Wall clock time and date at job start Tue Mar 31 2020 04:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46050 * 2 1 4 4 C 1.34776 * 119.99777 * 60.00094 * 3 2 1 5 5 O 1.21566 * 120.00266 * 359.72192 * 4 3 2 6 6 C 1.47702 * 119.99604 * 179.97438 * 4 3 2 7 7 C 1.41592 * 120.03166 * 359.45144 * 6 4 3 8 8 C 1.35781 * 119.54790 * 179.71558 * 7 6 4 9 9 C 1.40854 * 119.38761 * 0.57461 * 8 7 6 10 10 N 1.32490 * 133.41969 * 179.69111 * 9 8 7 11 11 N 1.28532 * 110.24554 * 179.97438 * 10 9 8 12 12 N 1.28984 * 110.84292 * 0.02562 * 11 10 9 13 13 N 1.36926 * 119.93423 * 359.69619 * 9 8 7 14 14 C 1.35498 * 120.84498 * 359.97438 * 13 9 8 15 15 C 1.53037 * 109.45773 * 119.97661 * 2 1 3 16 16 C 1.53169 * 109.32737 * 181.38745 * 15 2 1 17 17 N 1.46933 * 108.76325 * 305.35287 * 16 15 2 18 18 C 1.36937 * 120.62482 * 233.63259 * 17 16 15 19 19 H 1.08003 * 119.99646 * 151.81030 * 18 17 16 20 20 C 1.38805 * 120.00367 * 331.80075 * 18 17 16 21 21 N 1.31621 * 120.00213 * 343.09933 * 20 18 17 22 22 Si 1.86801 * 120.00193 * 163.09142 * 20 18 17 23 23 H 1.48502 * 109.46763 * 60.00304 * 22 20 18 24 24 H 1.48495 * 109.47215 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47292 * 300.00651 * 22 20 18 26 26 C 1.46919 * 118.73921 * 53.60862 * 17 16 15 27 27 C 1.53039 * 109.45713 * 240.02854 * 2 1 3 28 28 H 1.08997 * 109.47172 * 59.99761 * 1 2 3 29 29 H 1.08996 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47105 * 300.00026 * 1 2 3 31 31 H 0.97002 * 119.99983 * 239.99863 * 3 2 1 32 32 H 1.08008 * 120.22842 * 359.97438 * 7 6 4 33 33 H 1.07999 * 120.30871 * 180.26928 * 8 7 6 34 34 H 1.07997 * 119.82885 * 180.02562 * 14 13 9 35 35 H 1.09004 * 109.49668 * 301.31780 * 15 2 1 36 36 H 1.08995 * 109.50372 * 61.41991 * 15 2 1 37 37 H 1.08998 * 109.59128 * 185.57066 * 16 15 2 38 38 H 1.08998 * 109.70942 * 65.20191 * 16 15 2 39 39 H 0.96993 * 120.00389 * 180.02562 * 21 20 18 40 40 H 1.09006 * 109.58624 * 186.60780 * 26 17 16 41 41 H 1.08998 * 109.70696 * 66.25161 * 26 17 16 42 42 H 1.09002 * 109.49548 * 298.57945 * 27 2 1 43 43 H 1.08996 * 109.50090 * 58.64235 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6923 2.2110 1.0108 5 8 0.9894 1.8148 1.9200 6 6 2.1849 3.6035 1.0111 7 6 3.0089 4.0639 -0.0443 8 6 3.4514 5.3476 -0.0372 9 6 3.0925 6.1965 1.0279 10 7 3.3627 7.4614 1.3150 11 7 2.7972 7.7974 2.4193 12 7 2.1380 6.8069 2.9173 13 7 2.2991 5.7255 2.0396 14 6 1.8501 4.4471 2.0325 15 6 2.0398 -0.7210 1.2499 16 6 3.5711 -0.6890 1.2645 17 7 4.0676 -1.2494 0.0003 18 6 4.9752 -2.2748 0.0005 19 1 5.0025 -2.9719 -0.8240 20 6 5.8603 -2.4181 1.0601 21 7 6.0655 -1.4145 1.8866 22 14 6.7600 -4.0354 1.3134 23 1 7.5836 -4.3366 0.1149 24 1 7.6394 -3.9312 2.5054 25 1 5.7720 -5.1243 1.5214 26 6 3.5714 -0.6891 -1.2640 27 6 2.0398 -0.7209 -1.2500 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.5757 1.6986 -0.7275 32 1 3.2801 3.3998 -0.8518 33 1 4.0769 5.7129 -0.8383 34 1 1.2248 4.0929 2.8386 35 1 1.6574 -0.2209 2.1398 36 1 1.6976 -1.7557 1.2382 37 1 3.9412 -1.2850 2.0987 38 1 3.9163 0.3396 1.3688 39 1 6.6842 -1.5145 2.6268 40 1 3.9416 -1.2852 -2.0981 41 1 3.9145 0.3401 -1.3697 42 1 1.6975 -1.7557 -1.2382 43 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045501013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:11 Heat of formation + Delta-G solvation = 142.757613 kcal Electronic energy + Delta-G solvation = -28675.490968 eV Core-core repulsion = 24759.862038 eV Total energy + Delta-G solvation = -3915.628929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.69687 -40.68954 -38.89272 -37.38656 -34.76071 -34.39520 -32.90382 -31.81501 -30.98231 -30.64813 -30.03812 -27.56334 -25.86478 -24.71917 -24.18447 -23.14991 -22.45869 -21.92662 -20.86482 -19.34740 -18.77107 -17.83578 -17.72152 -17.17482 -16.79037 -15.59565 -15.32923 -15.16916 -14.89483 -14.63220 -14.04150 -13.93531 -13.84487 -13.54430 -13.40426 -13.38305 -13.10711 -12.82212 -12.50691 -12.16672 -12.04745 -11.96130 -11.75573 -11.53067 -11.36289 -11.29309 -11.03937 -10.78788 -10.54584 -10.44930 -10.38430 -10.15873 -9.98738 -9.72893 -9.40373 -9.02684 -8.84798 -8.53971 -6.76620 -5.87079 -3.30714 -0.18185 0.11033 1.29647 1.68330 2.39886 2.99534 3.19070 3.30992 3.32776 3.39815 3.40189 3.77491 4.04729 4.23123 4.42380 4.47397 4.59292 4.95608 5.09386 5.21374 5.21933 5.25013 5.29727 5.37492 5.37660 5.46633 5.58848 5.80413 5.83871 5.91867 5.98186 6.04361 6.18722 6.28134 6.36621 6.53611 6.57333 6.62336 6.76109 6.86327 7.28633 7.50473 7.59982 7.71807 8.04330 8.12110 8.36438 9.12611 9.75693 10.31249 11.20917 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014909 B = 0.003372 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.576380 B = 8301.520836 C = 9204.599062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.184 3.816 3 N -0.696 5.696 4 C 0.573 3.427 5 O -0.525 6.525 6 C -0.143 4.143 7 C -0.029 4.029 8 C -0.094 4.094 9 C 0.251 3.749 10 N -0.325 5.325 11 N -0.006 5.006 12 N -0.105 5.105 13 N -0.304 5.304 14 C 0.175 3.825 15 C -0.153 4.153 16 C 0.176 3.824 17 N -0.590 5.590 18 C -0.258 4.258 19 H 0.065 0.935 20 C 0.006 3.994 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.145 3.855 27 C -0.138 4.138 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.398 0.602 32 H 0.162 0.838 33 H 0.174 0.826 34 H 0.197 0.803 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.016 0.984 39 H 0.255 0.745 40 H 0.057 0.943 41 H 0.012 0.988 42 H 0.078 0.922 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.642 9.023 -6.777 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.100 3.900 3 N -0.346 5.346 4 C 0.357 3.643 5 O -0.403 6.403 6 C -0.152 4.152 7 C -0.056 4.056 8 C -0.117 4.117 9 C -0.003 4.003 10 N -0.184 5.184 11 N 0.001 4.999 12 N -0.089 5.089 13 N -0.083 5.083 14 C 0.045 3.955 15 C -0.192 4.192 16 C 0.051 3.949 17 N -0.313 5.313 18 C -0.387 4.387 19 H 0.083 0.917 20 C -0.193 4.193 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.018 3.982 27 C -0.178 4.178 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.234 0.766 32 H 0.180 0.820 33 H 0.191 0.809 34 H 0.214 0.786 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.030 0.970 42 H 0.096 0.904 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.072 10.132 -5.071 15.160 hybrid contribution 0.834 -1.503 -0.487 1.787 sum -9.238 8.629 -5.558 13.809 Atomic orbital electron populations 1.22242 0.95010 1.02281 1.02444 1.20387 0.92808 0.79137 0.97692 1.45975 1.52265 1.12378 1.24020 1.17360 0.80712 0.83375 0.82876 1.90770 1.37788 1.76191 1.35540 1.19888 1.02909 0.96246 0.96170 1.21514 0.91936 0.95078 0.97045 1.20319 1.02818 0.91662 0.96920 1.23117 0.92779 0.92464 0.91928 1.75178 1.24449 1.08440 1.10382 1.77874 1.01614 1.18615 1.01813 1.82875 1.24645 0.88642 1.12696 1.48800 1.31701 1.10982 1.16768 1.21736 0.95400 0.78756 0.99592 1.22606 1.00894 0.99378 0.96357 1.20696 0.87136 0.96954 0.90137 1.44048 1.48358 1.39570 0.99304 1.19114 1.09857 1.02956 1.06792 0.91749 1.25034 0.97126 0.97351 0.99811 1.70007 1.37302 1.29058 1.18094 0.86389 0.79310 0.83781 0.77380 1.20872 1.21636 1.20987 1.20863 0.90352 0.96143 0.90797 1.22365 0.99762 1.00761 0.94923 0.93294 0.91908 0.90701 0.76577 0.82017 0.80877 0.78636 0.90965 0.91842 0.89700 0.96628 0.93538 0.92460 0.97042 0.90371 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 8.40 37.16 0.31 -1.71 16 2 C 0.18 2.59 0.66 -131.78 -0.09 2.50 16 3 N -0.70 -8.46 4.06 -48.55 -0.20 -8.65 16 4 C 0.57 7.23 7.18 -12.39 -0.09 7.14 16 5 O -0.53 -8.04 12.50 5.31 0.07 -7.98 16 6 C -0.14 -1.46 5.84 -105.33 -0.62 -2.07 16 7 C -0.03 -0.23 9.53 -39.18 -0.37 -0.60 16 8 C -0.09 -0.76 10.09 -39.47 -0.40 -1.16 16 9 C 0.25 2.97 8.02 -156.28 -1.25 1.71 16 10 N -0.33 -4.54 12.26 31.10 0.38 -4.15 16 11 N -0.01 -0.09 13.35 60.35 0.81 0.72 16 12 N -0.11 -1.50 13.99 60.35 0.84 -0.65 16 13 N -0.30 -3.75 3.92 -12.06 -0.05 -3.80 16 14 C 0.18 1.88 10.77 -16.51 -0.18 1.70 16 15 C -0.15 -2.72 4.66 -26.62 -0.12 -2.85 16 16 C 0.18 3.88 5.04 -3.72 -0.02 3.86 16 17 N -0.59 -13.24 2.99 -172.33 -0.52 -13.75 16 18 C -0.26 -6.59 9.58 -15.06 -0.14 -6.74 16 19 H 0.06 1.62 7.89 -52.48 -0.41 1.20 16 20 C 0.01 0.15 4.92 -17.43 -0.09 0.07 16 21 N -0.90 -25.04 11.20 55.49 0.62 -24.42 16 22 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.15 2.51 6.24 -3.71 -0.02 2.48 16 27 C -0.14 -1.90 4.96 -26.61 -0.13 -2.04 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.04 6.15 -51.93 -0.32 0.72 16 31 H 0.40 3.95 5.31 -40.82 -0.22 3.73 16 32 H 0.16 0.82 6.44 -52.48 -0.34 0.48 16 33 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.20 1.90 7.57 -52.49 -0.40 1.50 16 35 H 0.07 1.33 6.21 -51.93 -0.32 1.01 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.08 2.20 6.06 -51.93 -0.31 1.88 16 38 H 0.02 0.36 7.74 -51.93 -0.40 -0.04 16 39 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 41 H 0.01 0.19 6.94 -51.93 -0.36 -0.17 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -31.63 346.39 -6.23 -37.86 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.17 Total: 1.45 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -3.21 Total: 2.31 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 1.89 Total: -54.71 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.07 Total: -7.98 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.63 -6.23 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045501013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.622 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds