Wall clock time and date at job start Tue Mar 31 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.58345 * 2 1 4 4 C 1.53188 * 109.58632 * 120.28290 * 2 1 3 5 5 C 1.53043 * 109.33834 * 174.40551 * 4 2 1 6 6 H 1.09002 * 109.45990 * 58.67731 * 5 4 2 7 7 N 1.46498 * 109.45962 * 178.63244 * 5 4 2 8 8 C 1.36943 * 120.00249 * 205.00322 * 7 5 4 9 9 H 1.08004 * 119.99277 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00315 * 180.02562 * 8 7 5 11 11 N 1.31613 * 119.99825 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99798 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47235 * 59.99800 * 12 10 8 14 14 H 1.48509 * 109.46964 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47269 * 299.99309 * 12 10 8 16 16 C 1.53034 * 109.54037 * 298.68284 * 5 4 2 17 17 C 1.53198 * 109.33651 * 61.31706 * 16 5 4 18 18 N 1.46921 * 108.77430 * 305.37838 * 17 16 5 19 19 C 1.34780 * 120.62995 * 233.63224 * 18 17 16 20 20 O 1.21530 * 119.99658 * 186.81460 * 19 18 17 21 21 C 1.48128 * 120.00244 * 6.81060 * 19 18 17 22 22 N 1.33474 * 125.32096 * 7.49755 * 21 19 18 23 23 C 1.32496 * 109.75183 * 179.81909 * 22 21 19 24 24 N 1.33990 * 132.34325 * 180.10512 * 23 22 21 25 25 C 1.31260 * 120.87624 * 180.36573 * 24 23 22 26 26 C 1.40162 * 120.36315 * 359.97438 * 25 24 23 27 27 C 1.35680 * 119.27087 * 359.97438 * 26 25 24 28 28 N 1.36171 * 119.02945 * 0.02562 * 27 26 25 29 29 N 1.31984 * 125.32479 * 187.80408 * 21 19 18 30 30 H 1.09003 * 109.47039 * 292.45478 * 1 2 3 31 31 H 1.08994 * 109.47415 * 52.45684 * 1 2 3 32 32 H 1.09002 * 109.47065 * 172.45671 * 1 2 3 33 33 H 1.09003 * 109.50343 * 294.37462 * 4 2 1 34 34 H 1.09006 * 109.50054 * 54.44357 * 4 2 1 35 35 H 0.97006 * 120.00572 * 24.99844 * 7 5 4 36 36 H 0.97000 * 120.00109 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.47537 * 301.36510 * 16 5 4 38 38 H 1.08996 * 109.49852 * 181.28397 * 16 5 4 39 39 H 1.09006 * 109.58434 * 185.59027 * 17 16 5 40 40 H 1.08999 * 109.58590 * 65.17045 * 17 16 5 41 41 H 1.08003 * 119.81635 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.37125 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.48789 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5675 -0.8472 1.1716 6 1 4.0066 0.1479 1.0999 7 7 4.0645 -1.5139 2.3777 8 6 5.3490 -1.2970 2.8000 9 1 5.9957 -0.6347 2.2435 10 6 5.8201 -1.9290 3.9425 11 7 5.0321 -2.7365 4.6202 12 14 7.5725 -1.6336 4.5180 13 1 7.7631 -0.1887 4.8029 14 1 7.8271 -2.4189 5.7525 15 1 8.5204 -2.0582 3.4565 16 6 3.9569 -1.6658 -0.0614 17 6 3.4650 -0.9485 -1.3225 18 7 2.0226 -0.7010 -1.1936 19 6 1.1673 -1.1097 -2.1518 20 8 -0.0045 -0.7923 -2.0959 21 6 1.6557 -1.9455 -3.2730 22 7 2.8785 -2.4720 -3.3674 23 6 2.9818 -3.1657 -4.4915 24 7 3.9879 -3.8686 -5.0291 25 6 3.8439 -4.4756 -6.1840 26 6 2.6286 -4.3988 -6.8780 27 6 1.6025 -3.6906 -6.3427 28 7 1.7818 -3.0718 -5.1431 29 7 0.9514 -2.2814 -4.3375 30 1 -0.3633 0.3925 0.9498 31 1 -0.3634 0.6262 -0.8148 32 1 -0.3633 -1.0188 -0.1349 33 1 1.7660 -0.1642 2.1371 34 1 1.6026 -1.7235 1.2938 35 1 3.4838 -2.1089 2.8773 36 1 5.3614 -3.1785 5.4184 37 1 3.4984 -2.6528 -0.0019 38 1 5.0412 -1.7697 -0.1015 39 1 3.6518 -1.5744 -2.1952 40 1 3.9903 0.0003 -1.4317 41 1 4.6664 -5.0372 -6.6018 42 1 2.5101 -4.8978 -7.8285 43 1 0.6574 -3.6188 -6.8604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044786916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:07 Heat of formation + Delta-G solvation = 154.571930 kcal Electronic energy + Delta-G solvation = -28194.479836 eV Core-core repulsion = 24279.363214 eV Total energy + Delta-G solvation = -3915.116622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.34768 -40.48088 -39.02170 -37.35585 -35.12447 -34.46530 -32.86940 -31.87594 -31.54120 -31.10928 -29.22422 -27.07260 -26.01880 -24.90636 -24.24807 -23.48867 -22.67303 -21.60622 -20.15047 -19.37096 -18.75278 -18.38905 -17.24517 -17.09700 -16.96313 -16.23774 -15.94074 -15.13713 -14.99361 -14.75961 -14.13486 -14.01801 -13.73920 -13.67694 -13.53515 -13.23165 -13.10953 -12.82323 -12.66165 -12.43707 -12.03367 -11.97357 -11.58874 -11.40405 -10.85431 -10.83102 -10.69376 -10.54115 -10.49698 -10.20317 -10.17931 -9.88291 -9.75704 -9.62421 -9.34179 -9.23321 -8.78132 -8.42334 -6.89399 -5.70837 -2.99363 -0.13037 0.15674 1.30176 1.49851 2.55753 2.78797 2.93376 3.21570 3.48058 3.52231 3.53240 3.63886 3.75729 4.08041 4.30492 4.56056 4.63262 4.74997 5.10951 5.20822 5.23142 5.39671 5.43862 5.51256 5.55802 5.65006 5.66992 5.70848 5.83436 5.94957 6.05861 6.18024 6.28381 6.40105 6.48884 6.55944 6.61717 6.64111 6.82272 6.95917 7.04011 7.19953 7.28357 7.49523 7.74941 8.06601 8.47683 9.58617 10.16930 10.51835 11.51900 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.003186 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.661378 B = 8787.636978 C =10485.489564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.147 3.853 3 H 0.078 0.922 4 C -0.134 4.134 5 C 0.176 3.824 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.236 4.236 9 H 0.070 0.930 10 C -0.014 4.014 11 N -0.934 5.934 12 Si 0.906 3.094 13 H -0.287 1.287 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.141 4.141 17 C 0.061 3.939 18 N -0.571 5.571 19 C 0.604 3.396 20 O -0.509 6.509 21 C 0.250 3.750 22 N -0.488 5.488 23 C 0.439 3.561 24 N -0.447 5.447 25 C 0.209 3.791 26 C -0.220 4.220 27 C 0.172 3.828 28 N -0.329 5.329 29 N -0.271 5.271 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.145 0.855 40 H 0.062 0.938 41 H 0.194 0.806 42 H 0.177 0.823 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 -2.207 -27.037 28.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.045 3.955 3 H 0.096 0.904 4 C -0.173 4.173 5 C 0.066 3.934 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.368 4.368 9 H 0.088 0.912 10 C -0.210 4.210 11 N -0.583 5.583 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.182 4.182 17 C -0.062 4.062 18 N -0.303 5.303 19 C 0.385 3.615 20 O -0.383 6.383 21 C -0.034 4.034 22 N -0.222 5.222 23 C 0.080 3.920 24 N -0.161 5.161 25 C 0.022 3.978 26 C -0.245 4.245 27 C 0.035 3.965 28 N -0.109 5.109 29 N -0.104 5.104 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.162 0.838 40 H 0.080 0.920 41 H 0.210 0.790 42 H 0.194 0.806 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.287 -1.503 -25.986 27.030 hybrid contribution 0.398 -0.432 -0.150 0.606 sum -6.890 -1.935 -26.136 27.098 Atomic orbital electron populations 1.22227 0.92864 1.03667 1.01079 1.21445 0.95443 0.95385 0.83264 0.90377 1.22301 0.97901 1.00963 0.96136 1.20235 0.90672 0.95135 0.87382 0.93473 1.42415 1.12852 1.54507 1.26638 1.19203 0.89121 1.22142 1.06301 0.91215 1.24732 0.98091 0.99941 0.98255 1.69653 1.35398 1.33705 1.19496 0.86283 0.84743 0.77397 0.77862 1.21333 1.21790 1.21271 1.22541 1.01689 0.99803 0.94173 1.23137 0.77357 1.01941 1.03749 1.48062 1.08507 1.54863 1.18873 1.16498 0.85323 0.79519 0.80111 1.90884 1.16479 1.56063 1.74900 1.24566 0.87565 0.96395 0.94845 1.70753 1.18208 1.17445 1.15786 1.23111 0.82821 0.95451 0.90593 1.68149 1.25809 1.09381 1.12713 1.23701 0.96926 0.89984 0.87180 1.22033 0.93574 1.04327 1.04536 1.22251 1.01887 0.89536 0.82815 1.49080 1.12914 1.33050 1.15890 1.78934 1.12827 1.14094 1.04553 0.93049 0.90780 0.91672 0.90337 0.91721 0.78319 0.93536 0.92369 0.90668 0.83839 0.91990 0.78968 0.80554 0.79753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 7.62 37.16 0.28 -1.80 16 2 C 0.15 2.27 3.49 -67.60 -0.24 2.03 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.13 -2.35 4.83 -26.61 -0.13 -2.47 16 5 C 0.18 3.57 2.73 -67.89 -0.19 3.38 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 7 N -0.72 -18.44 5.12 -53.39 -0.27 -18.71 16 8 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 9 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 10 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 11 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16 12 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 16 C -0.14 -2.67 5.66 -26.61 -0.15 -2.82 16 17 C 0.06 0.97 6.31 -3.71 -0.02 0.95 16 18 N -0.57 -9.18 2.97 -166.22 -0.49 -9.67 16 19 C 0.60 10.10 7.49 -12.20 -0.09 10.01 16 20 O -0.51 -9.10 12.68 5.34 0.07 -9.03 16 21 C 0.25 3.98 7.67 -156.79 -1.20 2.78 16 22 N -0.49 -7.61 7.57 -12.23 -0.09 -7.70 16 23 C 0.44 5.78 8.99 -323.04 -2.90 2.88 16 24 N -0.45 -4.70 10.48 -13.79 -0.14 -4.84 16 25 C 0.21 0.97 11.26 -17.07 -0.19 0.78 16 26 C -0.22 -0.55 10.06 -39.77 -0.40 -0.95 16 27 C 0.17 0.94 11.32 -16.54 -0.19 0.76 16 28 N -0.33 -3.72 3.91 -13.80 -0.05 -3.77 16 29 N -0.27 -3.97 12.78 32.02 0.41 -3.56 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.12 6.67 -51.93 -0.35 0.77 16 32 H 0.06 1.06 6.83 -51.93 -0.35 0.70 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.38 10.45 7.80 -40.82 -0.32 10.14 16 36 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.15 2.35 3.69 -78.58 -0.29 2.06 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.19 0.05 8.06 -52.48 -0.42 -0.37 16 42 H 0.18 -0.35 8.06 -52.49 -0.42 -0.77 16 43 H 0.19 0.38 8.06 -52.48 -0.42 -0.04 16 LS Contribution 352.69 15.07 5.32 5.32 Total: -1.00 -36.77 352.69 -10.73 -47.50 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.50 Total: 6.52 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -5.66 Total: 8.23 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: 0.08 Total: -76.18 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.07 Total: -9.03 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.77 -10.73 -47.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044786916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.073 kcal (2) G-P(sol) polarization free energy of solvation -36.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds