Wall clock time and date at job start Tue Mar 31 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08996 * 109.57960 * 2 1 4 4 C 1.53192 * 109.58672 * 239.71480 * 2 1 3 5 5 C 1.53042 * 109.30955 * 185.57962 * 4 2 1 6 6 H 1.08998 * 109.45410 * 301.35273 * 5 4 2 7 7 N 1.46496 * 109.45848 * 181.38412 * 5 4 2 8 8 C 1.36938 * 120.00189 * 154.99389 * 7 5 4 9 9 H 1.08002 * 119.99733 * 359.73108 * 8 7 5 10 10 C 1.38813 * 120.00420 * 179.72471 * 8 7 5 11 11 N 1.31622 * 119.99713 * 359.97438 * 10 8 7 12 12 Si 1.86791 * 120.00061 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47337 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47452 * 119.99933 * 12 10 8 15 15 H 1.48500 * 109.46845 * 239.99874 * 12 10 8 16 16 C 1.53038 * 109.53989 * 61.35885 * 5 4 2 17 17 C 1.53191 * 109.31391 * 298.63578 * 16 5 4 18 18 N 1.46925 * 108.77514 * 54.63990 * 17 16 5 19 19 C 1.34769 * 120.63364 * 126.36727 * 18 17 16 20 20 O 1.21556 * 120.00149 * 186.24236 * 19 18 17 21 21 C 1.47824 * 120.00138 * 6.24287 * 19 18 17 22 22 C 1.41579 * 120.37151 * 28.44481 * 21 19 18 23 23 C 1.34825 * 120.11073 * 179.71134 * 22 21 19 24 24 N 1.36058 * 120.82502 * 0.57113 * 23 22 21 25 25 N 1.40245 * 133.72571 * 179.70966 * 24 23 22 26 26 N 1.28967 * 107.02342 * 179.97438 * 25 24 23 27 27 N 1.28546 * 110.84052 * 359.97438 * 26 25 24 28 28 C 1.32621 * 110.18610 * 0.02562 * 27 26 25 29 29 C 1.38457 * 120.37273 * 208.71779 * 21 19 18 30 30 H 1.09005 * 109.46690 * 183.15749 * 1 2 3 31 31 H 1.08994 * 109.47203 * 303.15704 * 1 2 3 32 32 H 1.08998 * 109.47086 * 63.15944 * 1 2 3 33 33 H 1.08990 * 109.49857 * 65.62225 * 4 2 1 34 34 H 1.09003 * 109.52194 * 305.54156 * 4 2 1 35 35 H 0.97003 * 119.99968 * 334.71938 * 7 5 4 36 36 H 0.96994 * 119.99892 * 180.02562 * 11 10 8 37 37 H 1.08998 * 109.49285 * 58.58910 * 16 5 4 38 38 H 1.09003 * 109.49555 * 178.68083 * 16 5 4 39 39 H 1.08992 * 109.58760 * 294.84740 * 17 16 5 40 40 H 1.09004 * 109.69589 * 174.49189 * 17 16 5 41 41 H 1.07996 * 119.94129 * 359.97438 * 22 21 19 42 42 H 1.07998 * 119.58297 * 180.29524 * 23 22 21 43 43 H 1.08002 * 120.52183 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0437 -0.7279 -1.2463 5 6 3.5676 -0.8465 -1.1711 6 1 4.0061 0.1487 -1.0989 7 7 4.0653 -1.5128 -2.3771 8 6 5.3498 -1.2953 -2.7989 9 1 5.9946 -0.6290 -2.2449 10 6 5.8233 -1.9310 -3.9384 11 7 5.0377 -2.7434 -4.6132 12 14 7.5757 -1.6347 -4.5134 13 1 8.2468 -0.6870 -3.5878 14 1 8.3163 -2.9217 -4.5276 15 1 7.5568 -1.0593 -5.8822 16 6 3.9570 -1.6656 0.0616 17 6 3.4651 -0.9483 1.3227 18 7 2.0226 -0.7009 1.1937 19 6 1.1674 -1.1095 2.1518 20 8 -0.0315 -1.0014 1.9828 21 6 1.6873 -1.6891 3.4084 22 6 2.9583 -1.3066 3.9011 23 6 3.4249 -1.8342 5.0507 24 7 2.6931 -2.7458 5.7470 25 7 2.9077 -3.4557 6.9373 26 7 1.8670 -4.1926 7.1302 27 7 1.0087 -4.0277 6.1876 28 6 1.4618 -3.1475 5.3050 29 6 0.9392 -2.6164 4.1138 30 1 -0.3633 -1.0262 0.0566 31 1 -0.3633 0.5620 0.8603 32 1 -0.3633 0.4640 -0.9169 33 1 1.7661 -0.1643 -2.1370 34 1 1.6031 -1.7237 -1.2939 35 1 3.4863 -2.1113 -2.8746 36 1 5.3687 -3.1880 -5.4092 37 1 3.4984 -2.6527 0.0022 38 1 5.0413 -1.7696 0.1017 39 1 3.9903 0.0005 1.4317 40 1 3.6521 -1.5722 2.1968 41 1 3.5532 -0.5878 3.3572 42 1 4.3935 -1.5328 5.4212 43 1 -0.0312 -2.9257 3.7546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044703352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:44 Heat of formation + Delta-G solvation = 141.456346 kcal Electronic energy + Delta-G solvation = -28135.447832 eV Core-core repulsion = 24219.762476 eV Total energy + Delta-G solvation = -3915.685356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.58230 -41.97078 -39.68624 -38.73175 -36.25131 -35.41747 -34.33770 -33.67415 -32.67831 -31.72828 -30.99266 -28.46345 -26.71616 -26.16737 -25.84722 -24.44291 -23.95188 -23.10565 -21.74608 -20.80635 -19.81119 -19.15360 -18.91519 -18.07844 -17.52293 -16.88754 -16.81037 -16.56460 -16.42701 -16.05224 -15.47909 -15.45218 -15.02809 -14.70160 -14.56506 -14.36992 -14.27235 -13.89125 -13.77815 -13.48633 -13.17476 -13.10802 -13.03416 -12.89367 -12.78939 -12.58154 -12.51262 -12.27869 -12.08252 -11.98503 -11.94030 -11.68059 -11.33468 -11.19020 -10.82326 -10.31022 -9.82964 -9.61588 -8.96470 -7.90428 -5.18482 -1.05108 -0.75974 0.58447 0.88607 1.32773 1.50638 1.51288 1.60538 1.63974 2.13273 2.50853 2.59475 2.82592 3.13380 3.39121 3.44168 3.66892 3.76806 3.79881 3.96704 4.04179 4.04482 4.13356 4.27705 4.29828 4.39135 4.49925 4.60956 4.63503 4.66072 4.74391 4.79081 4.81099 4.89531 5.04965 5.12121 5.19826 5.21772 5.30406 5.48421 5.55407 5.59792 5.71043 6.29490 6.32086 6.95772 7.09296 7.37659 8.15047 8.35793 9.33594 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015410 B = 0.002915 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.524282 B = 9603.631651 C =10795.669334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.155 3.845 3 H 0.102 0.898 4 C -0.127 4.127 5 C 0.171 3.829 6 H 0.058 0.942 7 N -0.740 5.740 8 C -0.227 4.227 9 H 0.085 0.915 10 C -0.081 4.081 11 N -0.974 5.974 12 Si 0.967 3.033 13 H -0.259 1.259 14 H -0.300 1.300 15 H -0.300 1.300 16 C -0.145 4.145 17 C 0.087 3.913 18 N -0.588 5.588 19 C 0.560 3.440 20 O -0.543 6.543 21 C -0.055 4.055 22 C -0.111 4.111 23 C 0.113 3.887 24 N -0.293 5.293 25 N -0.122 5.122 26 N -0.032 5.032 27 N -0.345 5.345 28 C 0.229 3.771 29 C -0.039 4.039 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.368 0.632 36 H 0.247 0.753 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.224 0.776 42 H 0.233 0.767 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 8.919 18.690 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.120 0.880 4 C -0.166 4.166 5 C 0.063 3.937 6 H 0.076 0.924 7 N -0.379 5.379 8 C -0.359 4.359 9 H 0.103 0.897 10 C -0.273 4.273 11 N -0.625 5.625 12 Si 0.797 3.203 13 H -0.183 1.183 14 H -0.228 1.228 15 H -0.228 1.228 16 C -0.186 4.186 17 C -0.034 4.034 18 N -0.319 5.319 19 C 0.347 3.653 20 O -0.422 6.422 21 C -0.066 4.066 22 C -0.133 4.133 23 C -0.013 4.013 24 N -0.073 5.073 25 N -0.105 5.105 26 N -0.025 5.025 27 N -0.207 5.207 28 C -0.024 4.024 29 C -0.063 4.063 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.199 0.801 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.241 0.759 42 H 0.249 0.751 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.837 8.150 19.972 21.910 hybrid contribution 0.626 -0.351 -1.810 1.947 sum -3.211 7.800 18.162 20.025 Atomic orbital electron populations 1.22126 0.92839 1.02555 1.01213 1.21340 0.95319 0.95783 0.82297 0.88038 1.22190 0.96034 1.00433 0.97968 1.20486 0.92090 0.95140 0.85996 0.92406 1.42724 1.12175 1.54432 1.28570 1.19690 0.90063 1.20348 1.05787 0.89734 1.25533 1.01781 1.00725 0.99267 1.69829 1.37131 1.35277 1.20300 0.85155 0.80479 0.76947 0.77707 1.18268 1.22787 1.22821 1.22499 1.01472 0.99108 0.95492 1.22816 0.78470 1.03009 0.99107 1.48113 1.08283 1.55967 1.19573 1.18025 0.85881 0.78328 0.83038 1.90914 1.16024 1.55785 1.79448 1.20400 0.95158 0.95808 0.95278 1.22154 0.94620 1.02147 0.94422 1.22550 0.99565 0.88100 0.91070 1.49207 1.13932 1.27456 1.16736 1.82688 1.19158 1.10328 0.98362 1.77848 0.95923 1.12618 1.16083 1.75143 1.24056 1.19342 1.02179 1.22765 0.85880 0.95962 0.97785 1.20703 1.01774 0.95138 0.88679 0.93031 0.91244 0.92769 0.91212 0.93536 0.80087 0.94388 0.94228 0.90929 0.86653 0.86105 0.75945 0.75066 0.80655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 7.59 71.99 0.55 -2.30 16 2 C 0.16 3.13 3.49 44.98 0.16 3.29 16 3 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.13 -3.47 4.84 30.67 0.15 -3.33 16 5 C 0.17 5.34 2.73 45.02 0.12 5.46 16 6 H 0.06 1.73 8.08 -2.39 -0.02 1.71 16 7 N -0.74 -33.32 5.12 -322.82 -1.65 -34.97 16 8 C -0.23 -11.34 9.93 84.03 0.83 -10.51 16 9 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 10 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 11 N -0.97 -57.64 13.06 21.65 0.28 -57.35 16 12 Si 0.97 43.48 29.55 68.60 2.03 45.51 16 13 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 14 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 15 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 16 C -0.14 -3.60 5.66 30.67 0.17 -3.43 16 17 C 0.09 1.13 4.71 86.36 0.41 1.54 16 18 N -0.59 -10.02 2.97 -798.43 -2.37 -12.39 16 19 C 0.56 10.30 7.39 86.78 0.64 10.95 16 20 O -0.54 -13.36 12.10 -3.89 -0.05 -13.41 16 21 C -0.05 -0.74 5.50 -19.86 -0.11 -0.85 16 22 C -0.11 -0.66 7.37 22.31 0.16 -0.50 16 23 C 0.11 0.81 11.19 83.25 0.93 1.74 16 24 N -0.29 -5.17 3.94 -193.23 -0.76 -5.93 16 25 N -0.12 -2.87 13.98 37.02 0.52 -2.35 16 26 N -0.03 -0.88 13.35 37.02 0.49 -0.39 16 27 N -0.35 -9.35 12.27 -55.73 -0.68 -10.03 16 28 C 0.23 4.84 8.02 134.05 1.07 5.91 16 29 C -0.04 -0.67 9.70 22.88 0.22 -0.45 16 30 H 0.05 1.35 6.75 -2.38 -0.02 1.33 16 31 H 0.07 1.54 6.75 -2.39 -0.02 1.52 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.37 18.69 7.80 -92.71 -0.72 17.97 16 36 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 37 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.12 0.78 8.00 -2.39 -0.02 0.76 16 40 H 0.12 0.92 4.05 -2.39 -0.01 0.91 16 41 H 0.22 -0.24 5.35 -2.91 -0.02 -0.25 16 42 H 0.23 -0.40 8.06 -2.91 -0.02 -0.42 16 43 H 0.18 3.01 7.92 -2.91 -0.02 2.99 16 Total: -1.00 -74.50 349.04 3.93 -70.57 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.35 Total: 17.16 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.78 Total: 3.59 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -4.18 Total: -123.41 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.05 Total: -13.41 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -74.50 3.93 -70.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044703352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.023 kcal (2) G-P(sol) polarization free energy of solvation -74.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds