Wall clock time and date at job start Tue Mar 31 2020 04:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46181 * 2 1 4 4 C 1.34780 * 119.99734 * 59.72328 * 3 2 1 5 5 O 1.21567 * 120.00103 * 0.28124 * 4 3 2 6 6 C 1.47722 * 119.99643 * 180.27827 * 4 3 2 7 7 C 1.40113 * 120.35477 * 359.72347 * 6 4 3 8 8 N 1.31265 * 121.14868 * 179.75847 * 7 6 4 9 9 C 1.32714 * 121.79972 * 0.51798 * 8 7 6 10 10 N 1.37121 * 133.40131 * 179.77955 * 9 8 7 11 11 H 0.96996 * 126.59379 * 359.97141 * 10 9 8 12 12 N 1.40193 * 106.81632 * 179.97438 * 10 9 8 13 13 N 1.28671 * 109.51131 * 359.97438 * 12 10 9 14 14 C 1.35329 * 109.99779 * 359.97438 * 13 12 10 15 15 C 1.39431 * 120.34631 * 180.02562 * 6 4 3 16 16 C 1.53039 * 109.46455 * 119.97683 * 2 1 3 17 17 C 1.53164 * 109.33102 * 181.38735 * 16 2 1 18 18 N 1.46925 * 108.76621 * 305.35499 * 17 16 2 19 19 C 1.36938 * 120.62659 * 233.63392 * 18 17 16 20 20 H 1.07998 * 119.99905 * 151.81009 * 19 18 17 21 21 C 1.38809 * 120.00043 * 331.80550 * 19 18 17 22 22 N 1.31620 * 119.99917 * 343.08253 * 21 19 18 23 23 Si 1.86808 * 120.00053 * 163.08405 * 21 19 18 24 24 H 1.48502 * 109.46988 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46809 * 119.99956 * 23 21 19 26 26 H 1.48500 * 109.46564 * 240.00005 * 23 21 19 27 27 C 1.46918 * 118.74114 * 53.60482 * 18 17 16 28 28 C 1.53044 * 109.46089 * 240.02776 * 2 1 3 29 29 H 1.08999 * 109.47647 * 59.99980 * 1 2 3 30 30 H 1.08999 * 109.46768 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46925 * 299.99523 * 1 2 3 32 32 H 0.97002 * 119.99831 * 240.00638 * 3 2 1 33 33 H 1.08001 * 119.42413 * 0.02562 * 7 6 4 34 34 H 1.07996 * 120.95544 * 359.95473 * 15 6 4 35 35 H 1.09010 * 109.49053 * 301.32243 * 16 2 1 36 36 H 1.08992 * 109.50104 * 61.41597 * 16 2 1 37 37 H 1.08994 * 109.58969 * 185.56480 * 17 16 2 38 38 H 1.09002 * 109.70655 * 65.20820 * 17 16 2 39 39 H 0.97006 * 119.99658 * 179.97438 * 22 21 19 40 40 H 1.09006 * 109.58850 * 186.60742 * 27 18 17 41 41 H 1.09006 * 109.70689 * 66.25331 * 27 18 17 42 42 H 1.09003 * 109.49744 * 298.58313 * 28 2 1 43 43 H 1.09005 * 109.49461 * 58.64142 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6877 2.2127 1.0080 5 8 0.9889 1.8149 1.9198 6 6 2.1748 3.6073 1.0049 7 6 2.9854 4.0718 -0.0393 8 7 3.4231 5.3092 -0.0602 9 6 3.1294 6.1712 0.9052 10 7 3.4515 7.4859 1.1245 11 1 3.9979 8.0501 0.5552 12 7 2.8394 7.8579 2.3296 13 7 2.1936 6.8546 2.8112 14 6 2.3238 5.7845 1.9931 15 6 1.8379 4.4735 2.0443 16 6 2.0399 -0.7210 1.2499 17 6 3.5712 -0.6889 1.2644 18 7 4.0677 -1.2492 0.0002 19 6 4.9753 -2.2746 0.0003 20 1 5.0026 -2.9716 -0.8241 21 6 5.8603 -2.4179 1.0600 22 7 6.0656 -1.4143 1.8864 23 14 6.7600 -4.0354 1.3134 24 1 6.3574 -4.9967 0.2555 25 1 8.2250 -3.8037 1.2395 26 1 6.4132 -4.5911 2.6460 27 6 3.5714 -0.6890 -1.2641 28 6 2.0398 -0.7209 -1.2500 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.5756 1.6986 -0.7276 33 1 3.2513 3.4013 -0.8431 34 1 1.2182 4.1425 2.8645 35 1 1.6574 -0.2208 2.1398 36 1 1.6977 -1.7557 1.2382 37 1 3.9412 -1.2848 2.0986 38 1 3.9163 0.3397 1.3687 39 1 6.6838 -1.5146 2.6272 40 1 3.9416 -1.2850 -2.0982 41 1 3.9144 0.3403 -1.3698 42 1 1.6975 -1.7557 -1.2383 43 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045461079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:04 Heat of formation + Delta-G solvation = 95.490592 kcal Electronic energy + Delta-G solvation = -28594.174567 eV Core-core repulsion = 24676.495986 eV Total energy + Delta-G solvation = -3917.678581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.56021 -41.59467 -39.82164 -38.62542 -36.12345 -35.18207 -33.82360 -32.98234 -32.66947 -31.54999 -31.18145 -29.01135 -26.23022 -25.86172 -25.56063 -23.88790 -23.86694 -22.85478 -22.04708 -20.29820 -19.84298 -19.67497 -18.78187 -17.89870 -17.62252 -17.31368 -16.80516 -16.22319 -15.95746 -15.66592 -15.38146 -15.12104 -14.89016 -14.80040 -14.62617 -14.38091 -14.15126 -13.93560 -13.76153 -13.24232 -13.18793 -13.15713 -12.91838 -12.81776 -12.69562 -12.53801 -12.46212 -12.16017 -11.90051 -11.69751 -11.47082 -11.24811 -10.96933 -10.54207 -10.49745 -10.49582 -10.29175 -9.91516 -8.60178 -7.82998 -5.27269 -0.99447 -0.56202 0.84285 0.87230 1.46339 1.49704 1.58541 1.68879 2.04223 2.53606 2.54298 2.69309 3.03271 3.07270 3.32524 3.43153 3.55675 3.71097 3.80148 3.97031 4.13716 4.14809 4.21163 4.48731 4.57428 4.65006 4.76211 4.79360 4.87698 4.93910 4.97832 5.03609 5.13968 5.23276 5.28818 5.43787 5.46442 5.58321 5.63994 5.67561 5.71454 5.84359 6.27376 6.43600 6.54167 6.62344 7.20143 7.24888 7.93790 8.43399 9.22280 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.003360 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.273929 B = 8331.413836 C = 9241.152207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.189 3.811 3 N -0.696 5.696 4 C 0.572 3.428 5 O -0.558 6.558 6 C -0.202 4.202 7 C 0.225 3.775 8 N -0.490 5.490 9 C 0.288 3.712 10 N -0.464 5.464 11 H 0.469 0.531 12 N 0.014 4.986 13 N -0.212 5.212 14 C -0.088 4.088 15 C 0.080 3.920 16 C -0.140 4.140 17 C 0.191 3.809 18 N -0.608 5.608 19 C -0.254 4.254 20 H 0.069 0.931 21 C -0.051 4.051 22 N -0.934 5.934 23 Si 0.958 3.042 24 H -0.264 1.264 25 H -0.295 1.295 26 H -0.297 1.297 27 C 0.138 3.862 28 C -0.125 4.125 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.408 0.592 33 H 0.208 0.792 34 H 0.167 0.833 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.037 0.963 38 H -0.003 1.003 39 H 0.245 0.755 40 H 0.058 0.942 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.759 13.472 -8.357 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.103 3.897 3 N -0.347 5.347 4 C 0.358 3.642 5 O -0.438 6.438 6 C -0.211 4.211 7 C 0.052 3.948 8 N -0.204 5.204 9 C 0.042 3.958 10 N -0.192 5.192 11 H 0.321 0.679 12 N 0.030 4.970 13 N -0.093 5.093 14 C -0.214 4.214 15 C 0.049 3.951 16 C -0.180 4.180 17 C 0.065 3.935 18 N -0.331 5.331 19 C -0.385 4.385 20 H 0.087 0.913 21 C -0.247 4.247 22 N -0.580 5.580 23 Si 0.787 3.213 24 H -0.188 1.188 25 H -0.222 1.222 26 H -0.224 1.224 27 C 0.013 3.987 28 C -0.164 4.164 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.246 0.754 33 H 0.224 0.776 34 H 0.184 0.816 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.861 14.680 -7.240 19.109 hybrid contribution 1.265 -1.288 0.161 1.813 sum -8.595 13.391 -7.079 17.416 Atomic orbital electron populations 1.22130 0.93268 1.02736 1.02876 1.20229 0.94021 0.79790 0.95625 1.45889 1.52548 1.11570 1.24740 1.17796 0.79843 0.84440 0.82104 1.90730 1.39472 1.77113 1.36462 1.20747 1.05801 0.95567 0.98993 1.23525 0.86412 0.89577 0.95321 1.66810 1.25387 1.03135 1.25108 1.19752 0.94916 0.88036 0.93056 1.47497 1.43237 1.07638 1.20837 0.67894 1.81663 1.05808 1.16953 0.92533 1.74881 1.14237 0.97271 1.22875 1.20512 1.07685 0.96539 0.96621 1.21143 0.90533 0.87257 0.96124 1.22387 0.97616 0.99453 0.98534 1.20341 0.89639 0.94701 0.88825 1.44287 1.48119 1.39585 1.01153 1.19542 1.09141 1.03547 1.06241 0.91319 1.25718 0.98722 0.99924 1.00297 1.70192 1.38490 1.30683 1.18684 0.85339 0.77725 0.80760 0.77437 1.18815 1.22196 1.22396 1.21119 0.92737 0.96676 0.88206 1.22233 0.96703 1.01064 0.96369 0.90766 0.91387 0.92372 0.75359 0.77610 0.81594 0.92135 0.92680 0.94422 0.98448 0.94555 0.92301 0.95295 0.90874 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 8.40 71.98 0.60 -3.07 16 2 C 0.19 5.28 0.66 3.63 0.00 5.28 16 3 N -0.70 -17.28 4.06 -425.75 -1.73 -19.00 16 4 C 0.57 15.71 7.19 86.75 0.62 16.33 16 5 O -0.56 -18.86 12.61 -3.93 -0.05 -18.91 16 6 C -0.20 -4.68 5.88 -20.03 -0.12 -4.80 16 7 C 0.23 4.32 10.69 85.23 0.91 5.23 16 8 N -0.49 -10.26 10.37 -191.98 -1.99 -12.25 16 9 C 0.29 6.33 8.49 134.01 1.14 7.47 16 10 N -0.46 -8.19 7.53 -55.37 -0.42 -8.61 16 11 H 0.47 4.66 8.96 -213.26 -1.91 2.75 16 12 N 0.01 0.30 13.82 37.02 0.51 0.81 16 13 N -0.21 -5.40 12.40 -52.14 -0.65 -6.05 16 14 C -0.09 -2.16 7.27 39.63 0.29 -1.87 16 15 C 0.08 1.93 9.75 22.96 0.22 2.15 16 16 C -0.14 -5.28 4.67 30.66 0.14 -5.13 16 17 C 0.19 8.94 5.04 86.35 0.44 9.37 16 18 N -0.61 -28.04 2.99 -699.17 -2.09 -30.13 16 19 C -0.25 -13.32 9.58 84.03 0.81 -12.51 16 20 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 21 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 22 N -0.93 -54.89 11.20 21.65 0.24 -54.65 16 23 Si 0.96 44.42 29.59 68.60 2.03 46.45 16 24 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 C 0.14 4.66 6.24 86.36 0.54 5.20 16 28 C -0.12 -3.20 4.96 30.67 0.15 -3.05 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.64 6.15 -2.39 -0.01 1.63 16 32 H 0.41 7.93 5.30 -92.71 -0.49 7.44 16 33 H 0.21 2.60 6.39 -2.91 -0.02 2.58 16 34 H 0.17 3.89 7.71 -2.91 -0.02 3.87 16 35 H 0.06 2.42 6.21 -2.38 -0.01 2.41 16 36 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.04 2.10 6.06 -2.39 -0.01 2.09 16 38 H 0.00 -0.13 7.74 -2.39 -0.02 -0.15 16 39 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 40 H 0.06 1.97 7.93 -2.38 -0.02 1.95 16 41 H 0.03 0.90 6.94 -2.38 -0.02 0.88 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -70.82 345.94 0.72 -70.11 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -1.31 Total: 14.04 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 6.17 Total: 18.20 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -6.12 Total: -129.88 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -70.82 0.72 -70.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045461079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.596 kcal (2) G-P(sol) polarization free energy of solvation -70.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds