Wall clock time and date at job start Tue Mar 31 2020 04:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.46126 * 2 1 4 4 C 1.34775 * 120.00033 * 60.02930 * 3 2 1 5 5 O 1.21521 * 119.99883 * 359.97438 * 4 3 2 6 6 C 1.48116 * 119.99947 * 180.27708 * 4 3 2 7 7 C 1.39826 * 119.37470 * 179.45051 * 6 4 3 8 8 C 1.36963 * 119.60900 * 179.74511 * 7 6 4 9 9 C 1.39815 * 118.25299 * 0.49326 * 8 7 6 10 10 N 1.34645 * 135.00695 * 179.76742 * 9 8 7 11 11 N 1.28673 * 109.16445 * 180.02562 * 10 9 8 12 12 N 1.28774 * 111.84115 * 359.97438 * 11 10 9 13 13 H 0.97005 * 125.85637 * 180.02562 * 12 11 10 14 14 C 1.37253 * 108.28104 * 359.97438 * 12 11 10 15 15 N 1.31958 * 134.70099 * 180.02562 * 14 12 11 16 16 C 1.53047 * 109.44938 * 119.96579 * 2 1 3 17 17 C 1.53201 * 109.31217 * 181.38149 * 16 2 1 18 18 N 1.46928 * 108.77080 * 305.36100 * 17 16 2 19 19 C 1.36939 * 120.62932 * 233.62875 * 18 17 16 20 20 H 1.08003 * 119.99739 * 27.66657 * 19 18 17 21 21 C 1.38808 * 119.99830 * 207.66216 * 19 18 17 22 22 N 1.31619 * 120.00279 * 17.37908 * 21 19 18 23 23 Si 1.86804 * 120.00030 * 197.37312 * 21 19 18 24 24 H 1.48500 * 109.46949 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47166 * 120.00362 * 23 21 19 26 26 H 1.48502 * 109.47028 * 240.00389 * 23 21 19 27 27 C 1.46924 * 118.73656 * 53.61565 * 18 17 16 28 28 C 1.53039 * 109.46252 * 240.02760 * 2 1 3 29 29 H 1.08999 * 109.47231 * 59.99942 * 1 2 3 30 30 H 1.09000 * 109.47184 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47145 * 300.00141 * 1 2 3 32 32 H 0.97001 * 119.99931 * 240.02432 * 3 2 1 33 33 H 1.08004 * 120.19232 * 359.97438 * 7 6 4 34 34 H 1.08006 * 120.87537 * 180.24453 * 8 7 6 35 35 H 1.09003 * 109.49337 * 301.32879 * 16 2 1 36 36 H 1.08997 * 109.49585 * 61.42757 * 16 2 1 37 37 H 1.08994 * 109.57964 * 185.58078 * 17 16 2 38 38 H 1.08991 * 109.58540 * 65.15095 * 17 16 2 39 39 H 0.96999 * 120.00315 * 179.97438 * 22 21 19 40 40 H 1.09001 * 109.58388 * 186.59935 * 27 18 17 41 41 H 1.08994 * 109.70898 * 66.24499 * 27 18 17 42 42 H 1.09000 * 109.49900 * 298.58022 * 28 2 1 43 43 H 1.09001 * 109.49903 * 58.64304 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6928 2.2110 1.0111 5 8 0.9943 1.8133 1.9225 6 6 2.1812 3.6093 1.0080 7 6 1.8263 4.4621 2.0577 8 6 2.2796 5.7545 2.0624 9 6 3.0811 6.1786 0.9982 10 7 3.6882 7.3332 0.6645 11 7 4.3156 7.1745 -0.4476 12 7 4.1816 5.9789 -0.9069 13 1 4.5686 5.6394 -1.7291 14 6 3.3984 5.2672 -0.0330 15 7 2.9431 4.0294 0.0087 16 6 2.0395 -0.7208 1.2502 17 6 3.5711 -0.6889 1.2646 18 7 4.0676 -1.2493 0.0004 19 6 4.9753 -2.2746 0.0006 20 1 5.0079 -2.9668 0.8290 21 6 5.8534 -2.4243 -1.0640 22 7 6.0602 -1.4227 -1.8924 23 14 6.7419 -4.0473 -1.3208 24 1 6.3386 -5.0056 -0.2605 25 1 6.3844 -4.6023 -2.6510 26 1 8.2086 -3.8245 -1.2554 27 6 3.5714 -0.6890 -1.2639 28 6 2.0398 -0.7209 -1.2500 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.5754 1.6988 -0.7277 33 1 1.2015 4.1026 2.8620 34 1 2.0213 6.4296 2.8649 35 1 1.6569 -0.2206 2.1399 36 1 1.6973 -1.7556 1.2384 37 1 3.9411 -1.2849 2.0988 38 1 3.9141 0.3405 1.3677 39 1 6.6741 -1.5271 -2.6361 40 1 3.9416 -1.2850 -2.0980 41 1 3.9144 0.3401 -1.3696 42 1 1.6976 -1.7557 -1.2382 43 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045459526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:08 Heat of formation + Delta-G solvation = 98.841828 kcal Electronic energy + Delta-G solvation = -28714.450584 eV Core-core repulsion = 24796.917324 eV Total energy + Delta-G solvation = -3917.533261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.54733 -41.72799 -40.13718 -38.64853 -36.15735 -35.46272 -33.83914 -33.04173 -32.59799 -31.75585 -31.45712 -29.06820 -26.94755 -25.91849 -25.10785 -23.97611 -23.90620 -23.02660 -22.14401 -20.30368 -19.98332 -19.59751 -19.07703 -18.64535 -17.78488 -16.87518 -16.65255 -16.35584 -16.14637 -15.79687 -15.50474 -15.21418 -14.89345 -14.65331 -14.58846 -14.39402 -14.20022 -13.95732 -13.58232 -13.32006 -13.09812 -13.03684 -12.96192 -12.83955 -12.83009 -12.60101 -12.54951 -12.14635 -11.99250 -11.76381 -11.55520 -11.30468 -11.06303 -10.57874 -10.52184 -10.43629 -10.27193 -9.95847 -8.66204 -7.87748 -5.31496 -1.07734 -0.17507 0.87663 0.99702 1.45162 1.48140 1.57888 1.64455 2.03434 2.51017 2.55978 2.56608 3.02467 3.19368 3.27251 3.53848 3.67460 3.71639 3.88679 4.04357 4.14910 4.22994 4.25584 4.49705 4.65550 4.70136 4.73707 4.75679 4.82176 4.92509 4.93743 4.99712 5.15941 5.17355 5.21692 5.32281 5.38667 5.48050 5.51324 5.63915 5.65219 5.76877 6.15973 6.39265 6.57659 6.90228 7.11532 7.16108 7.86695 8.38235 9.18186 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.003637 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.003394 B = 7696.572596 C = 9023.782075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.183 3.817 3 N -0.687 5.687 4 C 0.571 3.429 5 O -0.539 6.539 6 C 0.139 3.861 7 C -0.115 4.115 8 C 0.012 3.988 9 C -0.035 4.035 10 N -0.257 5.257 11 N 0.007 4.993 12 N -0.388 5.388 13 H 0.472 0.528 14 C 0.201 3.799 15 N -0.458 5.458 16 C -0.131 4.131 17 C 0.151 3.849 18 N -0.606 5.606 19 C -0.262 4.262 20 H 0.062 0.938 21 C -0.045 4.045 22 N -0.931 5.931 23 Si 0.962 3.038 24 H -0.269 1.269 25 H -0.288 1.288 26 H -0.295 1.295 27 C 0.179 3.821 28 C -0.132 4.132 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.409 0.591 33 H 0.187 0.813 34 H 0.197 0.803 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.002 0.998 39 H 0.249 0.751 40 H 0.056 0.944 41 H 0.002 0.998 42 H 0.073 0.927 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.432 13.142 3.599 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.097 3.903 3 N -0.337 5.337 4 C 0.355 3.645 5 O -0.416 6.416 6 C -0.015 4.015 7 C -0.139 4.139 8 C -0.019 4.019 9 C -0.163 4.163 10 N -0.133 5.133 11 N 0.023 4.977 12 N -0.122 5.122 13 H 0.323 0.677 14 C -0.043 4.043 15 N -0.175 5.175 16 C -0.170 4.170 17 C 0.025 3.975 18 N -0.329 5.329 19 C -0.392 4.392 20 H 0.080 0.920 21 C -0.241 4.241 22 N -0.577 5.577 23 Si 0.791 3.209 24 H -0.194 1.194 25 H -0.215 1.215 26 H -0.222 1.222 27 C 0.053 3.947 28 C -0.171 4.171 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.245 0.755 33 H 0.204 0.796 34 H 0.214 0.786 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.020 0.980 42 H 0.092 0.908 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.962 13.695 3.209 17.833 hybrid contribution 1.123 -1.342 -0.716 1.891 sum -9.840 12.353 2.492 15.988 Atomic orbital electron populations 1.22123 0.92748 1.03099 1.02878 1.20345 0.94409 0.79712 0.95784 1.46076 1.51436 1.11643 1.24528 1.17824 0.80298 0.83908 0.82425 1.90717 1.38707 1.76007 1.36153 1.21359 0.93979 0.95049 0.91071 1.21944 1.00339 0.92462 0.99165 1.20927 0.90274 0.95522 0.95159 1.21059 1.04057 0.91931 0.99218 1.75377 1.10425 1.21382 1.06144 1.78052 1.14393 0.99146 1.06093 1.44755 1.37896 1.07498 1.22047 0.67707 1.19967 0.99300 0.92068 0.92999 1.66217 1.10763 1.13712 1.26798 1.22262 0.96134 1.00327 0.98306 1.20876 0.93187 0.94921 0.88496 1.44276 1.48245 1.39479 1.00908 1.19517 1.10149 1.03527 1.06020 0.92028 1.25681 0.98256 1.00193 0.99969 1.70168 1.38592 1.30564 1.18423 0.85283 0.77558 0.80399 0.77652 1.19373 1.21459 1.22205 1.20565 0.89863 0.95327 0.88927 1.22330 0.97664 1.00723 0.96394 0.91876 0.90793 0.91237 0.75465 0.79596 0.78586 0.90217 0.91378 0.93787 0.97959 0.94153 0.92584 0.97972 0.90821 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 8.40 71.98 0.60 -3.24 16 2 C 0.18 5.64 0.66 3.63 0.00 5.64 16 3 N -0.69 -20.71 4.09 -425.38 -1.74 -22.45 16 4 C 0.57 16.39 7.23 86.87 0.63 17.02 16 5 O -0.54 -16.42 12.50 -3.78 -0.05 -16.46 16 6 C 0.14 3.49 6.74 42.05 0.28 3.77 16 7 C -0.12 -2.13 9.55 22.35 0.21 -1.91 16 8 C 0.01 0.19 10.16 22.35 0.23 0.41 16 9 C -0.03 -0.78 7.38 39.83 0.29 -0.49 16 10 N -0.26 -6.15 12.43 -52.30 -0.65 -6.80 16 11 N 0.01 0.15 13.28 37.02 0.49 0.64 16 12 N -0.39 -7.82 7.06 -55.42 -0.39 -8.21 16 13 H 0.47 6.59 8.96 -219.83 -1.97 4.62 16 14 C 0.20 4.86 8.56 134.30 1.15 6.01 16 15 N -0.46 -12.01 9.54 -182.08 -1.74 -13.75 16 16 C -0.13 -4.52 4.67 30.68 0.14 -4.37 16 17 C 0.15 6.40 6.26 86.36 0.54 6.94 16 18 N -0.61 -29.65 2.99 -699.11 -2.09 -31.74 16 19 C -0.26 -14.25 9.58 84.03 0.81 -13.45 16 20 H 0.06 3.33 7.89 -2.91 -0.02 3.31 16 21 C -0.05 -2.49 4.91 84.86 0.42 -2.07 16 22 N -0.93 -53.50 11.19 21.65 0.24 -53.26 16 23 Si 0.96 44.27 29.59 68.60 2.03 46.30 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 27 C 0.18 8.05 5.03 86.36 0.43 8.48 16 28 C -0.13 -4.47 4.96 30.67 0.15 -4.32 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.88 6.16 -2.39 -0.01 1.86 16 32 H 0.41 12.74 6.58 -92.71 -0.61 12.13 16 33 H 0.19 2.67 7.61 -2.91 -0.02 2.65 16 34 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.08 2.70 6.20 -2.39 -0.01 2.68 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.04 1.89 7.93 -2.39 -0.02 1.87 16 38 H 0.00 0.11 7.74 -2.39 -0.02 0.09 16 39 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 40 H 0.06 2.90 6.03 -2.39 -0.01 2.89 16 41 H 0.00 0.11 6.94 -2.39 -0.02 0.09 16 42 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -67.22 347.20 0.51 -66.71 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -1.49 Total: 20.59 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 5.90 Total: 18.43 kcal Atomic # 7 Polarization: -129.69 SS G_CDS: -5.88 Total: -135.57 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.05 Total: -16.46 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -67.22 0.51 -66.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045459526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.552 kcal (2) G-P(sol) polarization free energy of solvation -67.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds