.54 16 25 N -0.35 -8.56 12.26 -55.52 -0.68 -9.24 16 26 N -0.03 -0.74 13.35 37.02 0.49 -0.24 16 27 N -0.13 -3.47 13.99 37.02 0.52 -2.95 16 28 N -0.31 -6.36 3.92 -192.06 -0.75 -7.12 16 29 C 0.16 2.56 10.77 83.75 0.90 3.47 16 30 H 0.07 1.50 6.75 -2.39 -0.02 1.49 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.32 6.75 -2.38 -0.02 1.30 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.37 18.74 7.80 -92.71 -0.72 18.02 16 36 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.11 0.88 8.08 -2.39 -0.02 0.86 16 40 H 0.11 0.97 4.58 -2.39 -0.01 0.96 16 41 H 0.21 -0.13 6.35 -2.91 -0.02 -0.15 16 42 H 0.21 0.20 8.06 -2.91 -0.02 0.17 16 43 H 0.19 2.92 7.99 -2.91 -0.02 2.89 16 Total: -1.00 -73.12 350.47 3.93 -69.19 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.34 Total: 18.02 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.76 Total: 4.34 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -4.16 Total: -124.39 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.05 Total: -12.84 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -73.12 3.93 -69.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044677839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.895 kcal (2) G-P(sol) polarization free energy of solvation -73.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds