Wall clock time and date at job start Tue Mar 31 2020 04:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.45982 * 2 1 4 4 C 1.34777 * 120.00226 * 60.00316 * 3 2 1 5 5 O 1.21550 * 119.99748 * 359.97438 * 4 3 2 6 6 C 1.47869 * 120.00016 * 180.02562 * 4 3 2 7 7 C 1.39448 * 121.11791 * 359.71524 * 6 4 3 8 8 C 1.38613 * 119.37828 * 180.27590 * 7 6 4 9 9 N 1.31591 * 121.63830 * 359.97438 * 8 7 6 10 10 C 1.32206 * 121.86284 * 0.02562 * 9 8 7 11 11 N 1.37211 * 134.67424 * 180.02562 * 10 9 8 12 12 H 0.96999 * 125.87014 * 0.02562 * 11 10 9 13 13 N 1.28781 * 108.26372 * 179.97438 * 11 10 9 14 14 N 1.28697 * 111.75948 * 359.97438 * 13 11 10 15 15 C 1.34395 * 109.14895 * 0.02562 * 14 13 11 16 16 C 1.53039 * 109.45772 * 119.97677 * 2 1 3 17 17 C 1.53163 * 109.32659 * 181.38642 * 16 2 1 18 18 N 1.46931 * 108.76693 * 305.35441 * 17 16 2 19 19 C 1.36941 * 120.62770 * 233.63560 * 18 17 16 20 20 H 1.08000 * 119.99915 * 151.80414 * 19 18 17 21 21 C 1.38811 * 120.00004 * 331.79686 * 19 18 17 22 22 N 1.31622 * 119.99911 * 343.09759 * 21 19 18 23 23 Si 1.86799 * 119.99900 * 163.09297 * 21 19 18 24 24 H 1.48500 * 109.46968 * 60.00434 * 23 21 19 25 25 H 1.48502 * 109.46895 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47214 * 300.00121 * 23 21 19 27 27 C 1.46920 * 118.73809 * 53.60471 * 18 17 16 28 28 C 1.53036 * 109.45653 * 240.02764 * 2 1 3 29 29 H 1.09003 * 109.46755 * 60.00116 * 1 2 3 30 30 H 1.09003 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46823 * 299.99950 * 1 2 3 32 32 H 0.97006 * 119.99686 * 239.99733 * 3 2 1 33 33 H 1.08001 * 120.30889 * 0.25019 * 7 6 4 34 34 H 1.08005 * 119.18611 * 180.02562 * 8 7 6 35 35 H 1.09003 * 109.49744 * 301.31915 * 16 2 1 36 36 H 1.08995 * 109.50075 * 61.41849 * 16 2 1 37 37 H 1.08995 * 109.59187 * 185.56969 * 17 16 2 38 38 H 1.08999 * 109.70745 * 65.20220 * 17 16 2 39 39 H 0.96998 * 119.99981 * 179.97438 * 22 21 19 40 40 H 1.09005 * 109.58872 * 186.60486 * 27 18 17 41 41 H 1.08998 * 109.70567 * 66.25408 * 27 18 17 42 42 H 1.09004 * 109.50313 * 298.57608 * 28 2 1 43 43 H 1.09003 * 109.50116 * 58.64355 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6924 2.2111 1.0108 5 8 0.9934 1.8135 1.9223 6 6 2.1846 3.6055 1.0105 7 6 2.9919 4.0845 -0.0207 8 6 3.4377 5.3964 0.0182 9 7 3.1180 6.2051 1.0059 10 6 2.3565 5.8108 2.0121 11 7 1.8707 6.4101 3.1468 12 1 2.0307 7.3275 3.4180 13 7 1.1649 5.5455 3.7893 14 7 1.1325 4.4108 3.1829 15 6 1.8582 4.4928 2.0548 16 6 2.0399 -0.7210 1.2500 17 6 3.5711 -0.6890 1.2645 18 7 4.0676 -1.2494 0.0003 19 6 4.9753 -2.2748 0.0004 20 1 5.0025 -2.9719 -0.8240 21 6 5.8603 -2.4181 1.0601 22 7 6.0655 -1.4144 1.8866 23 14 6.7601 -4.0354 1.3133 24 1 7.5837 -4.3366 0.1149 25 1 7.6395 -3.9312 2.5054 26 1 5.7721 -5.1242 1.5214 27 6 3.5714 -0.6891 -1.2640 28 6 2.0398 -0.7209 -1.2500 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5758 1.6986 -0.7275 33 1 3.2674 3.4393 -0.8418 34 1 4.0625 5.7644 -0.7823 35 1 1.6574 -0.2209 2.1398 36 1 1.6976 -1.7557 1.2382 37 1 3.9412 -1.2850 2.0987 38 1 3.9163 0.3396 1.3687 39 1 6.6837 -1.5147 2.6273 40 1 3.9416 -1.2851 -2.0982 41 1 3.9145 0.3401 -1.3697 42 1 1.6976 -1.7557 -1.2383 43 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045499000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:20 Heat of formation + Delta-G solvation = 125.143672 kcal Electronic energy + Delta-G solvation = -28980.154946 eV Core-core repulsion = 25063.762219 eV Total energy + Delta-G solvation = -3916.392727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.56161 -40.33762 -39.05946 -37.33612 -34.48878 -34.31060 -32.76358 -31.56177 -30.98844 -30.51189 -29.90119 -27.43643 -25.76857 -24.12239 -24.06295 -23.40196 -22.30122 -21.57775 -20.69121 -19.10151 -18.88600 -18.40603 -17.56119 -16.83625 -16.76916 -15.66821 -15.24677 -14.93928 -14.73370 -14.65181 -13.99632 -13.81065 -13.47826 -13.44708 -13.31082 -13.13916 -12.96865 -12.48597 -12.38103 -11.92834 -11.82062 -11.64432 -11.60061 -11.41313 -11.12181 -10.94083 -10.71450 -10.44059 -10.26861 -10.15834 -9.96118 -9.70954 -9.58001 -9.49190 -9.25556 -9.14540 -8.63820 -8.45122 -6.66699 -5.78187 -3.21739 -0.11419 0.66253 1.94178 2.04796 2.84485 3.13675 3.38326 3.45089 3.45793 3.57455 3.62832 4.04372 4.24469 4.36891 4.49733 4.56372 4.94238 5.14953 5.27145 5.32097 5.35823 5.41396 5.51122 5.54421 5.59380 5.93621 5.94948 5.99929 6.11262 6.17538 6.34872 6.37976 6.43209 6.53179 6.64092 6.71576 6.80226 6.90156 7.05160 7.24675 7.41727 7.70615 7.76465 7.80961 8.00075 8.42806 8.45457 9.21483 9.84970 10.41234 11.29621 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.003623 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.909890 B = 7726.457611 C = 8276.549889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.185 3.815 3 N -0.700 5.700 4 C 0.552 3.448 5 O -0.498 6.498 6 C 0.000 4.000 7 C -0.142 4.142 8 C 0.164 3.836 9 N -0.463 5.463 10 C 0.213 3.787 11 N -0.408 5.408 12 H 0.456 0.544 13 N -0.002 5.002 14 N -0.205 5.205 15 C 0.003 3.997 16 C -0.153 4.153 17 C 0.178 3.822 18 N -0.590 5.590 19 C -0.256 4.256 20 H 0.064 0.936 21 C 0.005 3.995 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.146 3.854 28 C -0.138 4.138 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.396 0.604 33 H 0.159 0.841 34 H 0.183 0.817 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.016 0.984 39 H 0.254 0.746 40 H 0.056 0.944 41 H 0.012 0.988 42 H 0.076 0.924 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.904 15.081 -6.241 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.101 3.899 3 N -0.353 5.353 4 C 0.336 3.664 5 O -0.372 6.372 6 C -0.016 4.016 7 C -0.166 4.166 8 C -0.009 4.009 9 N -0.177 5.177 10 C -0.030 4.030 11 N -0.138 5.138 12 H 0.304 0.696 13 N 0.015 4.985 14 N -0.081 5.081 15 C -0.126 4.126 16 C -0.193 4.193 17 C 0.052 3.948 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.019 3.981 28 C -0.177 4.177 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.232 0.768 33 H 0.176 0.824 34 H 0.199 0.801 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.034 0.966 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.030 0.970 42 H 0.095 0.905 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.919 15.287 -4.094 18.166 hybrid contribution 1.397 -0.561 -0.866 1.737 sum -7.522 14.725 -4.959 17.263 Atomic orbital electron populations 1.22238 0.95188 1.02083 1.02447 1.20328 0.92717 0.79421 0.97463 1.45994 1.52726 1.12288 1.24247 1.17753 0.81491 0.83988 0.83125 1.90802 1.36158 1.75696 1.34552 1.19858 0.95798 0.94187 0.91796 1.22440 0.97315 0.97747 0.99090 1.22832 0.94991 0.89053 0.93980 1.66316 1.12492 1.38424 1.00509 1.19869 1.00192 0.90883 0.92075 1.44673 1.38325 1.15183 1.15646 0.69595 1.78257 1.08249 0.94337 1.17697 1.75585 1.16658 1.11428 1.04410 1.20126 1.01740 0.93879 0.96858 1.22595 1.00805 0.99250 0.96601 1.20678 0.87222 0.96917 0.89979 1.44049 1.48332 1.39549 0.99353 1.19119 1.09777 1.02946 1.06756 0.91793 1.25034 0.97178 0.97306 0.99864 1.70024 1.37330 1.29039 1.18047 0.86397 0.79303 0.83904 0.77308 1.20919 1.21678 1.21009 1.20856 0.90410 0.96127 0.90704 1.22351 0.99706 1.00654 0.95008 0.93409 0.92044 0.90673 0.76822 0.82391 0.80062 0.90900 0.91989 0.89802 0.96632 0.93597 0.92563 0.97005 0.90509 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 8.40 37.16 0.31 -2.07 16 2 C 0.19 3.01 0.66 -131.78 -0.09 2.92 16 3 N -0.70 -10.37 4.06 -48.49 -0.20 -10.57 16 4 C 0.55 9.10 7.21 -12.32 -0.09 9.01 16 5 O -0.50 -9.86 12.49 5.32 0.07 -9.80 16 6 C 0.00 0.00 5.92 -104.51 -0.62 -0.62 16 7 C -0.14 -1.40 9.61 -38.99 -0.37 -1.78 16 8 C 0.16 1.41 11.14 -17.52 -0.20 1.21 16 9 N -0.46 -5.08 10.35 -12.38 -0.13 -5.21 16 10 C 0.21 2.69 8.56 -156.21 -1.34 1.35 16 11 N -0.41 -4.34 7.06 31.11 0.22 -4.12 16 12 H 0.46 2.79 8.96 -190.25 -1.71 1.08 16 13 N 0.00 -0.03 13.29 60.35 0.80 0.77 16 14 N -0.20 -3.46 11.92 32.24 0.38 -3.07 16 15 C 0.00 0.05 6.97 -84.72 -0.59 -0.54 16 16 C -0.15 -3.06 4.66 -26.63 -0.12 -3.19 16 17 C 0.18 4.24 5.04 -3.72 -0.02 4.22 16 18 N -0.59 -14.06 2.99 -172.34 -0.52 -14.58 16 19 C -0.26 -6.84 9.58 -15.06 -0.14 -6.99 16 20 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 21 C 0.01 0.14 4.92 -17.43 -0.09 0.06 16 22 N -0.90 -26.06 11.20 55.49 0.62 -25.44 16 23 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.15 2.72 6.24 -3.71 -0.02 2.70 16 28 C -0.14 -2.11 4.96 -26.61 -0.13 -2.24 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.25 6.16 -51.93 -0.32 0.93 16 32 H 0.40 4.86 5.41 -40.82 -0.22 4.64 16 33 H 0.16 1.10 6.53 -52.49 -0.34 0.76 16 34 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.07 1.55 6.20 -51.93 -0.32 1.23 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 2.32 6.06 -51.93 -0.31 2.00 16 38 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.06 1.04 7.93 -51.93 -0.41 0.62 16 41 H 0.01 0.21 6.94 -51.93 -0.36 -0.15 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 345.06 15.07 5.20 5.20 Total: -1.00 -34.78 345.06 -8.57 -43.35 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.49 Total: 2.89 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -3.51 Total: 4.05 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: 1.19 Total: -62.21 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.78 -8.57 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045499000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.496 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds