Wall clock time and date at job start Tue Mar 31 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.70169 * 2 1 4 4 C 1.53194 * 109.58816 * 239.64598 * 2 1 3 5 5 C 1.53040 * 109.31318 * 185.57426 * 4 2 1 6 6 H 1.09000 * 109.46354 * 301.34706 * 5 4 2 7 7 N 1.46506 * 109.45988 * 181.38357 * 5 4 2 8 8 C 1.36933 * 120.00046 * 154.93190 * 7 5 4 9 9 H 1.08010 * 119.99922 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00267 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00097 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99962 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47248 * 89.99612 * 12 10 8 14 14 H 1.48499 * 109.47151 * 210.00028 * 12 10 8 15 15 H 1.48506 * 109.46923 * 329.99863 * 12 10 8 16 16 C 1.53038 * 109.53607 * 61.36737 * 5 4 2 17 17 C 1.53188 * 109.31398 * 298.63159 * 16 5 4 18 18 N 1.46924 * 109.58877 * 120.35536 * 2 1 3 19 19 C 1.34770 * 120.63092 * 353.41693 * 18 2 1 20 20 O 1.21523 * 120.00125 * 354.48690 * 19 18 2 21 21 C 1.48128 * 120.00206 * 174.48382 * 19 18 2 22 22 N 1.33468 * 125.32527 * 7.09998 * 21 19 18 23 23 C 1.32493 * 109.75739 * 179.97438 * 22 21 19 24 24 N 1.33991 * 132.34402 * 180.02562 * 23 22 21 25 25 C 1.31259 * 120.88195 * 179.97438 * 24 23 22 26 26 C 1.40171 * 120.35537 * 359.97438 * 25 24 23 27 27 C 1.35681 * 119.27467 * 0.02562 * 26 25 24 28 28 N 1.36177 * 119.02683 * 359.97438 * 27 26 25 29 29 N 1.31993 * 125.32777 * 186.79944 * 21 19 18 30 30 H 1.08996 * 109.46927 * 306.78246 * 1 2 3 31 31 H 1.09003 * 109.46875 * 66.78828 * 1 2 3 32 32 H 1.08997 * 109.46707 * 186.78760 * 1 2 3 33 33 H 1.08995 * 109.49781 * 305.53015 * 4 2 1 34 34 H 1.09005 * 109.49810 * 65.59166 * 4 2 1 35 35 H 0.97001 * 119.99698 * 334.94103 * 7 5 4 36 36 H 0.97001 * 120.00070 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.49767 * 178.68315 * 16 5 4 38 38 H 1.08994 * 109.50221 * 58.58549 * 16 5 4 39 39 H 1.08995 * 109.58818 * 174.42450 * 17 16 5 40 40 H 1.09003 * 109.58745 * 294.71069 * 17 16 5 41 41 H 1.07999 * 119.82201 * 179.97438 * 25 24 23 42 42 H 1.07994 * 120.36347 * 179.97438 * 26 25 24 43 43 H 1.07993 * 120.48947 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5675 -0.8479 -1.1702 6 1 4.0062 0.1475 -1.0993 7 7 4.0653 -1.5157 -2.3755 8 6 5.3493 -1.2975 -2.7983 9 1 5.9950 -0.6328 -2.2435 10 6 5.8207 -1.9298 -3.9406 11 7 7.0551 -1.7205 -4.3467 12 14 4.7033 -3.0777 -4.9013 13 1 3.9684 -2.3038 -5.9338 14 1 5.5209 -4.1286 -5.5590 15 1 3.7324 -3.7135 -3.9748 16 6 3.9569 -1.6656 0.0634 17 6 3.4651 -0.9469 1.3237 18 7 2.0226 -0.6995 1.1944 19 6 1.1675 -1.1069 2.1531 20 8 -0.0089 -0.8098 2.0843 21 6 1.6614 -1.9169 3.2908 22 7 2.9429 -2.1902 3.5446 23 6 3.0341 -2.9362 4.6358 24 7 4.0821 -3.4592 5.2865 25 6 3.9111 -4.1792 6.3706 26 6 2.6221 -4.4139 6.8690 27 6 1.5534 -3.8892 6.2182 28 7 1.7624 -3.1465 5.0961 29 7 0.9035 -2.4765 4.2152 30 1 -0.3633 0.6153 0.8230 31 1 -0.3633 0.4050 -0.9445 32 1 -0.3632 -1.0205 0.1215 33 1 1.6030 -1.7252 -1.2914 34 1 1.7655 -0.1671 -2.1369 35 1 3.4852 -2.1122 -2.8740 36 1 7.3844 -2.1620 -5.1451 37 1 5.0413 -1.7694 0.1036 38 1 3.4984 -2.6527 0.0052 39 1 3.6519 -1.5717 2.1970 40 1 3.9921 0.0009 1.4330 41 1 4.7680 -4.5929 6.8813 42 1 2.4812 -5.0066 7.7607 43 1 0.5517 -4.0581 6.5847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044786914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:01 Heat of formation + Delta-G solvation = 159.234951 kcal Electronic energy + Delta-G solvation = -28245.874614 eV Core-core repulsion = 24330.960196 eV Total energy + Delta-G solvation = -3914.914418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.38581 -40.54736 -39.06688 -37.46712 -35.17498 -34.62346 -32.93860 -31.92085 -31.58680 -31.15149 -29.76632 -27.24797 -26.06384 -24.94903 -24.32926 -23.44637 -22.54320 -21.60662 -20.20363 -19.51500 -18.82925 -18.41868 -17.54519 -17.19152 -17.10535 -16.27685 -15.97410 -15.22398 -15.05431 -14.80820 -14.20565 -14.09538 -13.97864 -13.69534 -13.53119 -13.27769 -13.14069 -12.83466 -12.56695 -12.52076 -12.23595 -12.12448 -11.84506 -11.57390 -10.98984 -10.96240 -10.75764 -10.65024 -10.54612 -10.27765 -10.21951 -9.95418 -9.70139 -9.56015 -9.38710 -9.30313 -8.82752 -8.49637 -7.22232 -5.73442 -3.08539 -0.16211 0.12400 1.26377 1.46244 2.50859 2.74431 2.89241 3.17635 3.40565 3.44017 3.48029 3.59989 3.72952 4.03423 4.27501 4.52923 4.62609 4.72031 5.00119 5.04185 5.19647 5.30643 5.32827 5.46789 5.48683 5.57913 5.63178 5.63731 5.69578 5.84820 5.95421 6.06377 6.09581 6.30802 6.37749 6.42450 6.45742 6.56822 6.74214 6.89658 6.95839 7.08288 7.23203 7.44170 8.01401 8.03180 8.45849 9.24361 9.97210 10.17423 11.45004 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014100 B = 0.003253 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.302085 B = 8605.541247 C = 9957.431079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.147 3.853 3 H 0.081 0.919 4 C -0.138 4.138 5 C 0.181 3.819 6 H 0.058 0.942 7 N -0.749 5.749 8 C -0.240 4.240 9 H 0.091 0.909 10 C 0.004 3.996 11 N -0.935 5.935 12 Si 0.883 3.117 13 H -0.285 1.285 14 H -0.292 1.292 15 H -0.278 1.278 16 C -0.144 4.144 17 C 0.056 3.944 18 N -0.571 5.571 19 C 0.604 3.396 20 O -0.510 6.510 21 C 0.250 3.750 22 N -0.490 5.490 23 C 0.440 3.560 24 N -0.447 5.447 25 C 0.210 3.790 26 C -0.219 4.219 27 C 0.172 3.828 28 N -0.328 5.328 29 N -0.270 5.270 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.152 0.848 40 H 0.067 0.933 41 H 0.194 0.806 42 H 0.177 0.823 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.688 -4.732 26.546 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.045 3.955 3 H 0.099 0.901 4 C -0.177 4.177 5 C 0.071 3.929 6 H 0.076 0.924 7 N -0.390 5.390 8 C -0.370 4.370 9 H 0.109 0.891 10 C -0.192 4.192 11 N -0.583 5.583 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.185 4.185 17 C -0.066 4.066 18 N -0.304 5.304 19 C 0.386 3.614 20 O -0.384 6.384 21 C -0.033 4.033 22 N -0.224 5.224 23 C 0.081 3.919 24 N -0.161 5.161 25 C 0.023 3.977 26 C -0.244 4.244 27 C 0.035 3.965 28 N -0.109 5.109 29 N -0.104 5.104 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.168 0.832 40 H 0.086 0.914 41 H 0.211 0.789 42 H 0.195 0.805 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.859 -3.901 25.578 28.462 hybrid contribution -1.107 -1.387 -0.241 1.791 sum -12.967 -5.289 25.337 28.949 Atomic orbital electron populations 1.22234 0.92776 1.03665 1.01152 1.21435 0.95486 0.95504 0.83101 0.90121 1.22346 0.97827 1.00932 0.96620 1.20215 0.90548 0.95576 0.86562 0.92440 1.42796 1.13198 1.54812 1.28225 1.19085 0.87732 1.23063 1.07123 0.89112 1.24658 0.96101 1.00148 0.98275 1.69701 1.15102 1.47343 1.26138 0.86565 0.80366 0.81317 0.80370 1.21122 1.21827 1.20413 1.22549 1.02177 0.99412 0.94380 1.23262 0.77214 1.02664 1.03470 1.48079 1.08614 1.54864 1.18793 1.16494 0.85320 0.79466 0.80150 1.90885 1.16100 1.56097 1.75274 1.24548 0.86657 0.96281 0.95854 1.70669 1.17715 1.20763 1.13262 1.23131 0.81194 0.95097 0.92459 1.68149 1.27243 1.11685 1.09022 1.23713 0.97901 0.87775 0.88313 1.22043 0.92099 1.05841 1.04422 1.22258 1.02998 0.88163 0.83072 1.49069 1.09273 1.33317 1.19201 1.78937 1.11455 1.16253 1.03718 0.90640 0.93114 0.91665 0.91868 0.90220 0.80735 0.93122 0.90111 0.92747 0.83228 0.91434 0.78919 0.80521 0.79731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.61 37.16 0.28 -1.69 16 2 C 0.15 2.16 3.49 -67.60 -0.24 1.92 16 3 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 4 C -0.14 -2.26 4.84 -26.61 -0.13 -2.39 16 5 C 0.18 3.50 2.73 -67.89 -0.19 3.32 16 6 H 0.06 1.14 8.08 -51.93 -0.42 0.73 16 7 N -0.75 -17.87 4.92 -53.38 -0.26 -18.13 16 8 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 9 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 10 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 11 N -0.93 -29.59 13.97 55.49 0.78 -28.81 16 12 Si 0.88 22.49 27.74 -169.99 -4.71 17.77 16 13 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 15 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 16 C -0.14 -2.63 5.66 -26.61 -0.15 -2.78 16 17 C 0.06 0.88 6.32 -3.71 -0.02 0.86 16 18 N -0.57 -8.84 2.97 -166.22 -0.49 -9.34 16 19 C 0.60 9.77 7.52 -12.20 -0.09 9.68 16 20 O -0.51 -8.83 12.64 5.35 0.07 -8.76 16 21 C 0.25 3.88 7.71 -156.78 -1.21 2.67 16 22 N -0.49 -7.38 7.48 -12.23 -0.09 -7.47 16 23 C 0.44 5.62 8.99 -323.05 -2.90 2.72 16 24 N -0.45 -4.54 10.48 -13.79 -0.14 -4.68 16 25 C 0.21 0.92 11.27 -17.07 -0.19 0.72 16 26 C -0.22 -0.50 10.06 -39.77 -0.40 -0.90 16 27 C 0.17 0.90 11.32 -16.54 -0.19 0.72 16 28 N -0.33 -3.62 3.91 -13.80 -0.05 -3.67 16 29 N -0.27 -3.88 12.78 32.02 0.41 -3.47 16 30 H 0.07 1.10 6.64 -51.93 -0.35 0.75 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.00 6.85 -51.93 -0.36 0.65 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.36 8.56 5.66 -40.82 -0.23 8.32 16 36 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.15 2.40 3.60 -83.94 -0.30 2.10 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.19 0.00 8.06 -52.49 -0.42 -0.42 16 42 H 0.18 -0.38 8.06 -52.49 -0.42 -0.80 16 43 H 0.19 0.35 8.06 -52.49 -0.42 -0.08 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -37.53 349.42 -10.39 -47.92 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.47 Total: 5.46 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: -5.68 Total: 7.91 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: 0.14 Total: -75.57 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.07 Total: -8.76 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.53 -10.39 -47.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044786914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.157 kcal (2) G-P(sol) polarization free energy of solvation -37.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds