Wall clock time and date at job start Tue Mar 31 2020 04:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.46126 * 2 1 4 4 C 1.34775 * 120.00033 * 60.02930 * 3 2 1 5 5 O 1.21521 * 119.99883 * 359.97438 * 4 3 2 6 6 C 1.48116 * 119.99947 * 180.27708 * 4 3 2 7 7 C 1.39826 * 119.37470 * 179.45051 * 6 4 3 8 8 C 1.36963 * 119.60900 * 179.74511 * 7 6 4 9 9 C 1.39815 * 118.25299 * 0.49326 * 8 7 6 10 10 N 1.34645 * 135.00695 * 179.76742 * 9 8 7 11 11 N 1.28673 * 109.16445 * 180.02562 * 10 9 8 12 12 N 1.28774 * 111.84115 * 359.97438 * 11 10 9 13 13 H 0.97005 * 125.85637 * 180.02562 * 12 11 10 14 14 C 1.37253 * 108.28104 * 359.97438 * 12 11 10 15 15 N 1.31958 * 134.70099 * 180.02562 * 14 12 11 16 16 C 1.53047 * 109.44938 * 119.96579 * 2 1 3 17 17 C 1.53201 * 109.31217 * 181.38149 * 16 2 1 18 18 N 1.46928 * 108.77080 * 305.36100 * 17 16 2 19 19 C 1.36939 * 120.62932 * 233.62875 * 18 17 16 20 20 H 1.08003 * 119.99739 * 27.66657 * 19 18 17 21 21 C 1.38808 * 119.99830 * 207.66216 * 19 18 17 22 22 N 1.31619 * 120.00279 * 17.37908 * 21 19 18 23 23 Si 1.86804 * 120.00030 * 197.37312 * 21 19 18 24 24 H 1.48500 * 109.46949 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47166 * 120.00362 * 23 21 19 26 26 H 1.48502 * 109.47028 * 240.00389 * 23 21 19 27 27 C 1.46924 * 118.73656 * 53.61565 * 18 17 16 28 28 C 1.53039 * 109.46252 * 240.02760 * 2 1 3 29 29 H 1.08999 * 109.47231 * 59.99942 * 1 2 3 30 30 H 1.09000 * 109.47184 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47145 * 300.00141 * 1 2 3 32 32 H 0.97001 * 119.99931 * 240.02432 * 3 2 1 33 33 H 1.08004 * 120.19232 * 359.97438 * 7 6 4 34 34 H 1.08006 * 120.87537 * 180.24453 * 8 7 6 35 35 H 1.09003 * 109.49337 * 301.32879 * 16 2 1 36 36 H 1.08997 * 109.49585 * 61.42757 * 16 2 1 37 37 H 1.08994 * 109.57964 * 185.58078 * 17 16 2 38 38 H 1.08991 * 109.58540 * 65.15095 * 17 16 2 39 39 H 0.96999 * 120.00315 * 179.97438 * 22 21 19 40 40 H 1.09001 * 109.58388 * 186.59935 * 27 18 17 41 41 H 1.08994 * 109.70898 * 66.24499 * 27 18 17 42 42 H 1.09000 * 109.49900 * 298.58022 * 28 2 1 43 43 H 1.09001 * 109.49903 * 58.64304 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6928 2.2110 1.0111 5 8 0.9943 1.8133 1.9225 6 6 2.1812 3.6093 1.0080 7 6 1.8263 4.4621 2.0577 8 6 2.2796 5.7545 2.0624 9 6 3.0811 6.1786 0.9982 10 7 3.6882 7.3332 0.6645 11 7 4.3156 7.1745 -0.4476 12 7 4.1816 5.9789 -0.9069 13 1 4.5686 5.6394 -1.7291 14 6 3.3984 5.2672 -0.0330 15 7 2.9431 4.0294 0.0087 16 6 2.0395 -0.7208 1.2502 17 6 3.5711 -0.6889 1.2646 18 7 4.0676 -1.2493 0.0004 19 6 4.9753 -2.2746 0.0006 20 1 5.0079 -2.9668 0.8290 21 6 5.8534 -2.4243 -1.0640 22 7 6.0602 -1.4227 -1.8924 23 14 6.7419 -4.0473 -1.3208 24 1 6.3386 -5.0056 -0.2605 25 1 6.3844 -4.6023 -2.6510 26 1 8.2086 -3.8245 -1.2554 27 6 3.5714 -0.6890 -1.2639 28 6 2.0398 -0.7209 -1.2500 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.5754 1.6988 -0.7277 33 1 1.2015 4.1026 2.8620 34 1 2.0213 6.4296 2.8649 35 1 1.6569 -0.2206 2.1399 36 1 1.6973 -1.7556 1.2384 37 1 3.9411 -1.2849 2.0988 38 1 3.9141 0.3405 1.3677 39 1 6.6741 -1.5271 -2.6361 40 1 3.9416 -1.2850 -2.0980 41 1 3.9144 0.3401 -1.3696 42 1 1.6976 -1.7557 -1.2382 43 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045459526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:08 Heat of formation + Delta-G solvation = 119.772286 kcal Electronic energy + Delta-G solvation = -28713.542972 eV Core-core repulsion = 24796.917324 eV Total energy + Delta-G solvation = -3916.625648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.65909 -40.55821 -39.04776 -37.27695 -34.67177 -34.42372 -32.51234 -31.86487 -31.27885 -30.49794 -29.92656 -27.46447 -25.97762 -24.30264 -24.03898 -23.02260 -22.36272 -21.74759 -20.65100 -19.23527 -18.78476 -18.58269 -17.99203 -16.88241 -16.84011 -15.68175 -15.11932 -14.98589 -14.89304 -14.50790 -13.93999 -13.79716 -13.53115 -13.45000 -13.39619 -13.14450 -13.01789 -12.66876 -12.42404 -12.09774 -11.96876 -11.87340 -11.68924 -11.35469 -11.25307 -10.97811 -10.76737 -10.42689 -10.36359 -10.22148 -9.91096 -9.83342 -9.67009 -9.55916 -9.36503 -9.27009 -8.72209 -8.49622 -6.69763 -5.82938 -3.23922 -0.16494 0.67360 1.81440 1.84465 2.65821 3.12732 3.34192 3.42739 3.44707 3.45006 3.54578 3.93462 4.07430 4.46679 4.47306 4.57553 5.05065 5.12018 5.23558 5.32349 5.37687 5.43606 5.47498 5.57307 5.58712 5.93799 5.95769 6.00865 6.14718 6.23945 6.27842 6.29370 6.36186 6.49674 6.60107 6.65120 6.77971 6.89914 6.99494 7.10108 7.25974 7.55861 7.74753 7.78301 7.81565 8.30270 8.41333 9.18043 9.81668 10.38374 11.25660 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.003637 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.003394 B = 7696.572596 C = 9023.782075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.180 3.820 3 N -0.682 5.682 4 C 0.570 3.430 5 O -0.526 6.526 6 C 0.156 3.844 7 C -0.122 4.122 8 C -0.004 4.004 9 C -0.026 4.026 10 N -0.241 5.241 11 N 0.009 4.991 12 N -0.400 5.400 13 H 0.461 0.539 14 C 0.218 3.782 15 N -0.441 5.441 16 C -0.143 4.143 17 C 0.149 3.851 18 N -0.590 5.590 19 C -0.249 4.249 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.171 3.829 28 C -0.146 4.146 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.411 0.589 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.014 0.986 39 H 0.252 0.748 40 H 0.090 0.910 41 H 0.016 0.984 42 H 0.073 0.927 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 12.708 2.905 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 N -0.332 5.332 4 C 0.353 3.647 5 O -0.403 6.403 6 C 0.001 3.999 7 C -0.146 4.146 8 C -0.035 4.035 9 C -0.154 4.154 10 N -0.118 5.118 11 N 0.025 4.975 12 N -0.132 5.132 13 H 0.309 0.691 14 C -0.026 4.026 15 N -0.157 5.157 16 C -0.183 4.183 17 C 0.023 3.977 18 N -0.313 5.313 19 C -0.379 4.379 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.731 3.269 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.045 3.955 28 C -0.185 4.185 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.248 0.752 33 H 0.185 0.815 34 H 0.177 0.823 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.034 0.966 42 H 0.092 0.908 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.507 13.257 2.511 16.506 hybrid contribution 0.625 -1.271 -0.529 1.512 sum -8.883 11.985 1.982 15.049 Atomic orbital electron populations 1.22230 0.95073 1.02173 1.02429 1.20409 0.92834 0.79584 0.97624 1.46081 1.51180 1.11823 1.24161 1.17606 0.80773 0.83266 0.83021 1.90735 1.38159 1.75465 1.35913 1.21461 0.93032 0.95551 0.89875 1.21760 1.00517 0.92603 0.99678 1.20504 0.92172 0.95531 0.95313 1.20675 1.03783 0.92317 0.98614 1.75396 1.09781 1.20930 1.05713 1.78103 1.14473 0.98790 1.06106 1.44715 1.38546 1.08023 1.21909 0.69060 1.19802 0.98589 0.92050 0.92170 1.66329 1.10130 1.13091 1.26152 1.22415 0.99030 0.99827 0.97025 1.20844 0.90854 0.96088 0.89919 1.44045 1.48269 1.39614 0.99398 1.19250 1.09705 1.02852 1.06066 0.91634 1.25006 0.97229 0.97442 0.99981 1.70031 1.37853 1.28989 1.18032 0.86249 0.79147 0.83786 0.77768 1.20245 1.21585 1.21805 1.20745 0.86800 0.97166 0.90798 1.22528 1.01504 1.00059 0.94440 0.93233 0.91945 0.90799 0.75214 0.81524 0.82346 0.90752 0.91530 0.92994 0.96835 0.93778 0.89218 0.96558 0.90792 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 8.40 37.15 0.31 -1.95 16 2 C 0.18 2.91 0.66 -131.78 -0.09 2.82 16 3 N -0.68 -10.55 4.09 -48.42 -0.20 -10.75 16 4 C 0.57 8.50 7.23 -12.21 -0.09 8.41 16 5 O -0.53 -8.45 12.50 5.35 0.07 -8.39 16 6 C 0.16 2.04 6.74 -82.93 -0.56 1.48 16 7 C -0.12 -1.26 9.55 -39.45 -0.38 -1.64 16 8 C 0.00 -0.04 10.16 -39.45 -0.40 -0.44 16 9 C -0.03 -0.31 7.38 -84.91 -0.63 -0.94 16 10 N -0.24 -3.04 12.43 32.12 0.40 -2.64 16 11 N 0.01 0.10 13.28 60.35 0.80 0.90 16 12 N -0.40 -4.14 7.06 31.13 0.22 -3.92 16 13 H 0.46 3.28 8.96 -190.25 -1.71 1.57 16 14 C 0.22 2.71 8.56 -156.28 -1.34 1.38 16 15 N -0.44 -5.88 9.54 -8.90 -0.08 -5.97 16 16 C -0.14 -2.55 4.67 -26.60 -0.12 -2.67 16 17 C 0.15 3.15 6.26 -3.71 -0.02 3.12 16 18 N -0.59 -14.25 2.99 -172.32 -0.52 -14.77 16 19 C -0.25 -6.69 9.58 -15.06 -0.14 -6.83 16 20 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 21 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 22 N -0.90 -25.41 11.19 55.49 0.62 -24.79 16 23 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 27 C 0.17 3.79 5.03 -3.71 -0.02 3.77 16 28 C -0.15 -2.54 4.96 -26.61 -0.13 -2.68 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.09 6.16 -51.93 -0.32 0.77 16 32 H 0.41 6.43 6.58 -40.82 -0.27 6.16 16 33 H 0.17 1.44 7.61 -52.48 -0.40 1.04 16 34 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.07 1.31 6.20 -51.93 -0.32 0.99 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 38 H 0.01 0.30 7.74 -51.93 -0.40 -0.10 16 39 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.09 2.26 6.03 -51.93 -0.31 1.95 16 41 H 0.02 0.38 6.94 -51.93 -0.36 0.02 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -31.13 347.20 -8.77 -39.90 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.59 Total: 5.14 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -3.69 Total: 3.79 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 1.24 Total: -61.94 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.07 Total: -8.39 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.13 -8.77 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045459526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.668 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds