Wall clock time and date at job start Tue Mar 31 2020 04:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46181 * 2 1 4 4 C 1.34780 * 119.99734 * 59.72328 * 3 2 1 5 5 O 1.21567 * 120.00103 * 0.28124 * 4 3 2 6 6 C 1.47722 * 119.99643 * 180.27827 * 4 3 2 7 7 C 1.40113 * 120.35477 * 359.72347 * 6 4 3 8 8 N 1.31265 * 121.14868 * 179.75847 * 7 6 4 9 9 C 1.32714 * 121.79972 * 0.51798 * 8 7 6 10 10 N 1.37121 * 133.40131 * 179.77955 * 9 8 7 11 11 H 0.96996 * 126.59379 * 359.97141 * 10 9 8 12 12 N 1.40193 * 106.81632 * 179.97438 * 10 9 8 13 13 N 1.28671 * 109.51131 * 359.97438 * 12 10 9 14 14 C 1.35329 * 109.99779 * 359.97438 * 13 12 10 15 15 C 1.39431 * 120.34631 * 180.02562 * 6 4 3 16 16 C 1.53039 * 109.46455 * 119.97683 * 2 1 3 17 17 C 1.53164 * 109.33102 * 181.38735 * 16 2 1 18 18 N 1.46925 * 108.76621 * 305.35499 * 17 16 2 19 19 C 1.36938 * 120.62659 * 233.63392 * 18 17 16 20 20 H 1.07998 * 119.99905 * 151.81009 * 19 18 17 21 21 C 1.38809 * 120.00043 * 331.80550 * 19 18 17 22 22 N 1.31620 * 119.99917 * 343.08253 * 21 19 18 23 23 Si 1.86808 * 120.00053 * 163.08405 * 21 19 18 24 24 H 1.48502 * 109.46988 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46809 * 119.99956 * 23 21 19 26 26 H 1.48500 * 109.46564 * 240.00005 * 23 21 19 27 27 C 1.46918 * 118.74114 * 53.60482 * 18 17 16 28 28 C 1.53044 * 109.46089 * 240.02776 * 2 1 3 29 29 H 1.08999 * 109.47647 * 59.99980 * 1 2 3 30 30 H 1.08999 * 109.46768 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46925 * 299.99523 * 1 2 3 32 32 H 0.97002 * 119.99831 * 240.00638 * 3 2 1 33 33 H 1.08001 * 119.42413 * 0.02562 * 7 6 4 34 34 H 1.07996 * 120.95544 * 359.95473 * 15 6 4 35 35 H 1.09010 * 109.49053 * 301.32243 * 16 2 1 36 36 H 1.08992 * 109.50104 * 61.41597 * 16 2 1 37 37 H 1.08994 * 109.58969 * 185.56480 * 17 16 2 38 38 H 1.09002 * 109.70655 * 65.20820 * 17 16 2 39 39 H 0.97006 * 119.99658 * 179.97438 * 22 21 19 40 40 H 1.09006 * 109.58850 * 186.60742 * 27 18 17 41 41 H 1.09006 * 109.70689 * 66.25331 * 27 18 17 42 42 H 1.09003 * 109.49744 * 298.58313 * 28 2 1 43 43 H 1.09005 * 109.49461 * 58.64142 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6877 2.2127 1.0080 5 8 0.9889 1.8149 1.9198 6 6 2.1748 3.6073 1.0049 7 6 2.9854 4.0718 -0.0393 8 7 3.4231 5.3092 -0.0602 9 6 3.1294 6.1712 0.9052 10 7 3.4515 7.4859 1.1245 11 1 3.9979 8.0501 0.5552 12 7 2.8394 7.8579 2.3296 13 7 2.1936 6.8546 2.8112 14 6 2.3238 5.7845 1.9931 15 6 1.8379 4.4735 2.0443 16 6 2.0399 -0.7210 1.2499 17 6 3.5712 -0.6889 1.2644 18 7 4.0677 -1.2492 0.0002 19 6 4.9753 -2.2746 0.0003 20 1 5.0026 -2.9716 -0.8241 21 6 5.8603 -2.4179 1.0600 22 7 6.0656 -1.4143 1.8864 23 14 6.7600 -4.0354 1.3134 24 1 6.3574 -4.9967 0.2555 25 1 8.2250 -3.8037 1.2395 26 1 6.4132 -4.5911 2.6460 27 6 3.5714 -0.6890 -1.2641 28 6 2.0398 -0.7209 -1.2500 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.5756 1.6986 -0.7276 33 1 3.2513 3.4013 -0.8431 34 1 1.2182 4.1425 2.8645 35 1 1.6574 -0.2208 2.1398 36 1 1.6977 -1.7557 1.2382 37 1 3.9412 -1.2848 2.0986 38 1 3.9163 0.3397 1.3687 39 1 6.6838 -1.5146 2.6272 40 1 3.9416 -1.2850 -2.0982 41 1 3.9144 0.3403 -1.3698 42 1 1.6975 -1.7557 -1.2383 43 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045461079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:05 Heat of formation + Delta-G solvation = 117.709240 kcal Electronic energy + Delta-G solvation = -28593.211094 eV Core-core repulsion = 24676.495986 eV Total energy + Delta-G solvation = -3916.715108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.65264 -40.42598 -38.77955 -37.30943 -34.54435 -34.24672 -32.45126 -31.94306 -31.24505 -30.14576 -29.92626 -27.47342 -25.25582 -24.68482 -24.06765 -22.97438 -22.34166 -21.56415 -20.69156 -19.05027 -18.86978 -18.60479 -17.24977 -16.67650 -16.60574 -16.40308 -15.01440 -14.82328 -14.75640 -14.40231 -13.97126 -13.80768 -13.56440 -13.46134 -13.35383 -13.27956 -13.02992 -12.84510 -12.42148 -12.26940 -11.96759 -11.76665 -11.65700 -11.44071 -11.17732 -10.97955 -10.75939 -10.45704 -10.28647 -10.20443 -9.98074 -9.76799 -9.63772 -9.61911 -9.32671 -9.22966 -8.70875 -8.48291 -6.69192 -5.80752 -3.24072 -0.09231 0.38408 1.68722 1.76574 2.72120 3.10232 3.35803 3.44109 3.45588 3.53900 3.58428 3.94390 3.98148 4.35220 4.42106 4.47685 4.75157 5.01366 5.20828 5.31120 5.35403 5.42336 5.47266 5.55200 5.57257 5.82601 5.90770 5.95184 6.07853 6.14386 6.30243 6.33693 6.39390 6.47411 6.62057 6.67954 6.74453 6.86548 6.99457 7.16023 7.38128 7.44543 7.66744 7.71600 7.78726 8.34174 8.42965 9.19232 9.82550 10.38494 11.27103 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.003360 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.273929 B = 8331.413836 C = 9241.152207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.185 3.815 3 N -0.702 5.702 4 C 0.571 3.429 5 O -0.528 6.528 6 C -0.199 4.199 7 C 0.217 3.783 8 N -0.489 5.489 9 C 0.293 3.707 10 N -0.484 5.484 11 H 0.454 0.546 12 N 0.015 4.985 13 N -0.191 5.191 14 C -0.075 4.075 15 C 0.082 3.918 16 C -0.152 4.152 17 C 0.177 3.823 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.145 3.855 28 C -0.138 4.138 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.396 0.604 33 H 0.179 0.821 34 H 0.167 0.833 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.016 0.984 39 H 0.253 0.747 40 H 0.056 0.944 41 H 0.013 0.987 42 H 0.076 0.924 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.022 13.064 -5.752 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.100 3.900 3 N -0.353 5.353 4 C 0.356 3.644 5 O -0.405 6.405 6 C -0.208 4.208 7 C 0.044 3.956 8 N -0.203 5.203 9 C 0.048 3.952 10 N -0.210 5.210 11 H 0.302 0.698 12 N 0.032 4.968 13 N -0.072 5.072 14 C -0.200 4.200 15 C 0.051 3.949 16 C -0.191 4.191 17 C 0.051 3.949 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.544 5.544 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.018 3.982 28 C -0.178 4.178 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.232 0.768 33 H 0.196 0.804 34 H 0.184 0.816 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.034 0.966 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.030 0.970 42 H 0.095 0.905 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.122 14.238 -4.574 17.517 hybrid contribution 1.031 -1.209 -0.619 1.705 sum -8.091 13.030 -5.193 16.192 Atomic orbital electron populations 1.22237 0.95156 1.02109 1.02431 1.20338 0.92718 0.79446 0.97499 1.46003 1.52529 1.12304 1.24442 1.17557 0.80442 0.83764 0.82587 1.90737 1.38049 1.76385 1.35345 1.20917 1.04953 0.96712 0.98210 1.23117 0.87611 0.89524 0.95350 1.66695 1.25272 1.02977 1.25335 1.19595 0.95008 0.87403 0.93173 1.47509 1.43983 1.08093 1.21379 0.69843 1.81721 1.05903 1.17195 0.92001 1.74885 1.13304 0.96871 1.22172 1.20399 1.07047 0.96431 0.96136 1.21085 0.90615 0.87163 0.96002 1.22590 1.00813 0.99244 0.96495 1.20690 0.87212 0.96983 0.90012 1.44067 1.48328 1.39580 0.99372 1.19197 1.09677 1.02845 1.06666 0.91704 1.25038 0.97192 0.97340 0.99903 1.70043 1.37363 1.28945 1.18069 0.86265 0.79195 0.83727 0.77814 1.20259 1.21785 1.21556 1.20864 0.90410 0.96170 0.90719 1.22357 0.99702 1.00685 0.95034 0.93364 0.92066 0.90686 0.76836 0.80421 0.81560 0.90941 0.92014 0.89777 0.96552 0.93709 0.92544 0.96967 0.90500 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.40 37.16 0.31 -1.87 16 2 C 0.18 2.80 0.66 -131.78 -0.09 2.71 16 3 N -0.70 -9.51 4.06 -48.54 -0.20 -9.71 16 4 C 0.57 8.15 7.19 -12.38 -0.09 8.06 16 5 O -0.53 -8.93 12.61 5.31 0.07 -8.86 16 6 C -0.20 -2.42 5.88 -104.87 -0.62 -3.03 16 7 C 0.22 2.33 10.69 -17.09 -0.18 2.15 16 8 N -0.49 -5.63 10.37 -12.03 -0.12 -5.76 16 9 C 0.29 3.44 8.49 -155.93 -1.32 2.12 16 10 N -0.48 -4.65 7.53 31.15 0.23 -4.42 16 11 H 0.45 2.70 8.96 -182.53 -1.64 1.06 16 12 N 0.01 0.17 13.82 60.35 0.83 1.01 16 13 N -0.19 -2.47 12.40 32.17 0.40 -2.07 16 14 C -0.07 -0.94 7.27 -84.74 -0.62 -1.56 16 15 C 0.08 1.00 9.75 -38.51 -0.38 0.62 16 16 C -0.15 -2.86 4.67 -26.63 -0.12 -2.98 16 17 C 0.18 4.05 5.04 -3.73 -0.02 4.03 16 18 N -0.59 -13.76 2.99 -172.34 -0.52 -14.28 16 19 C -0.25 -6.68 9.58 -15.06 -0.14 -6.83 16 20 H 0.07 1.68 7.88 -52.49 -0.41 1.26 16 21 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 22 N -0.90 -25.65 11.20 55.49 0.62 -25.03 16 23 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.15 2.65 6.24 -3.72 -0.02 2.62 16 28 C -0.14 -2.03 4.96 -26.61 -0.13 -2.17 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.12 6.15 -51.93 -0.32 0.80 16 32 H 0.40 4.52 5.30 -40.82 -0.22 4.30 16 33 H 0.18 1.43 6.39 -52.49 -0.34 1.10 16 34 H 0.17 1.90 7.71 -52.49 -0.40 1.49 16 35 H 0.07 1.42 6.21 -51.92 -0.32 1.10 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.08 2.25 6.06 -51.93 -0.31 1.93 16 38 H 0.02 0.40 7.74 -51.93 -0.40 -0.01 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.06 1.02 7.93 -51.93 -0.41 0.61 16 41 H 0.01 0.22 6.94 -51.93 -0.36 -0.15 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -31.92 345.94 -8.39 -40.31 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.39 Total: 3.42 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -3.51 Total: 3.91 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: 1.25 Total: -60.26 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.07 Total: -8.86 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.92 -8.39 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045461079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.019 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds