Wall clock time and date at job start Tue Mar 31 2020 05:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.58322 * 2 1 4 4 C 1.53184 * 109.58784 * 120.42830 * 2 1 3 5 5 C 1.53046 * 109.31445 * 174.42183 * 4 2 1 6 6 H 1.08997 * 109.46527 * 178.61433 * 5 4 2 7 7 N 1.46507 * 109.45573 * 58.65697 * 5 4 2 8 8 C 1.36935 * 119.99481 * 155.00318 * 7 5 4 9 9 H 1.07999 * 120.00557 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99519 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00107 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00057 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47558 * 89.99977 * 12 10 8 14 14 H 1.48507 * 109.46721 * 209.99854 * 12 10 8 15 15 H 1.48501 * 109.47101 * 329.99287 * 12 10 8 16 16 C 1.53041 * 109.53745 * 298.64067 * 5 4 2 17 17 C 1.52761 * 109.38539 * 61.23582 * 16 5 4 18 18 N 1.46921 * 109.58662 * 239.72248 * 2 1 3 19 19 C 1.34776 * 120.63301 * 6.57713 * 18 2 1 20 20 O 1.21555 * 119.99763 * 3.44380 * 19 18 2 21 21 C 1.47824 * 120.00246 * 183.44786 * 19 18 2 22 22 C 1.41574 * 120.37158 * 326.16258 * 21 19 18 23 23 C 1.34817 * 120.11534 * 180.26366 * 22 21 19 24 24 N 1.36064 * 120.82633 * 359.48323 * 23 22 21 25 25 N 1.40246 * 133.73595 * 180.23647 * 24 23 22 26 26 N 1.28968 * 107.02502 * 180.02562 * 25 24 23 27 27 N 1.28543 * 110.84223 * 0.02562 * 26 25 24 28 28 C 1.32619 * 110.18498 * 359.97438 * 27 26 25 29 29 C 1.38454 * 120.37271 * 145.92756 * 21 19 18 30 30 H 1.09003 * 109.47052 * 173.34990 * 1 2 3 31 31 H 1.08998 * 109.47030 * 293.34663 * 1 2 3 32 32 H 1.08998 * 109.47319 * 53.34868 * 1 2 3 33 33 H 1.09004 * 109.50383 * 294.37471 * 4 2 1 34 34 H 1.08998 * 109.50003 * 54.44134 * 4 2 1 35 35 H 0.96999 * 120.00021 * 335.00199 * 7 5 4 36 36 H 0.96999 * 120.00236 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.49414 * 181.31646 * 16 5 4 38 38 H 1.09004 * 109.49172 * 301.40697 * 16 5 4 39 39 H 1.08999 * 109.50591 * 185.70812 * 17 16 5 40 40 H 1.08998 * 109.43079 * 65.42612 * 17 16 5 41 41 H 1.08001 * 119.94658 * 0.02562 * 22 21 19 42 42 H 1.07999 * 119.59301 * 179.75921 * 23 22 21 43 43 H 1.07997 * 120.52303 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7309 1.2444 5 6 3.5675 -0.8494 1.1690 6 1 3.9379 -1.3474 2.0650 7 7 4.1570 0.4886 1.0755 8 6 5.4414 0.7019 1.4998 9 1 6.0196 -0.1159 1.9037 10 6 6.0001 1.9695 1.4108 11 7 7.2344 2.1749 1.8190 12 14 4.9997 3.3843 0.7129 13 1 4.2615 4.0579 1.8113 14 1 5.9096 4.3582 0.0580 15 1 4.0328 2.8616 -0.2856 16 6 3.9569 -1.6655 -0.0657 17 6 3.4644 -0.9501 -1.3224 18 7 2.0225 -0.6979 -1.1954 19 6 1.1673 -1.1041 -2.1546 20 8 -0.0157 -0.8392 -2.0660 21 6 1.6680 -1.8718 -3.3144 22 6 2.9568 -1.6144 -3.8408 23 6 3.4061 -2.3139 -4.9021 24 7 2.6390 -3.2802 -5.4757 25 7 2.8282 -4.1545 -6.5558 26 7 1.7574 -4.8661 -6.6577 27 7 0.9025 -4.5378 -5.7557 28 6 1.3891 -3.5654 -4.9964 29 6 0.8838 -2.8540 -3.8951 30 1 -0.3633 -1.0208 -0.1190 31 1 -0.3633 0.4072 0.9435 32 1 -0.3634 0.6134 -0.8245 33 1 1.7660 -0.1696 2.1366 34 1 1.6026 -1.7267 1.2894 35 1 3.6375 1.2232 0.7131 36 1 7.6247 3.0607 1.7572 37 1 5.0413 -1.7693 -0.1060 38 1 3.4983 -2.6527 -0.0087 39 1 3.6503 -1.5768 -2.1945 40 1 3.9928 -0.0029 -1.4311 41 1 3.5796 -0.8536 -3.3939 42 1 4.3891 -2.1079 -5.2992 43 1 -0.1011 -3.0696 -3.5080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044703348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:31 Heat of formation + Delta-G solvation = 152.439412 kcal Electronic energy + Delta-G solvation = -28767.098446 eV Core-core repulsion = 24851.889351 eV Total energy + Delta-G solvation = -3915.209095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.59936 -42.05201 -39.78335 -38.91431 -36.07531 -35.43400 -34.37359 -33.75994 -32.70131 -31.77503 -31.41227 -28.60840 -26.75065 -26.24349 -25.52308 -24.87557 -24.01662 -23.19660 -21.83968 -20.27102 -19.83049 -19.67368 -18.99754 -18.09209 -17.55144 -16.96433 -16.86105 -16.70160 -16.23280 -16.07830 -15.76308 -15.30073 -15.08914 -14.81681 -14.50913 -14.40148 -14.26506 -14.20385 -13.84263 -13.68819 -13.35476 -13.14350 -13.01665 -12.91355 -12.79753 -12.52749 -12.51779 -12.30657 -12.08778 -11.94982 -11.89122 -11.67761 -11.44781 -11.21607 -10.87782 -10.29814 -9.84261 -9.61967 -9.22651 -7.95225 -5.27618 -1.05597 -0.78828 0.55045 0.86437 1.30588 1.39608 1.44533 1.51549 1.61887 2.06424 2.49559 2.53096 2.80977 3.11193 3.35187 3.37296 3.63507 3.65304 3.76571 3.92259 3.96460 4.02353 4.02582 4.21410 4.29314 4.32755 4.45676 4.48281 4.59505 4.62471 4.69468 4.76981 4.85288 4.94514 5.04256 5.11966 5.17812 5.24365 5.26453 5.31845 5.44341 5.66459 5.87469 6.27305 6.30190 6.92927 7.08095 7.15721 7.91743 8.09911 9.26397 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016377 B = 0.003499 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.295897 B = 8001.078599 C = 8825.150393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.143 3.857 3 H 0.064 0.936 4 C -0.128 4.128 5 C 0.169 3.831 6 H 0.047 0.953 7 N -0.745 5.745 8 C -0.216 4.216 9 H 0.060 0.940 10 C -0.061 4.061 11 N -0.986 5.986 12 Si 0.943 3.057 13 H -0.288 1.288 14 H -0.303 1.303 15 H -0.245 1.245 16 C -0.144 4.144 17 C 0.081 3.919 18 N -0.584 5.584 19 C 0.561 3.439 20 O -0.540 6.540 21 C -0.052 4.052 22 C -0.120 4.120 23 C 0.117 3.883 24 N -0.294 5.294 25 N -0.122 5.122 26 N -0.030 5.030 27 N -0.341 5.341 28 C 0.231 3.769 29 C -0.033 4.033 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.364 0.636 36 H 0.255 0.745 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.131 0.869 40 H 0.077 0.923 41 H 0.214 0.786 42 H 0.228 0.772 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.323 -7.624 -10.332 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.041 3.959 3 H 0.082 0.918 4 C -0.166 4.166 5 C 0.061 3.939 6 H 0.065 0.935 7 N -0.390 5.390 8 C -0.347 4.347 9 H 0.078 0.922 10 C -0.253 4.253 11 N -0.637 5.637 12 Si 0.772 3.228 13 H -0.215 1.215 14 H -0.230 1.230 15 H -0.170 1.170 16 C -0.184 4.184 17 C -0.040 4.040 18 N -0.316 5.316 19 C 0.349 3.651 20 O -0.419 6.419 21 C -0.064 4.064 22 C -0.142 4.142 23 C -0.009 4.009 24 N -0.074 5.074 25 N -0.105 5.105 26 N -0.023 5.023 27 N -0.203 5.203 28 C -0.022 4.022 29 C -0.057 4.057 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.198 0.802 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.148 0.852 40 H 0.095 0.905 41 H 0.230 0.770 42 H 0.245 0.755 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.716 -8.650 -11.422 18.508 hybrid contribution 0.267 1.746 0.574 1.857 sum -11.449 -6.904 -10.848 17.217 Atomic orbital electron populations 1.22106 0.91994 1.03220 1.01210 1.21304 0.95767 0.95092 0.83776 0.91785 1.22208 0.95150 1.01999 0.97280 1.20414 0.91731 0.85286 0.96461 0.93499 1.42832 1.12579 1.07182 1.76363 1.18989 0.89478 0.94610 1.31608 0.92208 1.25369 0.97058 0.99941 1.02893 1.69868 1.15825 1.22332 1.55648 0.85604 0.78371 0.80034 0.78827 1.21475 1.22979 1.16959 1.22293 1.01566 0.98899 0.95687 1.22694 0.78424 1.02261 1.00632 1.48094 1.08096 1.55771 1.19601 1.17975 0.85575 0.79487 0.82091 1.90903 1.16798 1.57139 1.77088 1.20330 0.94677 0.95420 0.96005 1.22049 0.95217 1.02216 0.94741 1.22411 0.99079 0.86263 0.93183 1.49180 1.13071 1.24451 1.20677 1.82721 1.18711 1.04718 1.04367 1.77851 0.95632 1.15258 1.13578 1.75146 1.24110 1.15075 1.05982 1.22811 0.85084 0.96282 0.97996 1.20678 1.01848 0.92755 0.90371 0.91763 0.92368 0.91880 0.90345 0.89469 0.80204 0.93652 0.91297 0.90498 0.85228 0.90490 0.76968 0.75532 0.79974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 7.60 71.98 0.55 -2.26 16 2 C 0.14 3.28 3.19 44.97 0.14 3.43 16 3 H 0.06 1.66 6.65 -2.38 -0.02 1.65 16 4 C -0.13 -2.96 5.07 30.67 0.16 -2.80 16 5 C 0.17 4.90 3.10 45.02 0.14 5.04 16 6 H 0.05 1.51 8.08 -2.39 -0.02 1.49 16 7 N -0.75 -28.15 4.12 -322.79 -1.33 -29.47 16 8 C -0.22 -10.64 10.41 84.03 0.87 -9.77 16 9 H 0.06 3.29 8.06 -2.91 -0.02 3.27 16 10 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 11 N -0.99 -58.91 13.97 21.65 0.30 -58.61 16 12 Si 0.94 41.04 27.74 68.60 1.90 42.95 16 13 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 15 H -0.25 -9.14 6.52 99.48 0.65 -8.49 16 16 C -0.14 -3.30 5.76 30.53 0.18 -3.13 16 17 C 0.08 1.50 4.69 86.22 0.40 1.90 16 18 N -0.58 -11.71 2.98 -799.28 -2.38 -14.09 16 19 C 0.56 10.99 7.29 86.78 0.63 11.62 16 20 O -0.54 -13.30 12.32 -3.89 -0.05 -13.34 16 21 C -0.05 -0.78 5.54 -19.87 -0.11 -0.89 16 22 C -0.12 -1.15 7.40 22.31 0.17 -0.98 16 23 C 0.12 1.15 11.19 83.25 0.93 2.08 16 24 N -0.29 -5.43 3.94 -193.23 -0.76 -6.19 16 25 N -0.12 -2.92 13.98 37.02 0.52 -2.40 16 26 N -0.03 -0.83 13.35 37.02 0.49 -0.34 16 27 N -0.34 -8.96 12.27 -55.72 -0.68 -9.65 16 28 C 0.23 4.81 8.02 134.05 1.07 5.89 16 29 C -0.03 -0.54 9.72 22.88 0.22 -0.32 16 30 H 0.06 1.45 6.80 -2.39 -0.02 1.44 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.54 6.69 -2.39 -0.02 1.52 16 33 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.36 13.36 3.93 -92.71 -0.36 13.00 16 36 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.13 1.49 3.47 -3.70 -0.01 1.48 16 40 H 0.08 1.70 7.74 -2.39 -0.02 1.68 16 41 H 0.21 1.25 5.41 -2.91 -0.02 1.24 16 42 H 0.23 0.47 8.06 -2.91 -0.02 0.44 16 43 H 0.18 2.74 8.00 -2.91 -0.02 2.72 16 Total: -1.00 -70.32 341.78 4.48 -65.83 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.65 Total: 18.30 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 5.82 Total: 7.01 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -3.84 Total: -120.75 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.05 Total: -13.34 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.90 Total: 42.95 kcal Total: -70.32 4.48 -65.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044703348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.271 kcal (2) G-P(sol) polarization free energy of solvation -70.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds