Wall clock time and date at job start Tue Mar 31 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.58316 * 2 1 4 4 C 1.53192 * 109.58584 * 239.71989 * 2 1 3 5 5 C 1.53042 * 109.31194 * 185.43536 * 4 2 1 6 6 H 1.08993 * 109.46200 * 181.38183 * 5 4 2 7 7 N 1.46500 * 109.46030 * 301.35849 * 5 4 2 8 8 C 1.36938 * 120.00047 * 205.00231 * 7 5 4 9 9 H 1.07998 * 119.99766 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99975 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00229 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99927 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47398 * 89.99777 * 12 10 8 14 14 H 1.48501 * 109.47324 * 209.99999 * 12 10 8 15 15 H 1.48501 * 109.47109 * 329.99869 * 12 10 8 16 16 C 1.53044 * 109.53927 * 61.36198 * 5 4 2 17 17 C 1.53198 * 109.30973 * 298.63670 * 16 5 4 18 18 N 1.46918 * 108.77671 * 54.63448 * 17 16 5 19 19 C 1.34783 * 120.63054 * 126.39233 * 18 17 16 20 20 O 1.21557 * 120.00059 * 186.22494 * 19 18 17 21 21 C 1.47823 * 119.99882 * 6.21491 * 19 18 17 22 22 C 1.41579 * 120.37061 * 28.38543 * 21 19 18 23 23 C 1.34814 * 120.11083 * 179.77344 * 22 21 19 24 24 N 1.36062 * 120.83045 * 0.48475 * 23 22 21 25 25 N 1.40246 * 133.73373 * 179.77591 * 24 23 22 26 26 N 1.28974 * 107.02266 * 179.97438 * 25 24 23 27 27 N 1.28537 * 110.83915 * 0.02562 * 26 25 24 28 28 C 1.32610 * 110.18987 * 359.97438 * 27 26 25 29 29 C 1.38457 * 120.37319 * 208.65135 * 21 19 18 30 30 H 1.09000 * 109.47239 * 183.16588 * 1 2 3 31 31 H 1.09004 * 109.47513 * 303.16928 * 1 2 3 32 32 H 1.09000 * 109.47241 * 63.16684 * 1 2 3 33 33 H 1.08994 * 109.49635 * 305.38471 * 4 2 1 34 34 H 1.08991 * 109.49807 * 65.45120 * 4 2 1 35 35 H 0.97003 * 120.00136 * 24.99685 * 7 5 4 36 36 H 0.96998 * 120.00277 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.49673 * 58.58711 * 16 5 4 38 38 H 1.08997 * 109.49845 * 178.68653 * 16 5 4 39 39 H 1.09002 * 109.57979 * 174.42186 * 17 16 5 40 40 H 1.08995 * 109.58633 * 294.69925 * 17 16 5 41 41 H 1.07998 * 119.94512 * 0.02562 * 22 21 19 42 42 H 1.08002 * 119.58698 * 180.25208 * 23 22 21 43 43 H 1.08001 * 120.52077 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2464 5 6 3.5678 -0.8433 -1.1730 6 1 3.9380 -1.3390 -2.0703 7 7 4.1547 0.4956 -1.0775 8 6 5.4381 0.7125 -1.5029 9 1 6.0178 -0.1036 -1.9084 10 6 5.9941 1.9812 -1.4129 11 7 5.2875 2.9759 -0.9192 12 14 7.7450 2.2769 -1.9926 13 1 7.7340 2.6544 -3.4288 14 1 8.3512 3.3746 -1.1970 15 1 8.5420 1.0369 -1.8128 16 6 3.9603 -1.6608 0.0599 17 6 3.4684 -0.9435 1.3210 18 7 2.0254 -0.6990 1.1936 19 6 1.1721 -1.1081 2.1534 20 8 -0.0272 -1.0022 1.9859 21 6 1.6948 -1.6859 3.4096 22 6 2.9665 -1.3019 3.8994 23 6 3.4361 -1.8287 5.0481 24 7 2.7062 -2.7396 5.7472 25 7 2.9233 -3.4478 6.9380 26 7 1.8832 -4.1849 7.1340 27 7 1.0236 -4.0223 6.1923 28 6 1.4744 -3.1431 5.3079 29 6 0.9487 -2.6127 4.1176 30 1 -0.3634 -1.0261 0.0568 31 1 -0.3634 0.5623 0.8602 32 1 -0.3634 0.4639 -0.9170 33 1 1.6049 -1.7245 -1.2922 34 1 1.7633 -0.1657 -2.1371 35 1 3.6342 1.2285 -0.7130 36 1 5.6758 3.8625 -0.8567 37 1 3.5037 -2.6488 0.0017 38 1 5.0449 -1.7624 0.0988 39 1 3.6576 -1.5684 2.1939 40 1 3.9938 0.0053 1.4301 41 1 3.5595 -0.5827 3.3541 42 1 4.4056 -1.5267 5.4161 43 1 -0.0219 -2.9237 3.7602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044703351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:41 Heat of formation + Delta-G solvation = 164.795081 kcal Electronic energy + Delta-G solvation = -28641.924607 eV Core-core repulsion = 24727.251295 eV Total energy + Delta-G solvation = -3914.673313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.68994 -40.97371 -38.81436 -37.67284 -34.62866 -34.39898 -33.27419 -32.09636 -31.70969 -30.88351 -29.27930 -27.33216 -25.79662 -25.25670 -24.19344 -23.61739 -23.13144 -22.11684 -20.70575 -19.18000 -18.74976 -18.05015 -17.38371 -17.17668 -16.54165 -15.84317 -15.74771 -15.48374 -15.30823 -14.73754 -14.19321 -14.16544 -13.90770 -13.48977 -13.42703 -13.37500 -13.19679 -12.86444 -12.58917 -12.36295 -12.24042 -12.12271 -11.90571 -11.55815 -11.40156 -11.35252 -11.03303 -10.94195 -10.84224 -10.70460 -10.39563 -10.23128 -10.09246 -9.78206 -9.24334 -9.09311 -8.97989 -8.44069 -7.13928 -5.92667 -3.22300 -0.24260 0.04834 1.35957 1.76596 2.24453 2.65138 2.99381 3.32407 3.38369 3.38723 3.40167 3.66861 3.94500 4.14003 4.45559 4.46302 4.57413 4.88538 4.93686 5.06128 5.12336 5.18231 5.23317 5.30851 5.36847 5.42719 5.51663 5.53962 5.57635 5.70926 5.79279 5.88990 5.94251 6.00248 6.14365 6.20380 6.31497 6.36904 6.56939 6.58779 6.66983 6.82791 7.35601 7.56261 7.97016 8.03158 8.25652 9.37592 9.92406 10.27284 11.29439 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003362 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.192333 B = 8326.097390 C = 9575.324465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.146 3.854 3 H 0.086 0.914 4 C -0.134 4.134 5 C 0.172 3.828 6 H 0.053 0.947 7 N -0.722 5.722 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.010 4.010 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.150 4.150 17 C 0.089 3.911 18 N -0.583 5.583 19 C 0.556 3.444 20 O -0.522 6.522 21 C -0.060 4.060 22 C -0.122 4.122 23 C 0.103 3.897 24 N -0.294 5.294 25 N -0.111 5.111 26 N -0.011 5.011 27 N -0.317 5.317 28 C 0.238 3.762 29 C -0.033 4.033 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.383 0.617 36 H 0.256 0.744 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.190 0.810 42 H 0.189 0.811 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 -8.507 7.183 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.044 3.956 3 H 0.104 0.896 4 C -0.173 4.173 5 C 0.062 3.938 6 H 0.071 0.929 7 N -0.365 5.365 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.206 4.206 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.191 4.191 17 C -0.033 4.033 18 N -0.314 5.314 19 C 0.342 3.658 20 O -0.399 6.399 21 C -0.072 4.072 22 C -0.145 4.145 23 C -0.024 4.024 24 N -0.074 5.074 25 N -0.094 5.094 26 N -0.004 5.004 27 N -0.178 5.178 28 C -0.016 4.016 29 C -0.057 4.057 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.207 0.793 42 H 0.206 0.794 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.180 -9.357 8.386 14.003 hybrid contribution 1.306 1.087 -0.898 1.922 sum -4.875 -8.270 7.487 12.175 Atomic orbital electron populations 1.22236 0.92886 1.03372 1.00934 1.21380 0.95061 0.96029 0.83146 0.89593 1.22261 0.97365 1.00417 0.97277 1.20202 0.90432 0.88138 0.95026 0.92923 1.42513 1.13914 1.04615 1.75422 1.19217 0.89758 0.94183 1.34171 0.91170 1.24715 0.98285 0.95871 1.01727 1.69637 1.36578 1.00655 1.51082 0.86239 0.84527 0.77431 0.78234 1.21735 1.21807 1.20779 1.22536 1.01667 0.98040 0.96847 1.22514 0.79114 1.02262 0.99370 1.48081 1.07781 1.55669 1.19889 1.17827 0.86290 0.79113 0.82557 1.90892 1.14681 1.55460 1.78914 1.20546 0.94023 0.96123 0.96505 1.21896 0.95939 1.02066 0.94617 1.21682 0.98741 0.90224 0.91754 1.49040 1.13930 1.27274 1.17138 1.82809 1.19365 1.09963 0.97255 1.77874 0.95382 1.11702 1.15398 1.75233 1.23136 1.18054 1.01361 1.22742 0.85303 0.95904 0.97653 1.20699 1.01334 0.94695 0.88995 0.91251 0.91279 0.93565 0.91887 0.90444 0.78161 0.93410 0.93080 0.90457 0.89694 0.88779 0.79285 0.79376 0.80530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.60 37.16 0.28 -1.54 16 2 C 0.15 2.03 3.19 -67.60 -0.22 1.81 16 3 H 0.09 1.37 6.64 -51.93 -0.34 1.02 16 4 C -0.13 -1.89 5.07 -26.61 -0.13 -2.02 16 5 C 0.17 2.81 3.10 -67.89 -0.21 2.60 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 N -0.72 -15.05 4.31 -53.39 -0.23 -15.28 16 8 C -0.24 -5.86 9.93 -15.06 -0.15 -6.01 16 9 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 10 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 11 N -0.93 -25.37 13.06 55.49 0.72 -24.65 16 12 Si 0.90 20.53 29.55 -169.99 -5.02 15.50 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 C -0.15 -2.03 5.78 -26.61 -0.15 -2.19 16 17 C 0.09 1.06 4.44 -3.71 -0.02 1.04 16 18 N -0.58 -7.29 2.97 -166.34 -0.49 -7.78 16 19 C 0.56 6.79 7.39 -12.34 -0.09 6.70 16 20 O -0.52 -7.48 12.12 5.32 0.06 -7.41 16 21 C -0.06 -0.59 5.50 -104.62 -0.58 -1.17 16 22 C -0.12 -0.96 7.37 -39.52 -0.29 -1.25 16 23 C 0.10 0.79 11.19 -16.89 -0.19 0.60 16 24 N -0.29 -3.25 3.94 -12.43 -0.05 -3.30 16 25 N -0.11 -1.46 13.98 60.35 0.84 -0.61 16 26 N -0.01 -0.15 13.35 60.35 0.81 0.65 16 27 N -0.32 -4.41 12.27 31.03 0.38 -4.03 16 28 C 0.24 2.82 8.02 -156.37 -1.25 1.57 16 29 C -0.03 -0.34 9.70 -38.64 -0.38 -0.71 16 30 H 0.07 0.96 6.76 -51.93 -0.35 0.60 16 31 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.38 8.55 6.06 -40.82 -0.25 8.30 16 36 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 0.77 4.05 -51.93 -0.21 0.56 16 40 H 0.09 1.31 7.60 -51.93 -0.39 0.92 16 41 H 0.19 1.28 5.35 -52.49 -0.28 1.00 16 42 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.18 1.62 7.92 -52.49 -0.42 1.20 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -29.71 344.77 -6.35 -36.06 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.10 Total: 6.59 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.47 Total: -0.92 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 1.98 Total: -55.01 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.06 Total: -7.41 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.71 -6.35 -36.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044703351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.855 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds