Wall clock time and date at job start Tue Mar 31 2020 05:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.69974 * 2 1 4 4 C 1.53192 * 109.58574 * 120.35574 * 2 1 3 5 5 C 1.53041 * 109.30964 * 174.42397 * 4 2 1 6 6 H 1.09000 * 109.45782 * 178.62852 * 5 4 2 7 7 N 1.46498 * 109.45968 * 58.65520 * 5 4 2 8 8 C 1.36942 * 119.99871 * 154.97435 * 7 5 4 9 9 H 1.08004 * 119.99683 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00182 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99888 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00161 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47233 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47211 * 239.99891 * 12 10 8 15 15 H 1.48494 * 109.47291 * 119.99673 * 12 10 8 16 16 C 1.53044 * 109.52856 * 298.64076 * 5 4 2 17 17 C 1.53166 * 109.32399 * 61.37280 * 16 5 4 18 18 N 1.46922 * 109.58538 * 239.64718 * 2 1 3 19 19 C 1.34771 * 120.63362 * 6.62599 * 18 2 1 20 20 O 1.21519 * 120.00187 * 6.82615 * 19 18 2 21 21 C 1.48126 * 120.00327 * 186.83276 * 19 18 2 22 22 N 1.33468 * 125.32335 * 7.84358 * 21 19 18 23 23 C 1.32499 * 109.76093 * 180.02562 * 22 21 19 24 24 N 1.33978 * 132.35274 * 179.97438 * 23 22 21 25 25 C 1.31261 * 120.88265 * 179.97438 * 24 23 22 26 26 C 1.40172 * 120.35784 * 0.04354 * 25 24 23 27 27 C 1.35682 * 119.26992 * 359.97438 * 26 25 24 28 28 N 1.36165 * 119.02555 * 0.02562 * 27 26 25 29 29 N 1.31981 * 125.32777 * 187.54625 * 21 19 18 30 30 H 1.08996 * 109.47032 * 292.36589 * 1 2 3 31 31 H 1.08998 * 109.47001 * 52.36222 * 1 2 3 32 32 H 1.08995 * 109.46978 * 172.36281 * 1 2 3 33 33 H 1.09001 * 109.49820 * 54.47084 * 4 2 1 34 34 H 1.08997 * 109.49735 * 294.37576 * 4 2 1 35 35 H 0.96996 * 120.00273 * 334.97124 * 7 5 4 36 36 H 0.97004 * 119.99636 * 0.02562 * 11 10 8 37 37 H 1.08997 * 109.49470 * 181.30903 * 16 5 4 38 38 H 1.09003 * 109.49336 * 301.41036 * 16 5 4 39 39 H 1.09006 * 109.58538 * 185.57122 * 17 16 5 40 40 H 1.08998 * 109.70943 * 65.21012 * 17 16 5 41 41 H 1.08004 * 119.82156 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.36449 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.48446 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5675 -0.8479 1.1701 6 1 3.9378 -1.3450 2.0667 7 7 4.1570 0.4899 1.0749 8 6 5.4412 0.7040 1.4995 9 1 6.0193 -0.1133 1.9048 10 6 5.9997 1.9717 1.4098 11 7 5.2950 2.9678 0.9163 12 14 7.7512 2.2639 1.9895 13 1 8.3228 0.9915 2.4990 14 1 7.7505 3.2760 3.0763 15 1 8.5725 2.7566 0.8548 16 6 3.9567 -1.6655 -0.0637 17 6 3.4651 -0.9468 -1.3238 18 7 2.0226 -0.6995 -1.1945 19 6 1.1675 -1.1061 -2.1536 20 8 -0.0040 -0.7883 -2.0977 21 6 1.6557 -1.9405 -3.2759 22 7 2.8761 -2.4730 -3.3676 23 6 2.9816 -3.1597 -4.4959 24 7 3.9873 -3.8625 -5.0341 25 6 3.8434 -4.4676 -6.1900 26 6 2.6288 -4.3876 -6.8851 27 6 1.6036 -3.6782 -6.3498 28 7 1.7829 -3.0615 -5.1491 29 7 0.9502 -2.2783 -4.3389 30 1 -0.3633 0.3910 0.9503 31 1 -0.3633 0.6276 -0.8138 32 1 -0.3633 -1.0185 -0.1366 33 1 1.6030 -1.7253 1.2913 34 1 1.7660 -0.1669 2.1368 35 1 3.6377 1.2239 0.7112 36 1 4.3853 2.8161 0.6156 37 1 5.0410 -1.7693 -0.1041 38 1 3.4981 -2.6527 -0.0054 39 1 3.6519 -1.5717 -2.1972 40 1 3.9900 0.0020 -1.4342 41 1 4.6656 -5.0293 -6.6083 42 1 2.5102 -4.8857 -7.8360 43 1 0.6591 -3.6039 -6.8684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044786917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:11 Heat of formation + Delta-G solvation = 157.575657 kcal Electronic energy + Delta-G solvation = -28701.271198 eV Core-core repulsion = 24786.284828 eV Total energy + Delta-G solvation = -3914.986371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.30542 -40.44478 -39.00548 -37.48015 -35.09186 -34.38450 -32.82592 -32.00618 -31.49679 -31.06183 -28.78183 -27.08688 -25.97561 -24.86840 -24.12790 -23.39696 -23.09684 -21.74562 -20.21098 -19.03692 -18.60481 -18.26027 -17.22064 -17.16389 -16.93084 -16.17167 -15.90050 -15.29172 -15.00091 -14.58617 -14.23642 -13.99953 -13.75996 -13.62595 -13.56100 -13.25016 -13.09105 -12.99185 -12.73346 -12.39314 -12.04371 -11.89867 -11.59243 -11.30110 -10.95442 -10.67514 -10.58555 -10.48669 -10.31174 -10.18308 -10.13540 -9.98195 -9.65677 -9.30207 -9.17642 -9.09510 -8.80060 -8.23873 -6.96934 -6.04373 -3.03945 -0.09728 0.19405 1.34546 1.55517 2.62169 2.82823 2.99197 3.28295 3.55512 3.62020 3.69517 3.71332 3.78480 4.14773 4.33905 4.59561 4.71961 4.78186 5.16457 5.25002 5.26220 5.42607 5.49297 5.55443 5.57808 5.69161 5.70671 5.79810 5.83659 5.96888 6.00320 6.15722 6.24260 6.39923 6.48315 6.53965 6.65282 6.75240 6.80687 6.86843 7.00918 7.11625 7.34938 7.60857 7.88564 8.15901 8.80816 9.28211 10.14571 10.30072 11.43812 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.003529 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.451833 B = 7932.311382 C = 9324.619412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.146 3.854 3 H 0.082 0.918 4 C -0.133 4.133 5 C 0.176 3.824 6 H 0.051 0.949 7 N -0.733 5.733 8 C -0.326 4.326 9 H 0.065 0.935 10 C -0.046 4.046 11 N -0.946 5.946 12 Si 1.084 2.916 13 H -0.295 1.295 14 H -0.295 1.295 15 H -0.294 1.294 16 C -0.139 4.139 17 C 0.070 3.930 18 N -0.567 5.567 19 C 0.601 3.399 20 O -0.513 6.513 21 C 0.252 3.748 22 N -0.487 5.487 23 C 0.438 3.562 24 N -0.447 5.447 25 C 0.208 3.792 26 C -0.221 4.221 27 C 0.172 3.828 28 N -0.329 5.329 29 N -0.271 5.271 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.366 0.634 36 H 0.254 0.746 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.141 0.859 40 H 0.075 0.925 41 H 0.193 0.807 42 H 0.177 0.823 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.451 -17.710 -16.964 25.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.044 3.956 3 H 0.100 0.900 4 C -0.172 4.172 5 C 0.066 3.934 6 H 0.069 0.931 7 N -0.377 5.377 8 C -0.457 4.457 9 H 0.083 0.917 10 C -0.244 4.244 11 N -0.592 5.592 12 Si 0.916 3.084 13 H -0.222 1.222 14 H -0.222 1.222 15 H -0.221 1.221 16 C -0.180 4.180 17 C -0.052 4.052 18 N -0.298 5.298 19 C 0.383 3.617 20 O -0.387 6.387 21 C -0.032 4.032 22 N -0.221 5.221 23 C 0.079 3.921 24 N -0.161 5.161 25 C 0.021 3.979 26 C -0.246 4.246 27 C 0.035 3.965 28 N -0.110 5.110 29 N -0.104 5.104 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.200 0.800 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.157 0.843 40 H 0.093 0.907 41 H 0.210 0.790 42 H 0.194 0.806 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.550 -16.088 -15.685 23.404 hybrid contribution -1.713 -1.169 -1.022 2.312 sum -8.263 -17.257 -16.707 25.400 Atomic orbital electron populations 1.22228 0.93006 1.03389 1.01112 1.21372 0.95032 0.95980 0.83245 0.90047 1.22269 0.97746 1.00360 0.96866 1.20189 0.89992 0.87750 0.95454 0.93059 1.42509 1.14072 1.04781 1.76342 1.20104 0.90504 0.96951 1.38155 0.91691 1.25710 1.06032 0.91615 1.01020 1.70825 1.11001 1.32399 1.44944 0.83160 0.74552 0.74698 0.76017 1.22162 1.22184 1.22144 1.22373 1.01467 0.97736 0.96440 1.22953 0.76946 1.02980 1.02277 1.48049 1.08676 1.54420 1.18678 1.16509 0.85355 0.79706 0.80177 1.90872 1.16574 1.56266 1.74985 1.24590 0.87511 0.96190 0.94905 1.70821 1.18248 1.17284 1.15750 1.23131 0.82941 0.95502 0.90539 1.68130 1.25718 1.09401 1.12845 1.23691 0.96881 0.90047 0.87255 1.22022 0.93621 1.04419 1.04511 1.22247 1.01889 0.89466 0.82858 1.49094 1.12854 1.33261 1.15762 1.78938 1.12660 1.14336 1.04478 0.93238 0.90660 0.91855 0.91825 0.90531 0.80010 0.93469 0.90788 0.93366 0.84321 0.90668 0.79002 0.80586 0.79780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 7.62 37.16 0.28 -1.99 16 2 C 0.15 2.58 3.19 -67.60 -0.22 2.37 16 3 H 0.08 1.58 6.64 -51.93 -0.34 1.23 16 4 C -0.13 -2.32 5.07 -26.61 -0.13 -2.46 16 5 C 0.18 3.57 3.10 -67.89 -0.21 3.36 16 6 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 7 N -0.73 -18.05 4.31 -53.38 -0.23 -18.28 16 8 C -0.33 -9.06 9.93 -15.06 -0.15 -9.21 16 9 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 10 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 11 N -0.95 -29.32 13.70 55.49 0.76 -28.56 16 12 Si 1.08 26.29 29.92 -169.99 -5.09 21.20 16 13 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 16 C -0.14 -2.64 5.78 -26.62 -0.15 -2.79 16 17 C 0.07 1.32 6.05 -3.72 -0.02 1.30 16 18 N -0.57 -10.28 2.97 -166.23 -0.49 -10.77 16 19 C 0.60 10.96 7.49 -12.20 -0.09 10.87 16 20 O -0.51 -9.86 12.68 5.35 0.07 -9.79 16 21 C 0.25 4.30 7.67 -156.79 -1.20 3.10 16 22 N -0.49 -8.08 7.58 -12.24 -0.09 -8.18 16 23 C 0.44 6.09 8.99 -323.05 -2.90 3.19 16 24 N -0.45 -4.94 10.48 -13.79 -0.14 -5.08 16 25 C 0.21 1.06 11.27 -17.07 -0.19 0.87 16 26 C -0.22 -0.66 10.06 -39.77 -0.40 -1.06 16 27 C 0.17 1.05 11.32 -16.54 -0.19 0.86 16 28 N -0.33 -3.97 3.91 -13.80 -0.05 -4.02 16 29 N -0.27 -4.23 12.78 32.02 0.41 -3.82 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.29 6.67 -51.93 -0.35 0.95 16 32 H 0.06 1.05 6.83 -51.93 -0.35 0.70 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.37 9.33 4.89 -40.82 -0.20 9.13 16 36 H 0.25 7.78 6.77 -40.82 -0.28 7.51 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.14 2.58 3.70 -78.12 -0.29 2.29 16 40 H 0.08 1.63 7.74 -51.93 -0.40 1.23 16 41 H 0.19 0.12 8.06 -52.48 -0.42 -0.31 16 42 H 0.18 -0.27 8.06 -52.49 -0.42 -0.69 16 43 H 0.19 0.49 8.06 -52.48 -0.42 0.07 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -36.94 346.71 -10.54 -47.48 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.22 Total: 7.64 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -5.68 Total: 6.96 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: 0.15 Total: -78.72 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.07 Total: -9.79 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.09 Total: 21.20 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.94 -10.54 -47.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044786917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.054 kcal (2) G-P(sol) polarization free energy of solvation -36.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds