Wall clock time and date at job start Tue Mar 31 2020 05:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.58867 * 2 1 4 4 C 1.53194 * 109.58488 * 120.44087 * 2 1 3 5 5 C 1.53042 * 109.31275 * 174.43465 * 4 2 1 6 6 H 1.09000 * 109.45916 * 58.62972 * 5 4 2 7 7 N 1.46502 * 109.45672 * 178.60113 * 5 4 2 8 8 C 1.36941 * 119.99641 * 205.02729 * 7 5 4 9 9 H 1.07995 * 120.00000 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99870 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99954 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99875 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47390 * 59.99786 * 12 10 8 14 14 H 1.48500 * 109.47333 * 299.99662 * 12 10 8 15 15 H 1.48503 * 109.47099 * 179.97438 * 12 10 8 16 16 C 1.53040 * 109.52614 * 298.61660 * 5 4 2 17 17 C 1.53191 * 109.31395 * 61.37137 * 16 5 4 18 18 N 1.46921 * 108.77421 * 305.36576 * 17 16 5 19 19 C 1.34778 * 120.62839 * 233.58492 * 18 17 16 20 20 O 1.21554 * 120.00121 * 174.10325 * 19 18 17 21 21 C 1.47825 * 120.00176 * 354.10411 * 19 18 17 22 22 C 1.41578 * 120.37264 * 324.74658 * 21 19 18 23 23 C 1.34817 * 120.11286 * 179.70829 * 22 21 19 24 24 N 1.36061 * 120.82741 * 0.56774 * 23 22 21 25 25 N 1.40255 * 133.72846 * 179.70565 * 24 23 22 26 26 N 1.28969 * 107.01561 * 180.02562 * 25 24 23 27 27 N 1.28538 * 110.84656 * 0.02562 * 26 25 24 28 28 C 1.32619 * 110.18534 * 0.02562 * 27 26 25 29 29 C 1.38459 * 120.37653 * 145.01544 * 21 19 18 30 30 H 1.08999 * 109.47315 * 176.51846 * 1 2 3 31 31 H 1.08998 * 109.47128 * 296.52744 * 1 2 3 32 32 H 1.09006 * 109.47093 * 56.52117 * 1 2 3 33 33 H 1.08997 * 109.50593 * 54.47853 * 4 2 1 34 34 H 1.09003 * 109.48758 * 294.38043 * 4 2 1 35 35 H 0.96991 * 120.00307 * 25.02833 * 7 5 4 36 36 H 0.97001 * 119.99950 * 0.02562 * 11 10 8 37 37 H 1.09006 * 109.49725 * 181.32518 * 16 5 4 38 38 H 1.08999 * 109.49549 * 301.41488 * 16 5 4 39 39 H 1.09000 * 109.58351 * 65.15623 * 17 16 5 40 40 H 1.09000 * 109.58334 * 185.43216 * 17 16 5 41 41 H 1.08001 * 119.94252 * 359.97188 * 22 21 19 42 42 H 1.08006 * 119.58536 * 180.25634 * 23 22 21 43 43 H 1.07998 * 120.51393 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7313 1.2444 5 6 3.5675 -0.8495 1.1691 6 1 4.0059 0.1460 1.0994 7 7 4.0651 -1.5188 2.3735 8 6 5.3493 -1.3017 2.7964 9 1 5.9954 -0.6374 2.2417 10 6 5.8210 -1.9362 3.9373 11 7 5.0338 -2.7462 4.6130 12 14 7.5726 -1.6395 4.5144 13 1 7.7606 -0.1951 4.8036 14 1 8.5217 -2.0592 3.4522 15 1 7.8280 -2.4278 5.7468 16 6 3.9568 -1.6656 -0.0656 17 6 3.4650 -0.9453 -1.3249 18 7 2.0226 -0.6980 -1.1953 19 6 1.1674 -1.1034 -2.1550 20 8 -0.0313 -0.9898 -1.9884 21 6 1.6873 -1.6862 -3.4101 22 6 2.8929 -1.2066 -3.9765 23 6 3.3653 -1.7459 -5.1183 24 7 2.6910 -2.7456 -5.7484 25 7 2.9211 -3.4821 -6.9196 26 7 1.9433 -4.3144 -7.0403 27 7 1.1114 -4.1867 -6.0688 28 6 1.5179 -3.2343 -5.2403 29 6 0.9978 -2.7034 -4.0480 30 1 -0.3634 -1.0257 -0.0624 31 1 -0.3633 0.4590 0.9194 32 1 -0.3633 0.5669 -0.8572 33 1 1.6031 -1.7273 1.2888 34 1 1.7657 -0.1699 2.1365 35 1 3.4849 -2.1157 2.8715 36 1 4.1241 -2.9000 4.3134 37 1 5.0412 -1.7695 -0.1059 38 1 3.4983 -2.6528 -0.0085 39 1 3.9904 0.0038 -1.4316 40 1 3.6541 -1.5679 -2.1994 41 1 3.4374 -0.4103 -3.4909 42 1 4.2881 -1.3763 -5.5407 43 1 0.0741 -3.0820 -3.6360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044703349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:37 Heat of formation + Delta-G solvation = 155.945147 kcal Electronic energy + Delta-G solvation = -28171.881687 eV Core-core repulsion = 24256.824612 eV Total energy + Delta-G solvation = -3915.057075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.80555 -41.11427 -38.94144 -37.72419 -35.01024 -34.62515 -33.40944 -32.26316 -31.92824 -31.00725 -29.29090 -27.26355 -25.93103 -25.31389 -24.19824 -23.35767 -23.11185 -22.21717 -20.74536 -19.84288 -19.01359 -18.23802 -17.43081 -17.29381 -16.82922 -16.12909 -15.90619 -15.63168 -15.43295 -14.95158 -14.38857 -14.22623 -13.78793 -13.67403 -13.62010 -13.51110 -13.39425 -12.98519 -12.88491 -12.54983 -12.36449 -12.25334 -12.00540 -11.82169 -11.64362 -11.46503 -11.06112 -10.96608 -10.71739 -10.68545 -10.46542 -10.22994 -10.07158 -9.49133 -9.28322 -9.14445 -9.02200 -8.75858 -7.17512 -6.20679 -3.22347 -0.36388 -0.08457 1.23484 1.64623 2.08984 2.41618 2.79839 3.22978 3.43810 3.46635 3.52220 3.64714 3.77067 3.97062 4.33168 4.38523 4.55122 4.71474 4.72964 4.89716 4.92911 5.00003 5.03519 5.11510 5.19978 5.22237 5.28530 5.38996 5.48818 5.53405 5.65958 5.77971 5.80219 5.88191 5.96884 6.07614 6.17090 6.20892 6.26644 6.49485 6.63123 6.79138 7.09242 7.67864 7.75310 7.92645 8.64476 9.10043 9.96585 10.10889 11.27259 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.002938 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.467720 B = 9528.293879 C =10703.025723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.149 3.851 3 H 0.078 0.922 4 C -0.138 4.138 5 C 0.184 3.816 6 H 0.050 0.950 7 N -0.735 5.735 8 C -0.335 4.335 9 H 0.065 0.935 10 C -0.043 4.043 11 N -0.941 5.941 12 Si 1.079 2.921 13 H -0.295 1.295 14 H -0.295 1.295 15 H -0.285 1.285 16 C -0.152 4.152 17 C 0.091 3.909 18 N -0.589 5.589 19 C 0.559 3.441 20 O -0.516 6.516 21 C -0.063 4.063 22 C -0.118 4.118 23 C 0.105 3.895 24 N -0.295 5.295 25 N -0.108 5.108 26 N -0.008 5.008 27 N -0.314 5.314 28 C 0.240 3.760 29 C -0.031 4.031 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.367 0.633 36 H 0.256 0.744 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.180 0.820 42 H 0.189 0.811 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 6.864 -17.606 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 H 0.096 0.904 4 C -0.177 4.177 5 C 0.074 3.926 6 H 0.068 0.932 7 N -0.376 5.376 8 C -0.466 4.466 9 H 0.083 0.917 10 C -0.241 4.241 11 N -0.586 5.586 12 Si 0.909 3.091 13 H -0.222 1.222 14 H -0.222 1.222 15 H -0.210 1.210 16 C -0.193 4.193 17 C -0.032 4.032 18 N -0.322 5.322 19 C 0.345 3.655 20 O -0.393 6.393 21 C -0.075 4.075 22 C -0.141 4.141 23 C -0.021 4.021 24 N -0.076 5.076 25 N -0.091 5.091 26 N -0.001 5.001 27 N -0.175 5.175 28 C -0.015 4.015 29 C -0.055 4.055 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.200 0.800 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.197 0.803 42 H 0.206 0.794 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.571 5.707 -17.748 19.195 hybrid contribution -0.855 0.757 -0.419 1.217 sum -5.426 6.464 -18.167 20.032 Atomic orbital electron populations 1.22245 0.92505 1.03866 1.00937 1.21416 0.95677 0.95098 0.83181 0.90436 1.22340 0.97611 1.01062 0.96653 1.20100 0.90714 0.95021 0.86788 0.93191 1.42434 1.13115 1.54656 1.27407 1.19999 0.89579 1.26540 1.10496 0.91725 1.25778 1.06255 0.97428 0.94617 1.70890 1.08171 1.38138 1.41380 0.83262 0.74083 0.75529 0.76213 1.22213 1.22242 1.21004 1.22700 1.02033 1.00020 0.94553 1.22387 0.79283 1.01006 1.00481 1.48128 1.07706 1.56454 1.19887 1.17846 0.86261 0.78859 0.82508 1.90914 1.14700 1.54885 1.78762 1.20484 0.94552 0.95907 0.96528 1.21509 0.95991 1.02126 0.94503 1.21615 0.99036 0.88233 0.93259 1.49038 1.16709 1.24299 1.17508 1.82823 1.20294 1.07170 0.98850 1.77892 0.96314 1.11816 1.14075 1.75265 1.23033 1.17304 1.01852 1.22735 0.86782 0.94552 0.97390 1.20704 1.00808 0.94542 0.89448 0.90942 0.93374 0.91213 0.91698 0.90386 0.79964 0.93310 0.90262 0.92172 0.90562 0.89611 0.80284 0.79393 0.80515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 7.59 37.16 0.28 -1.33 16 2 C 0.15 1.71 3.49 -67.60 -0.24 1.47 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.14 -1.96 4.84 -26.61 -0.13 -2.09 16 5 C 0.18 3.11 2.73 -67.89 -0.19 2.92 16 6 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 7 N -0.73 -16.73 5.12 -53.38 -0.27 -17.00 16 8 C -0.34 -8.71 9.93 -15.06 -0.15 -8.86 16 9 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 10 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 11 N -0.94 -28.00 13.70 55.49 0.76 -27.24 16 12 Si 1.08 24.62 29.92 -169.99 -5.09 19.53 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 14 H -0.30 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C -0.15 -2.15 5.66 -26.61 -0.15 -2.30 16 17 C 0.09 0.85 4.78 -3.71 -0.02 0.83 16 18 N -0.59 -6.12 2.97 -166.34 -0.49 -6.62 16 19 C 0.56 5.91 7.31 -12.34 -0.09 5.82 16 20 O -0.52 -6.70 12.24 5.32 0.07 -6.63 16 21 C -0.06 -0.53 5.30 -104.62 -0.55 -1.08 16 22 C -0.12 -0.66 7.32 -39.52 -0.29 -0.95 16 23 C 0.11 0.62 11.19 -16.89 -0.19 0.43 16 24 N -0.30 -2.94 3.94 -12.43 -0.05 -2.98 16 25 N -0.11 -1.33 13.98 60.35 0.84 -0.48 16 26 N -0.01 -0.11 13.35 60.35 0.81 0.70 16 27 N -0.31 -4.19 12.27 31.03 0.38 -3.81 16 28 C 0.24 2.64 8.02 -156.37 -1.25 1.39 16 29 C -0.03 -0.29 9.72 -38.65 -0.38 -0.66 16 30 H 0.07 0.96 6.75 -51.93 -0.35 0.61 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.83 6.75 -51.93 -0.35 0.48 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.37 8.85 6.63 -40.82 -0.27 8.58 16 36 H 0.26 7.48 6.77 -40.82 -0.28 7.20 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 40 H 0.09 0.62 4.46 -51.93 -0.23 0.39 16 41 H 0.18 0.55 6.09 -52.49 -0.32 0.24 16 42 H 0.19 0.44 8.06 -52.48 -0.42 0.02 16 43 H 0.18 1.50 8.01 -52.49 -0.42 1.08 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -33.33 348.52 -6.45 -39.78 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.22 Total: 5.21 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -3.43 Total: -5.70 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 1.97 Total: -57.44 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: 0.07 Total: -6.63 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.09 Total: 19.53 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.33 -6.45 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044703349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.725 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds