Wall clock time and date at job start Tue Mar 31 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.70244 * 2 1 4 4 C 1.53188 * 109.58797 * 239.64579 * 2 1 3 5 5 C 1.53040 * 109.31446 * 185.57952 * 4 2 1 6 6 H 1.08998 * 109.46443 * 181.37101 * 5 4 2 7 7 N 1.46507 * 109.45814 * 301.34144 * 5 4 2 8 8 C 1.36939 * 119.99878 * 205.00005 * 7 5 4 9 9 H 1.07997 * 119.99990 * 359.97438 * 8 7 5 10 10 C 1.38806 * 119.99991 * 180.02562 * 8 7 5 11 11 N 1.31627 * 119.99792 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00394 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46874 * 59.99680 * 12 10 8 14 14 H 1.48496 * 109.47265 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.46765 * 299.99734 * 12 10 8 16 16 C 1.53041 * 109.54258 * 61.36036 * 5 4 2 17 17 C 1.53191 * 109.31012 * 298.64215 * 16 5 4 18 18 N 1.46918 * 108.77839 * 54.63146 * 17 16 5 19 19 C 1.34781 * 120.63372 * 126.36812 * 18 17 16 20 20 O 1.21519 * 119.99979 * 174.00882 * 19 18 17 21 21 C 1.48120 * 119.99747 * 354.01302 * 19 18 17 22 22 N 1.33479 * 125.32673 * 5.80122 * 21 19 18 23 23 C 1.32496 * 109.75234 * 179.82201 * 22 21 19 24 24 N 1.33992 * 132.34236 * 180.09933 * 23 22 21 25 25 C 1.31263 * 120.88078 * 180.36113 * 24 23 22 26 26 C 1.40165 * 120.35569 * 0.02562 * 25 24 23 27 27 C 1.35680 * 119.27297 * 359.97438 * 26 25 24 28 28 N 1.36161 * 119.02974 * 0.02562 * 27 26 25 29 29 N 1.31990 * 125.32354 * 186.09909 * 21 19 18 30 30 H 1.08993 * 109.47038 * 305.77734 * 1 2 3 31 31 H 1.09003 * 109.46793 * 65.77793 * 1 2 3 32 32 H 1.09000 * 109.46801 * 185.77308 * 1 2 3 33 33 H 1.08998 * 109.49768 * 305.52566 * 4 2 1 34 34 H 1.09003 * 109.50316 * 65.59447 * 4 2 1 35 35 H 0.96989 * 119.99738 * 25.00440 * 7 5 4 36 36 H 0.97002 * 120.00080 * 179.97438 * 11 10 8 37 37 H 1.08991 * 109.50101 * 178.68160 * 16 5 4 38 38 H 1.09007 * 109.49000 * 58.58795 * 16 5 4 39 39 H 1.09000 * 109.58633 * 294.84020 * 17 16 5 40 40 H 1.09005 * 109.58502 * 174.41943 * 17 16 5 41 41 H 1.07999 * 119.81735 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.36368 * 180.02562 * 26 25 24 43 43 H 1.08008 * 120.48401 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 1 3.9378 -1.3450 -2.0667 7 7 4.1571 0.4899 -1.0749 8 6 5.4414 0.7038 -1.4990 9 1 6.0199 -0.1137 -1.9032 10 6 6.0002 1.9712 -1.4083 11 7 5.2953 2.9675 -0.9152 12 14 7.7525 2.2630 -1.9861 13 1 7.8609 1.9254 -3.4282 14 1 8.1091 3.6903 -1.7842 15 1 8.6802 1.4054 -1.2058 16 6 3.9570 -1.6656 0.0635 17 6 3.4650 -0.9469 1.3237 18 7 2.0226 -0.6995 1.1945 19 6 1.1673 -1.1070 2.1532 20 8 -0.0073 -0.8022 2.0890 21 6 1.6592 -1.9261 3.2850 22 7 2.9377 -2.2290 3.5202 23 6 3.0280 -2.9721 4.6135 24 7 4.0733 -3.5162 5.2511 25 6 3.9012 -4.2336 6.3368 26 6 2.6140 -4.4442 6.8500 27 6 1.5481 -3.8980 6.2126 28 7 1.7580 -3.1587 5.0886 29 7 0.9013 -2.4753 4.2156 30 1 -0.3633 0.6008 0.8337 31 1 -0.3633 0.4216 -0.9372 32 1 -0.3633 -1.0225 0.1034 33 1 1.6030 -1.7253 -1.2913 34 1 1.7656 -0.1671 -2.1369 35 1 3.6377 1.2239 -0.7115 36 1 5.6859 3.8531 -0.8515 37 1 5.0412 -1.7696 0.1037 38 1 3.4983 -2.6528 0.0052 39 1 3.9903 0.0021 1.4317 40 1 3.6518 -1.5717 2.1972 41 1 4.7560 -4.6645 6.8368 42 1 2.4723 -5.0341 7.7435 43 1 0.5476 -4.0482 6.5907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044786915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:04 Heat of formation + Delta-G solvation = 158.633632 kcal Electronic energy + Delta-G solvation = -28646.290478 eV Core-core repulsion = 24731.349985 eV Total energy + Delta-G solvation = -3914.940493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.26584 -40.36349 -38.95617 -37.37034 -35.05378 -34.15618 -32.74037 -31.84827 -31.44436 -31.01925 -29.00340 -27.08137 -25.92003 -24.82622 -24.13259 -23.52338 -22.98559 -21.65657 -20.10835 -18.92968 -18.55783 -18.14159 -17.13568 -17.03784 -16.95905 -16.11089 -15.77222 -15.15354 -14.95842 -14.50649 -14.03323 -13.93386 -13.76408 -13.70649 -13.44750 -13.15730 -13.04931 -12.78579 -12.50581 -12.38310 -11.97575 -11.91042 -11.53310 -11.15230 -10.89936 -10.75083 -10.69276 -10.48812 -10.45079 -10.22279 -10.10180 -9.91785 -9.57770 -9.49437 -9.26875 -9.07638 -8.76749 -8.14050 -6.89688 -5.71072 -2.99422 -0.06484 0.22924 1.38178 1.61161 2.67559 2.86751 3.04481 3.34942 3.48170 3.52729 3.53445 3.74192 3.81189 4.20228 4.37421 4.62781 4.64679 4.81249 5.24904 5.29582 5.34814 5.49491 5.54390 5.59242 5.70015 5.72087 5.74163 5.90104 5.92199 6.06289 6.11534 6.24888 6.35756 6.49527 6.57240 6.64910 6.74812 6.82198 6.88945 6.95596 7.08968 7.21613 7.40348 7.70238 7.75644 8.24513 8.47540 9.58675 10.15997 10.51051 11.51523 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.003533 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.611007 B = 7923.243545 C = 9363.978172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.144 3.856 3 H 0.088 0.912 4 C -0.132 4.132 5 C 0.171 3.829 6 H 0.050 0.950 7 N -0.721 5.721 8 C -0.236 4.236 9 H 0.069 0.931 10 C -0.013 4.013 11 N -0.934 5.934 12 Si 0.905 3.095 13 H -0.287 1.287 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.143 4.143 17 C 0.064 3.936 18 N -0.564 5.564 19 C 0.600 3.400 20 O -0.515 6.515 21 C 0.253 3.747 22 N -0.486 5.486 23 C 0.438 3.562 24 N -0.447 5.447 25 C 0.208 3.792 26 C -0.221 4.221 27 C 0.172 3.828 28 N -0.329 5.329 29 N -0.272 5.272 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.145 0.855 41 H 0.193 0.807 42 H 0.176 0.824 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 -17.521 16.844 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.042 3.958 3 H 0.105 0.895 4 C -0.171 4.171 5 C 0.061 3.939 6 H 0.068 0.932 7 N -0.364 5.364 8 C -0.368 4.368 9 H 0.087 0.913 10 C -0.209 4.209 11 N -0.582 5.582 12 Si 0.737 3.263 13 H -0.214 1.214 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.184 4.184 17 C -0.058 4.058 18 N -0.295 5.295 19 C 0.381 3.619 20 O -0.389 6.389 21 C -0.030 4.030 22 N -0.220 5.220 23 C 0.079 3.921 24 N -0.161 5.161 25 C 0.021 3.979 26 C -0.246 4.246 27 C 0.035 3.965 28 N -0.110 5.110 29 N -0.105 5.105 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.161 0.839 41 H 0.210 0.790 42 H 0.194 0.806 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.942 -16.764 15.834 24.389 hybrid contribution 0.430 0.104 0.442 0.626 sum -7.512 -16.660 16.276 24.472 Atomic orbital electron populations 1.22241 0.93177 1.03127 1.01218 1.21409 0.94890 0.96346 0.83124 0.89451 1.22244 0.97671 1.00171 0.97004 1.20247 0.90220 0.88208 0.95262 0.93205 1.42482 1.13759 1.04675 1.75459 1.19192 0.89821 0.94080 1.33659 0.91261 1.24710 0.98198 0.95935 1.02048 1.69648 1.36512 1.00586 1.51457 0.86296 0.84915 0.76758 0.78382 1.21412 1.21835 1.21311 1.22438 1.01405 0.97606 0.96918 1.23127 0.76941 1.03665 1.02046 1.48071 1.08733 1.54063 1.18674 1.16523 0.85378 0.79770 0.80234 1.90868 1.16350 1.56458 1.75242 1.24650 0.86591 0.96000 0.95777 1.70799 1.17830 1.20040 1.13351 1.23199 0.81241 0.95310 0.92375 1.68140 1.27322 1.11185 1.09440 1.23683 0.97784 0.88143 0.88316 1.22013 0.92193 1.05927 1.04497 1.22240 1.02900 0.88131 0.83208 1.49106 1.09426 1.33271 1.19151 1.78942 1.11468 1.15991 1.04101 0.90539 0.93314 0.92092 0.92075 0.90463 0.78198 0.93538 0.90813 0.93764 0.90006 0.83862 0.79042 0.80631 0.79810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 7.61 37.16 0.28 -2.02 16 2 C 0.14 2.59 3.20 -67.60 -0.22 2.37 16 3 H 0.09 1.74 6.64 -51.93 -0.34 1.39 16 4 C -0.13 -2.30 5.07 -26.61 -0.13 -2.43 16 5 C 0.17 3.43 3.10 -67.88 -0.21 3.22 16 6 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 7 N -0.72 -17.72 4.31 -53.38 -0.23 -17.95 16 8 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 9 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 10 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 11 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 12 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 C -0.14 -2.67 5.78 -26.61 -0.15 -2.83 16 17 C 0.06 1.21 6.07 -3.72 -0.02 1.18 16 18 N -0.56 -10.31 2.97 -166.23 -0.49 -10.80 16 19 C 0.60 11.00 7.52 -12.20 -0.09 10.91 16 20 O -0.51 -9.97 12.65 5.35 0.07 -9.90 16 21 C 0.25 4.35 7.72 -156.78 -1.21 3.14 16 22 N -0.49 -8.13 7.48 -12.23 -0.09 -8.22 16 23 C 0.44 6.12 8.99 -323.04 -2.90 3.22 16 24 N -0.45 -4.98 10.48 -13.79 -0.14 -5.13 16 25 C 0.21 1.07 11.27 -17.07 -0.19 0.88 16 26 C -0.22 -0.68 10.06 -39.77 -0.40 -1.08 16 27 C 0.17 1.05 11.32 -16.55 -0.19 0.87 16 28 N -0.33 -3.98 3.91 -13.80 -0.05 -4.03 16 29 N -0.27 -4.25 12.78 32.02 0.41 -3.84 16 30 H 0.08 1.34 6.56 -51.93 -0.34 1.00 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.02 6.94 -51.93 -0.36 0.66 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.38 10.01 6.06 -40.82 -0.25 9.77 16 36 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 37 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.04 0.76 8.14 -51.92 -0.42 0.33 16 39 H 0.08 1.79 7.74 -51.93 -0.40 1.39 16 40 H 0.15 2.67 3.58 -84.54 -0.30 2.36 16 41 H 0.19 0.14 8.06 -52.49 -0.42 -0.29 16 42 H 0.18 -0.26 8.06 -52.49 -0.42 -0.68 16 43 H 0.18 0.49 8.06 -52.48 -0.42 0.07 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -35.84 348.25 -10.62 -46.46 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.34 Total: 7.75 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: -5.68 Total: 10.35 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: 0.12 Total: -77.38 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.84 -10.62 -46.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044786915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.091 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds