Wall clock time and date at job start Tue Mar 31 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.58867 * 2 1 4 4 C 1.53194 * 109.58488 * 120.44087 * 2 1 3 5 5 C 1.53042 * 109.31275 * 174.43465 * 4 2 1 6 6 H 1.09000 * 109.45916 * 58.62972 * 5 4 2 7 7 N 1.46502 * 109.45672 * 178.60113 * 5 4 2 8 8 C 1.36941 * 119.99641 * 205.02729 * 7 5 4 9 9 H 1.07995 * 120.00000 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99870 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99954 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99875 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47390 * 59.99786 * 12 10 8 14 14 H 1.48500 * 109.47333 * 299.99662 * 12 10 8 15 15 H 1.48503 * 109.47099 * 179.97438 * 12 10 8 16 16 C 1.53040 * 109.52614 * 298.61660 * 5 4 2 17 17 C 1.53191 * 109.31395 * 61.37137 * 16 5 4 18 18 N 1.46921 * 108.77421 * 305.36576 * 17 16 5 19 19 C 1.34778 * 120.62839 * 233.58492 * 18 17 16 20 20 O 1.21554 * 120.00121 * 174.10325 * 19 18 17 21 21 C 1.47825 * 120.00176 * 354.10411 * 19 18 17 22 22 C 1.41578 * 120.37264 * 324.74658 * 21 19 18 23 23 C 1.34817 * 120.11286 * 179.70829 * 22 21 19 24 24 N 1.36061 * 120.82741 * 0.56774 * 23 22 21 25 25 N 1.40255 * 133.72846 * 179.70565 * 24 23 22 26 26 N 1.28969 * 107.01561 * 180.02562 * 25 24 23 27 27 N 1.28538 * 110.84656 * 0.02562 * 26 25 24 28 28 C 1.32619 * 110.18534 * 0.02562 * 27 26 25 29 29 C 1.38459 * 120.37653 * 145.01544 * 21 19 18 30 30 H 1.08999 * 109.47315 * 176.51846 * 1 2 3 31 31 H 1.08998 * 109.47128 * 296.52744 * 1 2 3 32 32 H 1.09006 * 109.47093 * 56.52117 * 1 2 3 33 33 H 1.08997 * 109.50593 * 54.47853 * 4 2 1 34 34 H 1.09003 * 109.48758 * 294.38043 * 4 2 1 35 35 H 0.96991 * 120.00307 * 25.02833 * 7 5 4 36 36 H 0.97001 * 119.99950 * 0.02562 * 11 10 8 37 37 H 1.09006 * 109.49725 * 181.32518 * 16 5 4 38 38 H 1.08999 * 109.49549 * 301.41488 * 16 5 4 39 39 H 1.09000 * 109.58351 * 65.15623 * 17 16 5 40 40 H 1.09000 * 109.58334 * 185.43216 * 17 16 5 41 41 H 1.08001 * 119.94252 * 359.97188 * 22 21 19 42 42 H 1.08006 * 119.58536 * 180.25634 * 23 22 21 43 43 H 1.07998 * 120.51393 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7313 1.2444 5 6 3.5675 -0.8495 1.1691 6 1 4.0059 0.1460 1.0994 7 7 4.0651 -1.5188 2.3735 8 6 5.3493 -1.3017 2.7964 9 1 5.9954 -0.6374 2.2417 10 6 5.8210 -1.9362 3.9373 11 7 5.0338 -2.7462 4.6130 12 14 7.5726 -1.6395 4.5144 13 1 7.7606 -0.1951 4.8036 14 1 8.5217 -2.0592 3.4522 15 1 7.8280 -2.4278 5.7468 16 6 3.9568 -1.6656 -0.0656 17 6 3.4650 -0.9453 -1.3249 18 7 2.0226 -0.6980 -1.1953 19 6 1.1674 -1.1034 -2.1550 20 8 -0.0313 -0.9898 -1.9884 21 6 1.6873 -1.6862 -3.4101 22 6 2.8929 -1.2066 -3.9765 23 6 3.3653 -1.7459 -5.1183 24 7 2.6910 -2.7456 -5.7484 25 7 2.9211 -3.4821 -6.9196 26 7 1.9433 -4.3144 -7.0403 27 7 1.1114 -4.1867 -6.0688 28 6 1.5179 -3.2343 -5.2403 29 6 0.9978 -2.7034 -4.0480 30 1 -0.3634 -1.0257 -0.0624 31 1 -0.3633 0.4590 0.9194 32 1 -0.3633 0.5669 -0.8572 33 1 1.6031 -1.7273 1.2888 34 1 1.7657 -0.1699 2.1365 35 1 3.4849 -2.1157 2.8715 36 1 4.1241 -2.9000 4.3134 37 1 5.0412 -1.7695 -0.1059 38 1 3.4983 -2.6528 -0.0085 39 1 3.9904 0.0038 -1.4316 40 1 3.6541 -1.5679 -2.1994 41 1 3.4374 -0.4103 -3.4909 42 1 4.2881 -1.3763 -5.5407 43 1 0.0741 -3.0820 -3.6360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044703349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:36 Heat of formation + Delta-G solvation = 133.307768 kcal Electronic energy + Delta-G solvation = -28172.863318 eV Core-core repulsion = 24256.824612 eV Total energy + Delta-G solvation = -3916.038705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.60490 -41.99496 -39.74061 -38.81340 -36.51274 -35.43887 -34.35884 -33.77823 -32.77148 -31.74040 -30.81252 -28.44099 -26.73531 -26.10781 -25.73665 -24.58537 -23.99731 -23.18905 -21.91438 -20.86416 -19.78067 -19.33618 -18.96588 -18.10474 -17.61360 -17.12459 -16.81591 -16.57801 -16.35083 -16.08913 -15.88864 -15.38977 -15.12958 -14.76564 -14.67109 -14.44715 -14.29608 -13.97239 -13.77894 -13.49908 -13.25140 -13.19150 -13.10509 -12.86690 -12.71632 -12.58176 -12.40138 -12.30994 -12.05686 -11.98677 -11.87606 -11.62108 -11.25483 -11.15968 -10.83278 -10.36418 -9.86306 -9.68418 -9.08774 -8.33903 -5.28834 -1.06504 -0.78163 0.55908 0.86626 1.27994 1.58167 1.61198 1.70537 1.86019 2.06114 2.47420 2.74574 2.79747 3.09838 3.36381 3.44356 3.61484 3.65006 3.73427 3.91276 3.95650 4.01633 4.04551 4.18590 4.25281 4.30708 4.46570 4.52142 4.57606 4.60559 4.63946 4.69353 4.76834 4.83271 4.95762 5.00790 5.12960 5.19001 5.22856 5.38985 5.47712 5.62505 5.65793 6.23565 6.52876 6.89995 7.07085 7.13071 8.02686 8.16286 9.17843 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.002938 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.467720 B = 9528.293879 C =10703.025723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.156 3.844 3 H 0.102 0.898 4 C -0.128 4.128 5 C 0.176 3.824 6 H 0.055 0.945 7 N -0.752 5.752 8 C -0.320 4.320 9 H 0.075 0.925 10 C -0.110 4.110 11 N -0.982 5.982 12 Si 1.124 2.876 13 H -0.277 1.277 14 H -0.276 1.276 15 H -0.301 1.301 16 C -0.144 4.144 17 C 0.098 3.902 18 N -0.588 5.588 19 C 0.561 3.439 20 O -0.541 6.541 21 C -0.054 4.054 22 C -0.104 4.104 23 C 0.114 3.886 24 N -0.294 5.294 25 N -0.121 5.121 26 N -0.032 5.032 27 N -0.346 5.346 28 C 0.229 3.771 29 C -0.041 4.041 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.355 0.645 36 H 0.243 0.757 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.219 0.781 42 H 0.233 0.767 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 9.554 -19.210 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.119 0.881 4 C -0.167 4.167 5 C 0.068 3.932 6 H 0.073 0.927 7 N -0.393 5.393 8 C -0.452 4.452 9 H 0.093 0.907 10 C -0.300 4.300 11 N -0.631 5.631 12 Si 0.950 3.050 13 H -0.203 1.203 14 H -0.202 1.202 15 H -0.228 1.228 16 C -0.185 4.185 17 C -0.024 4.024 18 N -0.320 5.320 19 C 0.349 3.651 20 O -0.420 6.420 21 C -0.066 4.066 22 C -0.127 4.127 23 C -0.012 4.012 24 N -0.074 5.074 25 N -0.104 5.104 26 N -0.024 5.024 27 N -0.207 5.207 28 C -0.023 4.023 29 C -0.065 4.065 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.186 0.814 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.235 0.765 42 H 0.249 0.751 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.752 8.432 -19.425 21.355 hybrid contribution -1.469 0.032 0.118 1.474 sum -4.221 8.464 -19.308 21.500 Atomic orbital electron populations 1.22125 0.92640 1.02625 1.01312 1.21330 0.95443 0.95756 0.82150 0.88070 1.22201 0.95813 1.00470 0.98186 1.20417 0.92104 0.94933 0.85714 0.92690 1.42731 1.12204 1.54984 1.29386 1.20377 0.90686 1.24641 1.09487 0.90744 1.27107 1.09309 0.97868 0.95764 1.71001 1.08118 1.40951 1.42999 0.82666 0.70706 0.76109 0.75560 1.20257 1.20154 1.22773 1.22472 1.01279 0.99045 0.95672 1.22512 0.78460 1.02787 0.98607 1.48122 1.08233 1.56219 1.19446 1.18039 0.85858 0.78246 0.83001 1.90920 1.15972 1.55714 1.79389 1.20390 0.95445 0.95311 0.95430 1.21909 0.94565 1.02173 0.94037 1.22513 0.99741 0.86263 0.92680 1.49198 1.16596 1.24645 1.16931 1.82695 1.20202 1.07597 0.99955 1.77847 0.96937 1.12835 1.14811 1.75144 1.24000 1.18935 1.02641 1.22751 0.87414 0.94560 0.97596 1.20683 1.01244 0.95354 0.89256 0.92988 0.92733 0.91085 0.93451 0.91256 0.81403 0.94697 0.91307 0.94318 0.86857 0.86780 0.76496 0.75057 0.80732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 7.59 71.98 0.55 -2.28 16 2 C 0.16 3.17 3.49 44.97 0.16 3.33 16 3 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 4 C -0.13 -3.52 4.84 30.67 0.15 -3.37 16 5 C 0.18 5.68 2.73 45.02 0.12 5.80 16 6 H 0.06 1.74 8.08 -2.39 -0.02 1.72 16 7 N -0.75 -34.35 5.12 -322.81 -1.65 -36.00 16 8 C -0.32 -16.46 9.93 84.03 0.83 -15.62 16 9 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 10 C -0.11 -6.06 5.50 84.86 0.47 -5.59 16 11 N -0.98 -59.93 13.70 21.65 0.30 -59.64 16 12 Si 1.12 49.22 29.92 68.60 2.05 51.27 16 13 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16 14 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 15 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 16 C -0.14 -3.74 5.66 30.67 0.17 -3.57 16 17 C 0.10 1.35 4.78 86.36 0.41 1.77 16 18 N -0.59 -10.17 2.97 -798.45 -2.37 -12.54 16 19 C 0.56 10.30 7.31 86.78 0.63 10.93 16 20 O -0.54 -13.26 12.24 -3.89 -0.05 -13.30 16 21 C -0.05 -0.73 5.30 -19.86 -0.11 -0.84 16 22 C -0.10 -0.61 7.32 22.31 0.16 -0.45 16 23 C 0.11 0.80 11.19 83.25 0.93 1.73 16 24 N -0.29 -5.16 3.94 -193.24 -0.76 -5.92 16 25 N -0.12 -2.85 13.98 37.02 0.52 -2.33 16 26 N -0.03 -0.87 13.35 37.02 0.49 -0.38 16 27 N -0.35 -9.36 12.27 -55.74 -0.68 -10.05 16 28 C 0.23 4.86 8.02 134.05 1.07 5.93 16 29 C -0.04 -0.71 9.72 22.87 0.22 -0.49 16 30 H 0.05 1.35 6.75 -2.39 -0.02 1.33 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.56 6.75 -2.38 -0.02 1.54 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.35 17.69 6.63 -92.71 -0.61 17.07 16 36 H 0.24 14.79 6.77 -92.71 -0.63 14.17 16 37 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.11 0.89 8.05 -2.39 -0.02 0.87 16 40 H 0.11 0.99 4.46 -2.39 -0.01 0.97 16 41 H 0.22 -0.30 6.09 -2.91 -0.02 -0.32 16 42 H 0.23 -0.41 8.06 -2.91 -0.02 -0.43 16 43 H 0.18 2.98 8.01 -2.91 -0.02 2.96 16 Total: -1.00 -77.01 348.52 4.22 -72.79 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.59 Total: 18.80 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 5.78 Total: -2.71 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -4.16 Total: -126.85 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.05 Total: -13.30 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.05 Total: 51.27 kcal Total: -77.01 4.22 -72.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044703349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.102 kcal (2) G-P(sol) polarization free energy of solvation -77.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds