Wall clock time and date at job start Tue Mar 31 2020 04:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46414 * 2 1 4 4 C 1.34780 * 120.00083 * 60.02526 * 3 2 1 5 5 O 1.21622 * 119.99887 * 0.02562 * 4 3 2 6 6 C 1.47311 * 119.99805 * 180.02562 * 4 3 2 7 7 C 1.38996 * 120.90960 * 359.91685 * 6 4 3 8 8 C 1.39719 * 119.29368 * 180.02562 * 7 6 4 9 9 C 1.35258 * 121.07858 * 0.02711 * 8 7 6 10 10 N 1.35716 * 121.57367 * 0.02562 * 9 8 7 11 11 N 1.40216 * 134.09005 * 179.97438 * 10 9 8 12 12 N 1.29010 * 106.95835 * 180.02562 * 11 10 9 13 13 N 1.28591 * 110.78825 * 0.02562 * 12 11 10 14 14 C 1.32044 * 110.21499 * 359.97438 * 13 12 11 15 15 C 1.53046 * 109.44528 * 119.97007 * 2 1 3 16 16 C 1.53200 * 109.30864 * 181.37707 * 15 2 1 17 17 N 1.46925 * 108.77377 * 305.36030 * 16 15 2 18 18 C 1.36938 * 120.62853 * 233.63501 * 17 16 15 19 19 H 1.08001 * 119.99838 * 152.60459 * 18 17 16 20 20 C 1.38801 * 120.00207 * 332.59688 * 18 17 16 21 21 N 1.31619 * 120.00557 * 159.36381 * 20 18 17 22 22 Si 1.86803 * 119.99982 * 339.36978 * 20 18 17 23 23 H 1.48496 * 109.47402 * 92.89916 * 22 20 18 24 24 H 1.48509 * 109.47182 * 212.89988 * 22 20 18 25 25 H 1.48502 * 109.47067 * 332.89660 * 22 20 18 26 26 C 1.46929 * 118.73938 * 53.60902 * 17 16 15 27 27 C 1.53038 * 109.45705 * 240.02275 * 2 1 3 28 28 H 1.09001 * 109.47231 * 59.99414 * 1 2 3 29 29 H 1.08994 * 109.47676 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46737 * 300.00014 * 1 2 3 31 31 H 0.97000 * 119.99993 * 240.03197 * 3 2 1 32 32 H 1.08002 * 120.35174 * 0.02562 * 7 6 4 33 33 H 1.08000 * 119.45923 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.21199 * 179.97438 * 9 8 7 35 35 H 1.09002 * 109.49430 * 301.32318 * 15 2 1 36 36 H 1.08994 * 109.49945 * 61.42199 * 15 2 1 37 37 H 1.08998 * 109.58033 * 185.57772 * 16 15 2 38 38 H 1.08995 * 109.70261 * 65.21743 * 16 15 2 39 39 H 0.96997 * 120.00544 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.58573 * 186.60117 * 26 17 16 41 41 H 1.08999 * 109.70257 * 66.25051 * 26 17 16 42 42 H 1.09000 * 109.50057 * 298.58835 * 27 2 1 43 43 H 1.09001 * 109.49711 * 58.64836 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.6929 2.2109 1.0111 5 8 0.9945 1.8128 1.9237 6 6 2.1833 3.6000 1.0107 7 6 2.9840 4.0743 -0.0217 8 6 3.4308 5.3977 0.0123 9 6 3.0972 6.2212 1.0321 10 7 2.3188 5.7993 2.0607 11 7 1.8231 6.4080 3.2225 12 7 1.1277 5.5182 3.8462 13 7 1.1289 4.4047 3.2029 14 6 1.8437 4.5167 2.0983 15 6 2.0395 -0.7209 1.2502 16 6 3.5711 -0.6891 1.2645 17 7 4.0676 -1.2495 0.0003 18 6 4.9751 -2.2749 0.0005 19 1 5.0110 -2.9645 -0.8300 20 6 5.8491 -2.4281 1.0679 21 7 6.4250 -3.5914 1.2854 22 14 6.2080 -0.9830 2.1959 23 1 5.2787 -1.0161 3.3537 24 1 7.6084 -1.0707 2.6825 25 1 6.0224 0.2866 1.4483 26 6 3.5713 -0.6892 -1.2640 27 6 2.0398 -0.7210 -1.2499 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 2.5754 1.6987 -0.7277 32 1 3.2578 3.4267 -0.8416 33 1 4.0527 5.7691 -0.7887 34 1 3.4597 7.2386 1.0282 35 1 1.6569 -0.2207 2.1399 36 1 1.6972 -1.7557 1.2384 37 1 3.9411 -1.2851 2.0987 38 1 3.9163 0.3395 1.3688 39 1 7.0360 -3.6983 2.0310 40 1 3.9416 -1.2853 -2.0981 41 1 3.9145 0.3399 -1.3697 42 1 1.6974 -1.7558 -1.2382 43 1 1.6569 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045449992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:13 Heat of formation + Delta-G solvation = 125.884467 kcal Electronic energy + Delta-G solvation = -29161.084270 eV Core-core repulsion = 25244.723666 eV Total energy + Delta-G solvation = -3916.360604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.50910 -41.63802 -39.74689 -38.87409 -36.24301 -35.23806 -33.87601 -33.16734 -32.81559 -31.97091 -31.20015 -29.26253 -26.59332 -25.71012 -25.38770 -24.67091 -24.40281 -22.93585 -22.04718 -20.46633 -19.89203 -19.01189 -18.65984 -18.28552 -18.05406 -17.23170 -16.71665 -16.42627 -16.07285 -15.81666 -15.60065 -15.21119 -15.11773 -14.86794 -14.63747 -14.25170 -14.19498 -13.97553 -13.70571 -13.65829 -13.54948 -13.29027 -13.10594 -12.85077 -12.76225 -12.55958 -12.48800 -12.18720 -12.15240 -12.00257 -11.62454 -11.48664 -11.32493 -11.31477 -10.75795 -10.65632 -10.09710 -9.72293 -8.88930 -8.16875 -5.45829 -1.07282 -0.61193 0.56794 0.94414 1.28856 1.33638 1.42487 1.47976 1.96289 2.30984 2.40190 2.47470 2.83372 3.04987 3.35816 3.40757 3.56910 3.68301 3.83260 3.94729 4.00005 4.08102 4.19020 4.33535 4.37414 4.45095 4.53337 4.68812 4.70011 4.73073 4.84033 4.87351 4.94686 4.96429 5.03090 5.15657 5.18247 5.23134 5.34412 5.39110 5.44759 5.65281 5.89566 6.15369 6.56896 6.94113 7.15073 7.22712 7.65223 8.06498 9.03103 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.004190 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.161054 B = 6680.555734 C = 7344.575178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.192 3.808 3 N -0.694 5.694 4 C 0.557 3.443 5 O -0.546 6.546 6 C -0.138 4.138 7 C 0.017 3.983 8 C -0.113 4.113 9 C 0.117 3.883 10 N -0.306 5.306 11 N -0.122 5.122 12 N -0.040 5.040 13 N -0.344 5.344 14 C 0.253 3.747 15 C -0.140 4.140 16 C 0.136 3.864 17 N -0.615 5.615 18 C -0.237 4.237 19 H 0.063 0.937 20 C -0.031 4.031 21 N -0.957 5.957 22 Si 0.934 3.066 23 H -0.302 1.302 24 H -0.313 1.313 25 H -0.250 1.250 26 C 0.140 3.860 27 C -0.125 4.125 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.414 0.586 32 H 0.204 0.796 33 H 0.238 0.762 34 H 0.227 0.773 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.030 0.970 38 H 0.026 0.974 39 H 0.259 0.741 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 22.493 -13.509 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.107 3.893 3 N -0.348 5.348 4 C 0.343 3.657 5 O -0.424 6.424 6 C -0.147 4.147 7 C -0.008 4.008 8 C -0.136 4.136 9 C -0.008 4.008 10 N -0.086 5.086 11 N -0.106 5.106 12 N -0.033 5.033 13 N -0.202 5.202 14 C -0.004 4.004 15 C -0.180 4.180 16 C 0.011 3.989 17 N -0.340 5.340 18 C -0.367 4.367 19 H 0.080 0.920 20 C -0.226 4.226 21 N -0.604 5.604 22 Si 0.765 3.235 23 H -0.230 1.230 24 H -0.242 1.242 25 H -0.173 1.173 26 C 0.016 3.984 27 C -0.165 4.165 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.253 0.747 32 H 0.221 0.779 33 H 0.255 0.745 34 H 0.243 0.757 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.759 22.669 -11.374 26.522 hybrid contribution 1.037 -0.079 0.731 1.271 sum -6.722 22.590 -10.643 25.860 Atomic orbital electron populations 1.22125 0.93466 1.02713 1.02822 1.20172 0.94033 0.79772 0.95333 1.45787 1.53237 1.11305 1.24501 1.17768 0.80607 0.84673 0.82606 1.90846 1.38359 1.76822 1.36378 1.20326 1.06666 0.93288 0.94460 1.22739 0.86364 0.97243 0.94494 1.21841 1.01066 0.91441 0.99239 1.22985 0.89794 1.04574 0.83493 1.49136 1.32735 1.09233 1.17477 1.82589 1.17228 1.17302 0.93438 1.77969 1.09926 0.95115 1.20325 1.75134 1.23208 1.16130 1.05747 1.23835 0.94605 0.86281 0.95710 1.22315 0.95998 1.00323 0.99377 1.21109 0.93623 0.95614 0.88603 1.44472 1.48157 1.39836 1.01505 1.18931 1.09005 1.02963 1.05762 0.91959 1.25771 0.98502 0.98164 1.00126 1.69948 1.34597 1.23823 1.31992 0.86119 0.74921 0.83259 0.79211 1.23037 1.24181 1.17337 1.21230 0.92498 0.97706 0.87008 1.22251 0.96773 1.01117 0.96310 0.90321 0.91443 0.93034 0.74700 0.77888 0.74534 0.75656 0.92042 0.92084 0.95124 0.95605 0.93228 0.91472 0.92869 0.91095 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 8.40 71.98 0.60 -3.10 16 2 C 0.19 5.03 0.66 3.63 0.00 5.03 16 3 N -0.69 -14.96 4.06 -426.13 -1.73 -16.69 16 4 C 0.56 15.24 7.19 86.63 0.62 15.87 16 5 O -0.55 -20.49 12.49 -4.10 -0.05 -20.54 16 6 C -0.14 -2.89 6.06 -18.63 -0.11 -3.00 16 7 C 0.02 0.12 9.63 22.81 0.22 0.34 16 8 C -0.11 -0.07 9.92 21.94 0.22 0.15 16 9 C 0.12 0.80 11.15 83.40 0.93 1.73 16 10 N -0.31 -6.46 3.94 -188.68 -0.74 -7.20 16 11 N -0.12 -3.44 13.99 37.02 0.52 -2.92 16 12 N -0.04 -1.41 13.36 37.02 0.49 -0.92 16 13 N -0.34 -12.60 11.75 -52.05 -0.61 -13.21 16 14 C 0.25 7.07 7.85 135.76 1.07 8.13 16 15 C -0.14 -5.13 4.67 30.68 0.14 -4.99 16 16 C 0.14 5.79 3.95 86.37 0.34 6.13 16 17 N -0.61 -26.13 2.77 -699.10 -1.94 -28.06 16 18 C -0.24 -12.68 10.03 84.03 0.84 -11.84 16 19 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 20 C -0.03 -1.78 5.23 84.86 0.44 -1.34 16 21 N -0.96 -59.88 13.97 21.65 0.30 -59.58 16 22 Si 0.93 47.14 24.34 68.60 1.67 48.81 16 23 H -0.30 -15.71 6.62 99.48 0.66 -15.05 16 24 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 25 H -0.25 -11.39 6.64 99.48 0.66 -10.73 16 26 C 0.14 4.06 6.24 86.36 0.54 4.59 16 27 C -0.13 -2.85 4.96 30.67 0.15 -2.70 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.55 6.17 -2.38 -0.01 1.54 16 31 H 0.41 5.36 5.37 -92.71 -0.50 4.86 16 32 H 0.20 -0.25 6.49 -2.91 -0.02 -0.27 16 33 H 0.24 -2.60 8.06 -2.91 -0.02 -2.62 16 34 H 0.23 -0.47 8.06 -2.91 -0.02 -0.49 16 35 H 0.06 2.47 6.20 -2.39 -0.01 2.46 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.03 1.55 4.50 -2.39 -0.01 1.54 16 38 H 0.03 1.08 6.67 -2.39 -0.02 1.06 16 39 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 40 H 0.07 1.98 7.93 -2.39 -0.02 1.96 16 41 H 0.05 1.20 6.94 -2.39 -0.02 1.18 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -92.57 340.41 4.40 -88.17 By element: Atomic # 1 Polarization: -3.33 SS G_CDS: 0.48 Total: -2.86 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 6.01 Total: 15.00 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -3.71 Total: -128.59 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.67 Total: 48.81 kcal Total: -92.57 4.40 -88.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045449992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.050 kcal (2) G-P(sol) polarization free energy of solvation -92.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds