Wall clock time and date at job start Tue Mar 31 2020 04:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46414 * 2 1 4 4 C 1.34780 * 120.00083 * 60.02526 * 3 2 1 5 5 O 1.21622 * 119.99887 * 0.02562 * 4 3 2 6 6 C 1.47311 * 119.99805 * 180.02562 * 4 3 2 7 7 C 1.38996 * 120.90960 * 359.91685 * 6 4 3 8 8 C 1.39719 * 119.29368 * 180.02562 * 7 6 4 9 9 C 1.35258 * 121.07858 * 0.02711 * 8 7 6 10 10 N 1.35716 * 121.57367 * 0.02562 * 9 8 7 11 11 N 1.40216 * 134.09005 * 179.97438 * 10 9 8 12 12 N 1.29010 * 106.95835 * 180.02562 * 11 10 9 13 13 N 1.28591 * 110.78825 * 0.02562 * 12 11 10 14 14 C 1.32044 * 110.21499 * 359.97438 * 13 12 11 15 15 C 1.53046 * 109.44528 * 119.97007 * 2 1 3 16 16 C 1.53200 * 109.30864 * 181.37707 * 15 2 1 17 17 N 1.46925 * 108.77377 * 305.36030 * 16 15 2 18 18 C 1.36938 * 120.62853 * 233.63501 * 17 16 15 19 19 H 1.08001 * 119.99838 * 152.60459 * 18 17 16 20 20 C 1.38801 * 120.00207 * 332.59688 * 18 17 16 21 21 N 1.31619 * 120.00557 * 159.36381 * 20 18 17 22 22 Si 1.86803 * 119.99982 * 339.36978 * 20 18 17 23 23 H 1.48496 * 109.47402 * 92.89916 * 22 20 18 24 24 H 1.48509 * 109.47182 * 212.89988 * 22 20 18 25 25 H 1.48502 * 109.47067 * 332.89660 * 22 20 18 26 26 C 1.46929 * 118.73938 * 53.60902 * 17 16 15 27 27 C 1.53038 * 109.45705 * 240.02275 * 2 1 3 28 28 H 1.09001 * 109.47231 * 59.99414 * 1 2 3 29 29 H 1.08994 * 109.47676 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46737 * 300.00014 * 1 2 3 31 31 H 0.97000 * 119.99993 * 240.03197 * 3 2 1 32 32 H 1.08002 * 120.35174 * 0.02562 * 7 6 4 33 33 H 1.08000 * 119.45923 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.21199 * 179.97438 * 9 8 7 35 35 H 1.09002 * 109.49430 * 301.32318 * 15 2 1 36 36 H 1.08994 * 109.49945 * 61.42199 * 15 2 1 37 37 H 1.08998 * 109.58033 * 185.57772 * 16 15 2 38 38 H 1.08995 * 109.70261 * 65.21743 * 16 15 2 39 39 H 0.96997 * 120.00544 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.58573 * 186.60117 * 26 17 16 41 41 H 1.08999 * 109.70257 * 66.25051 * 26 17 16 42 42 H 1.09000 * 109.50057 * 298.58835 * 27 2 1 43 43 H 1.09001 * 109.49711 * 58.64836 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.6929 2.2109 1.0111 5 8 0.9945 1.8128 1.9237 6 6 2.1833 3.6000 1.0107 7 6 2.9840 4.0743 -0.0217 8 6 3.4308 5.3977 0.0123 9 6 3.0972 6.2212 1.0321 10 7 2.3188 5.7993 2.0607 11 7 1.8231 6.4080 3.2225 12 7 1.1277 5.5182 3.8462 13 7 1.1289 4.4047 3.2029 14 6 1.8437 4.5167 2.0983 15 6 2.0395 -0.7209 1.2502 16 6 3.5711 -0.6891 1.2645 17 7 4.0676 -1.2495 0.0003 18 6 4.9751 -2.2749 0.0005 19 1 5.0110 -2.9645 -0.8300 20 6 5.8491 -2.4281 1.0679 21 7 6.4250 -3.5914 1.2854 22 14 6.2080 -0.9830 2.1959 23 1 5.2787 -1.0161 3.3537 24 1 7.6084 -1.0707 2.6825 25 1 6.0224 0.2866 1.4483 26 6 3.5713 -0.6892 -1.2640 27 6 2.0398 -0.7210 -1.2499 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 2.5754 1.6987 -0.7277 32 1 3.2578 3.4267 -0.8416 33 1 4.0527 5.7691 -0.7887 34 1 3.4597 7.2386 1.0282 35 1 1.6569 -0.2207 2.1399 36 1 1.6972 -1.7557 1.2384 37 1 3.9411 -1.2851 2.0987 38 1 3.9163 0.3395 1.3688 39 1 7.0360 -3.6983 2.0310 40 1 3.9416 -1.2853 -2.0981 41 1 3.9145 0.3399 -1.3697 42 1 1.6974 -1.7558 -1.2382 43 1 1.6569 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045449992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:14 Heat of formation + Delta-G solvation = 154.560403 kcal Electronic energy + Delta-G solvation = -29159.840788 eV Core-core repulsion = 25244.723666 eV Total energy + Delta-G solvation = -3915.117122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.61541 -40.52468 -38.91809 -37.62270 -34.71766 -34.36614 -32.42070 -32.21166 -31.43261 -30.51205 -30.29225 -27.76837 -25.81437 -24.64182 -24.07164 -23.62597 -22.88516 -21.69306 -20.86008 -19.28229 -18.95183 -17.90508 -17.72178 -17.14222 -16.84765 -16.13721 -15.34907 -15.26017 -14.93378 -14.49792 -14.16457 -14.07757 -13.73794 -13.61600 -13.42519 -13.35991 -13.17510 -12.75384 -12.65945 -12.41840 -12.13690 -12.07093 -11.81109 -11.70915 -11.41237 -11.29850 -11.20174 -10.87346 -10.62387 -10.60561 -10.32955 -10.09594 -9.81046 -9.57983 -9.40476 -9.06857 -8.90622 -8.60818 -7.02010 -5.98921 -3.35052 -0.39953 0.13679 1.29493 1.86502 2.23721 2.89471 3.20319 3.22529 3.32584 3.44172 3.46608 3.62240 3.92669 4.08898 4.39554 4.49695 4.66230 4.90306 4.91599 4.95248 5.08794 5.14809 5.19426 5.22291 5.25155 5.40754 5.45562 5.70408 5.80865 5.90889 5.91357 5.94949 6.03489 6.09333 6.26647 6.45056 6.47325 6.48992 6.57850 6.64854 6.77043 6.91886 7.50930 7.92078 8.12272 8.18468 8.28632 8.89702 9.68340 10.05436 11.16991 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.004190 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.161054 B = 6680.555734 C = 7344.575178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.186 3.814 3 N -0.706 5.706 4 C 0.559 3.441 5 O -0.495 6.495 6 C -0.093 4.093 7 C -0.022 4.022 8 C -0.141 4.141 9 C 0.124 3.876 10 N -0.309 5.309 11 N -0.109 5.109 12 N -0.010 5.010 13 N -0.287 5.287 14 C 0.273 3.727 15 C -0.146 4.146 16 C 0.131 3.869 17 N -0.604 5.604 18 C -0.262 4.262 19 H 0.086 0.914 20 C 0.027 3.973 21 N -0.907 5.907 22 Si 0.881 3.119 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.274 1.274 26 C 0.149 3.851 27 C -0.139 4.139 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.396 0.604 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.184 0.816 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.021 0.979 39 H 0.263 0.737 40 H 0.066 0.934 41 H 0.016 0.984 42 H 0.082 0.918 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 19.039 -9.042 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.102 3.898 3 N -0.359 5.359 4 C 0.343 3.657 5 O -0.369 6.369 6 C -0.102 4.102 7 C -0.048 4.048 8 C -0.165 4.165 9 C -0.003 4.003 10 N -0.090 5.090 11 N -0.092 5.092 12 N -0.003 5.003 13 N -0.144 5.144 14 C 0.014 3.986 15 C -0.186 4.186 16 C 0.006 3.994 17 N -0.328 5.328 18 C -0.390 4.390 19 H 0.103 0.897 20 C -0.172 4.172 21 N -0.550 5.550 22 Si 0.712 3.288 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.199 1.199 26 C 0.023 3.977 27 C -0.178 4.178 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.231 0.769 32 H 0.181 0.819 33 H 0.193 0.807 34 H 0.201 0.799 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.033 0.967 42 H 0.101 0.899 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.487 19.144 -6.834 22.028 hybrid contribution 1.218 0.936 -0.426 1.594 sum -7.269 20.079 -7.260 22.555 Atomic orbital electron populations 1.22228 0.94586 1.02457 1.02692 1.20341 0.93246 0.79073 0.97183 1.46008 1.53188 1.12420 1.24240 1.17345 0.81516 0.83520 0.83278 1.90860 1.36028 1.75605 1.34445 1.20496 1.02580 0.94605 0.92507 1.22058 0.90696 0.95752 0.96322 1.21031 1.02846 0.93339 0.99249 1.21779 0.91550 1.02026 0.84916 1.49010 1.32514 1.10224 1.17209 1.82802 1.16894 1.17268 0.92251 1.78055 1.08438 0.94698 1.19068 1.75315 1.20529 1.15063 1.03470 1.23625 0.94391 0.84814 0.95752 1.22439 0.98366 1.00461 0.97307 1.21248 0.91712 0.96477 0.89951 1.44350 1.48875 1.40276 0.99278 1.18900 1.09785 1.02791 1.07549 0.89657 1.25242 0.97393 0.96514 0.98077 1.69828 1.32551 1.21943 1.30629 0.86986 0.76244 0.84697 0.80878 1.21590 1.23209 1.19889 1.20879 0.90662 0.96170 0.90008 1.22353 0.99240 1.01171 0.95041 0.93123 0.91715 0.90542 0.76860 0.81881 0.80706 0.79877 0.90379 0.90802 0.91147 0.96152 0.92725 0.91504 0.96651 0.89912 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.40 37.16 0.31 -1.81 16 2 C 0.19 2.68 0.66 -131.78 -0.09 2.59 16 3 N -0.71 -8.91 4.06 -48.67 -0.20 -9.10 16 4 C 0.56 8.07 7.19 -12.57 -0.09 7.98 16 5 O -0.49 -9.00 12.49 5.26 0.07 -8.93 16 6 C -0.09 -1.09 6.06 -102.72 -0.62 -1.72 16 7 C -0.02 -0.15 9.63 -38.75 -0.37 -0.52 16 8 C -0.14 -0.58 9.92 -40.09 -0.40 -0.98 16 9 C 0.12 0.75 11.15 -16.90 -0.19 0.56 16 10 N -0.31 -3.55 3.94 -10.99 -0.04 -3.59 16 11 N -0.11 -1.53 13.99 60.35 0.84 -0.68 16 12 N -0.01 -0.16 13.36 60.35 0.81 0.65 16 13 N -0.29 -4.97 11.75 32.20 0.38 -4.59 16 14 C 0.27 3.87 7.85 -154.53 -1.21 2.66 16 15 C -0.15 -2.67 4.67 -26.60 -0.12 -2.79 16 16 C 0.13 2.84 3.95 -3.71 -0.01 2.83 16 17 N -0.60 -13.33 2.77 -172.32 -0.48 -13.81 16 18 C -0.26 -7.02 10.03 -15.06 -0.15 -7.17 16 19 H 0.09 2.43 8.06 -52.49 -0.42 2.00 16 20 C 0.03 0.76 5.23 -17.43 -0.09 0.67 16 21 N -0.91 -27.46 13.97 55.49 0.78 -26.69 16 22 Si 0.88 22.44 24.34 -169.99 -4.14 18.30 16 23 H -0.29 -7.37 6.62 56.52 0.37 -6.99 16 24 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 25 H -0.27 -6.69 6.64 56.52 0.38 -6.32 16 26 C 0.15 2.48 6.24 -3.71 -0.02 2.46 16 27 C -0.14 -1.88 4.96 -26.61 -0.13 -2.01 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.16 6.17 -51.92 -0.32 0.84 16 31 H 0.40 3.79 5.37 -40.82 -0.22 3.57 16 32 H 0.16 0.61 6.49 -52.49 -0.34 0.27 16 33 H 0.18 -0.03 8.06 -52.49 -0.42 -0.45 16 34 H 0.18 0.40 8.06 -52.48 -0.42 -0.02 16 35 H 0.08 1.51 6.20 -51.93 -0.32 1.19 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.07 1.74 4.50 -51.93 -0.23 1.51 16 38 H 0.02 0.44 6.67 -51.93 -0.35 0.10 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 41 H 0.02 0.23 6.94 -51.93 -0.36 -0.13 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -36.83 340.41 -5.18 -42.01 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.13 Total: -1.44 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -3.19 Total: 2.74 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 2.09 Total: -57.81 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.93 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.14 Total: 18.30 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.83 -5.18 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045449992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.572 kcal (2) G-P(sol) polarization free energy of solvation -36.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds