Wall clock time and date at job start Tue Mar 31 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08996 * 109.57960 * 2 1 4 4 C 1.53192 * 109.58672 * 239.71480 * 2 1 3 5 5 C 1.53042 * 109.30955 * 185.57962 * 4 2 1 6 6 H 1.08998 * 109.45410 * 301.35273 * 5 4 2 7 7 N 1.46496 * 109.45848 * 181.38412 * 5 4 2 8 8 C 1.36938 * 120.00189 * 154.99389 * 7 5 4 9 9 H 1.08002 * 119.99733 * 359.73108 * 8 7 5 10 10 C 1.38813 * 120.00420 * 179.72471 * 8 7 5 11 11 N 1.31622 * 119.99713 * 359.97438 * 10 8 7 12 12 Si 1.86791 * 120.00061 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47337 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47452 * 119.99933 * 12 10 8 15 15 H 1.48500 * 109.46845 * 239.99874 * 12 10 8 16 16 C 1.53038 * 109.53989 * 61.35885 * 5 4 2 17 17 C 1.53191 * 109.31391 * 298.63578 * 16 5 4 18 18 N 1.46925 * 108.77514 * 54.63990 * 17 16 5 19 19 C 1.34769 * 120.63364 * 126.36727 * 18 17 16 20 20 O 1.21556 * 120.00149 * 186.24236 * 19 18 17 21 21 C 1.47824 * 120.00138 * 6.24287 * 19 18 17 22 22 C 1.41579 * 120.37151 * 28.44481 * 21 19 18 23 23 C 1.34825 * 120.11073 * 179.71134 * 22 21 19 24 24 N 1.36058 * 120.82502 * 0.57113 * 23 22 21 25 25 N 1.40245 * 133.72571 * 179.70966 * 24 23 22 26 26 N 1.28967 * 107.02342 * 179.97438 * 25 24 23 27 27 N 1.28546 * 110.84052 * 359.97438 * 26 25 24 28 28 C 1.32621 * 110.18610 * 0.02562 * 27 26 25 29 29 C 1.38457 * 120.37273 * 208.71779 * 21 19 18 30 30 H 1.09005 * 109.46690 * 183.15749 * 1 2 3 31 31 H 1.08994 * 109.47203 * 303.15704 * 1 2 3 32 32 H 1.08998 * 109.47086 * 63.15944 * 1 2 3 33 33 H 1.08990 * 109.49857 * 65.62225 * 4 2 1 34 34 H 1.09003 * 109.52194 * 305.54156 * 4 2 1 35 35 H 0.97003 * 119.99968 * 334.71938 * 7 5 4 36 36 H 0.96994 * 119.99892 * 180.02562 * 11 10 8 37 37 H 1.08998 * 109.49285 * 58.58910 * 16 5 4 38 38 H 1.09003 * 109.49555 * 178.68083 * 16 5 4 39 39 H 1.08992 * 109.58760 * 294.84740 * 17 16 5 40 40 H 1.09004 * 109.69589 * 174.49189 * 17 16 5 41 41 H 1.07996 * 119.94129 * 359.97438 * 22 21 19 42 42 H 1.07998 * 119.58297 * 180.29524 * 23 22 21 43 43 H 1.08002 * 120.52183 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0437 -0.7279 -1.2463 5 6 3.5676 -0.8465 -1.1711 6 1 4.0061 0.1487 -1.0989 7 7 4.0653 -1.5128 -2.3771 8 6 5.3498 -1.2953 -2.7989 9 1 5.9946 -0.6290 -2.2449 10 6 5.8233 -1.9310 -3.9384 11 7 5.0377 -2.7434 -4.6132 12 14 7.5757 -1.6347 -4.5134 13 1 8.2468 -0.6870 -3.5878 14 1 8.3163 -2.9217 -4.5276 15 1 7.5568 -1.0593 -5.8822 16 6 3.9570 -1.6656 0.0616 17 6 3.4651 -0.9483 1.3227 18 7 2.0226 -0.7009 1.1937 19 6 1.1674 -1.1095 2.1518 20 8 -0.0315 -1.0014 1.9828 21 6 1.6873 -1.6891 3.4084 22 6 2.9583 -1.3066 3.9011 23 6 3.4249 -1.8342 5.0507 24 7 2.6931 -2.7458 5.7470 25 7 2.9077 -3.4557 6.9373 26 7 1.8670 -4.1926 7.1302 27 7 1.0087 -4.0277 6.1876 28 6 1.4618 -3.1475 5.3050 29 6 0.9392 -2.6164 4.1138 30 1 -0.3633 -1.0262 0.0566 31 1 -0.3633 0.5620 0.8603 32 1 -0.3633 0.4640 -0.9169 33 1 1.7661 -0.1643 -2.1370 34 1 1.6031 -1.7237 -1.2939 35 1 3.4863 -2.1113 -2.8746 36 1 5.3687 -3.1880 -5.4092 37 1 3.4984 -2.6527 0.0022 38 1 5.0413 -1.7696 0.1017 39 1 3.9903 0.0005 1.4317 40 1 3.6521 -1.5722 2.1968 41 1 3.5532 -0.5878 3.3572 42 1 4.3935 -1.5328 5.4212 43 1 -0.0312 -2.9257 3.7546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044703352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:45 Heat of formation + Delta-G solvation = 163.245256 kcal Electronic energy + Delta-G solvation = -28134.502994 eV Core-core repulsion = 24219.762476 eV Total energy + Delta-G solvation = -3914.740518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.78074 -41.10179 -38.89278 -37.66698 -34.84624 -34.57202 -33.40452 -32.10731 -31.83229 -30.99097 -29.48177 -27.31529 -25.91082 -25.33438 -24.36970 -23.33937 -23.03233 -22.15373 -20.59933 -19.77018 -19.03956 -18.23966 -17.29182 -17.23594 -16.73353 -15.99940 -15.89304 -15.52739 -15.40527 -14.96020 -14.26597 -14.15184 -13.85827 -13.58990 -13.47947 -13.41839 -13.32115 -12.90049 -12.74372 -12.51781 -12.33182 -12.12114 -11.94528 -11.72895 -11.57352 -11.43100 -11.02877 -10.98797 -10.95576 -10.68572 -10.40800 -10.31053 -9.98296 -9.84155 -9.39219 -9.11980 -9.01155 -8.71152 -7.09966 -5.88319 -3.18358 -0.34628 -0.05920 1.26417 1.66812 2.12849 2.47280 2.87498 3.26332 3.34585 3.39709 3.42858 3.55303 3.79844 4.00056 4.36296 4.41176 4.47059 4.75057 4.75651 4.95172 4.97957 5.05454 5.09642 5.15302 5.24080 5.27767 5.33314 5.42803 5.47878 5.59976 5.71978 5.83056 5.84899 5.96224 6.08963 6.14869 6.26893 6.29462 6.37000 6.56227 6.71227 6.87276 7.14766 7.57677 7.80591 7.95050 8.29488 9.41061 9.97437 10.31509 11.34018 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015410 B = 0.002915 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.524282 B = 9603.631651 C =10795.669334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.148 3.852 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.723 5.723 8 C -0.243 4.243 9 H 0.071 0.929 10 C -0.011 4.011 11 N -0.930 5.930 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 C -0.153 4.153 17 C 0.082 3.918 18 N -0.588 5.588 19 C 0.559 3.441 20 O -0.516 6.516 21 C -0.064 4.064 22 C -0.125 4.125 23 C 0.104 3.896 24 N -0.295 5.295 25 N -0.109 5.109 26 N -0.009 5.009 27 N -0.314 5.314 28 C 0.239 3.761 29 C -0.029 4.029 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.187 0.813 42 H 0.189 0.811 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 6.333 17.085 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 H 0.095 0.905 4 C -0.176 4.176 5 C 0.068 3.932 6 H 0.067 0.933 7 N -0.363 5.363 8 C -0.374 4.374 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.578 5.578 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.194 4.194 17 C -0.041 4.041 18 N -0.321 5.321 19 C 0.345 3.655 20 O -0.394 6.394 21 C -0.076 4.076 22 C -0.148 4.148 23 C -0.023 4.023 24 N -0.075 5.075 25 N -0.092 5.092 26 N -0.002 5.002 27 N -0.175 5.175 28 C -0.015 4.015 29 C -0.053 4.053 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.204 0.796 42 H 0.206 0.794 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.732 5.524 18.296 19.953 hybrid contribution 1.260 0.347 -1.272 1.823 sum -4.472 5.871 17.025 18.555 Atomic orbital electron populations 1.22246 0.92577 1.03848 1.00881 1.21431 0.95637 0.95073 0.83303 0.90479 1.22324 0.97596 1.01164 0.96473 1.20165 0.90887 0.95017 0.87111 0.93309 1.42435 1.13062 1.54267 1.26576 1.19246 0.89084 1.22260 1.06822 0.91093 1.24765 0.98188 0.99659 0.98179 1.69668 1.35380 1.33109 1.19623 0.86144 0.84402 0.77317 0.78441 1.20532 1.21848 1.21818 1.22731 1.01974 1.00193 0.94499 1.22649 0.79426 1.01100 1.00889 1.48107 1.07656 1.56253 1.20060 1.17822 0.86263 0.78899 0.82514 1.90909 1.14718 1.54927 1.78808 1.20499 0.94123 0.96476 0.96475 1.21786 0.95955 1.02377 0.94671 1.21653 0.98623 0.90176 0.91817 1.49048 1.13954 1.27273 1.17222 1.82815 1.19344 1.09810 0.97249 1.77893 0.95342 1.11599 1.15323 1.75263 1.23121 1.17771 1.01334 1.22747 0.85259 0.95898 0.97643 1.20728 1.01387 0.94323 0.88857 0.90922 0.91315 0.93384 0.90304 0.91586 0.78202 0.93440 0.91995 0.90287 0.90491 0.88989 0.79577 0.79414 0.80423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 7.59 37.16 0.28 -1.33 16 2 C 0.15 1.69 3.49 -67.59 -0.24 1.46 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.14 -1.94 4.84 -26.61 -0.13 -2.07 16 5 C 0.18 2.96 2.73 -67.89 -0.19 2.77 16 6 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 7 N -0.72 -16.36 5.12 -53.39 -0.27 -16.63 16 8 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 11 N -0.93 -26.83 13.06 55.49 0.72 -26.11 16 12 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 C -0.15 -2.11 5.66 -26.61 -0.15 -2.26 16 17 C 0.08 0.73 4.71 -3.71 -0.02 0.72 16 18 N -0.59 -6.07 2.97 -166.33 -0.49 -6.56 16 19 C 0.56 5.91 7.39 -12.34 -0.09 5.82 16 20 O -0.52 -6.71 12.10 5.32 0.06 -6.65 16 21 C -0.06 -0.54 5.50 -104.62 -0.58 -1.11 16 22 C -0.12 -0.70 7.37 -39.52 -0.29 -1.00 16 23 C 0.10 0.62 11.19 -16.89 -0.19 0.43 16 24 N -0.29 -2.94 3.94 -12.43 -0.05 -2.99 16 25 N -0.11 -1.34 13.98 60.35 0.84 -0.50 16 26 N -0.01 -0.12 13.35 60.35 0.81 0.69 16 27 N -0.31 -4.20 12.27 31.03 0.38 -3.81 16 28 C 0.24 2.63 8.02 -156.36 -1.25 1.38 16 29 C -0.03 -0.27 9.70 -38.65 -0.38 -0.64 16 30 H 0.07 0.96 6.75 -51.93 -0.35 0.61 16 31 H 0.07 0.82 6.75 -51.93 -0.35 0.47 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.38 9.51 7.80 -40.82 -0.32 9.19 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 0.55 8.00 -51.93 -0.42 0.13 16 40 H 0.09 0.63 4.05 -51.93 -0.21 0.41 16 41 H 0.19 0.60 5.35 -52.49 -0.28 0.32 16 42 H 0.19 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.18 1.51 7.92 -52.49 -0.42 1.10 16 LS Contribution 349.04 15.07 5.26 5.26 Total: -1.00 -32.24 349.04 -6.48 -38.72 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.27 Total: 5.01 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -3.46 Total: -2.58 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 1.94 Total: -55.91 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: 0.06 Total: -6.65 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.24 -6.48 -38.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044703352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.967 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds