Wall clock time and date at job start Tue Mar 31 2020 04:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46050 * 2 1 4 4 C 1.34776 * 119.99777 * 60.00094 * 3 2 1 5 5 O 1.21566 * 120.00266 * 359.72192 * 4 3 2 6 6 C 1.47702 * 119.99604 * 179.97438 * 4 3 2 7 7 C 1.41592 * 120.03166 * 359.45144 * 6 4 3 8 8 C 1.35781 * 119.54790 * 179.71558 * 7 6 4 9 9 C 1.40854 * 119.38761 * 0.57461 * 8 7 6 10 10 N 1.32490 * 133.41969 * 179.69111 * 9 8 7 11 11 N 1.28532 * 110.24554 * 179.97438 * 10 9 8 12 12 N 1.28984 * 110.84292 * 0.02562 * 11 10 9 13 13 N 1.36926 * 119.93423 * 359.69619 * 9 8 7 14 14 C 1.35498 * 120.84498 * 359.97438 * 13 9 8 15 15 C 1.53037 * 109.45773 * 119.97661 * 2 1 3 16 16 C 1.53169 * 109.32737 * 181.38745 * 15 2 1 17 17 N 1.46933 * 108.76325 * 305.35287 * 16 15 2 18 18 C 1.36937 * 120.62482 * 233.63259 * 17 16 15 19 19 H 1.08003 * 119.99646 * 151.81030 * 18 17 16 20 20 C 1.38805 * 120.00367 * 331.80075 * 18 17 16 21 21 N 1.31621 * 120.00213 * 343.09933 * 20 18 17 22 22 Si 1.86801 * 120.00193 * 163.09142 * 20 18 17 23 23 H 1.48502 * 109.46763 * 60.00304 * 22 20 18 24 24 H 1.48495 * 109.47215 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47292 * 300.00651 * 22 20 18 26 26 C 1.46919 * 118.73921 * 53.60862 * 17 16 15 27 27 C 1.53039 * 109.45713 * 240.02854 * 2 1 3 28 28 H 1.08997 * 109.47172 * 59.99761 * 1 2 3 29 29 H 1.08996 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47105 * 300.00026 * 1 2 3 31 31 H 0.97002 * 119.99983 * 239.99863 * 3 2 1 32 32 H 1.08008 * 120.22842 * 359.97438 * 7 6 4 33 33 H 1.07999 * 120.30871 * 180.26928 * 8 7 6 34 34 H 1.07997 * 119.82885 * 180.02562 * 14 13 9 35 35 H 1.09004 * 109.49668 * 301.31780 * 15 2 1 36 36 H 1.08995 * 109.50372 * 61.41991 * 15 2 1 37 37 H 1.08998 * 109.59128 * 185.57066 * 16 15 2 38 38 H 1.08998 * 109.70942 * 65.20191 * 16 15 2 39 39 H 0.96993 * 120.00389 * 180.02562 * 21 20 18 40 40 H 1.09006 * 109.58624 * 186.60780 * 26 17 16 41 41 H 1.08998 * 109.70696 * 66.25161 * 26 17 16 42 42 H 1.09002 * 109.49548 * 298.57945 * 27 2 1 43 43 H 1.08996 * 109.50090 * 58.64235 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6923 2.2110 1.0108 5 8 0.9894 1.8148 1.9200 6 6 2.1849 3.6035 1.0111 7 6 3.0089 4.0639 -0.0443 8 6 3.4514 5.3476 -0.0372 9 6 3.0925 6.1965 1.0279 10 7 3.3627 7.4614 1.3150 11 7 2.7972 7.7974 2.4193 12 7 2.1380 6.8069 2.9173 13 7 2.2991 5.7255 2.0396 14 6 1.8501 4.4471 2.0325 15 6 2.0398 -0.7210 1.2499 16 6 3.5711 -0.6890 1.2645 17 7 4.0676 -1.2494 0.0003 18 6 4.9752 -2.2748 0.0005 19 1 5.0025 -2.9719 -0.8240 20 6 5.8603 -2.4181 1.0601 21 7 6.0655 -1.4145 1.8866 22 14 6.7600 -4.0354 1.3134 23 1 7.5836 -4.3366 0.1149 24 1 7.6394 -3.9312 2.5054 25 1 5.7720 -5.1243 1.5214 26 6 3.5714 -0.6891 -1.2640 27 6 2.0398 -0.7209 -1.2500 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.5757 1.6986 -0.7275 32 1 3.2801 3.3998 -0.8518 33 1 4.0769 5.7129 -0.8383 34 1 1.2248 4.0929 2.8386 35 1 1.6574 -0.2209 2.1398 36 1 1.6976 -1.7557 1.2382 37 1 3.9412 -1.2850 2.0987 38 1 3.9163 0.3396 1.3688 39 1 6.6842 -1.5145 2.6268 40 1 3.9416 -1.2852 -2.0981 41 1 3.9145 0.3401 -1.3697 42 1 1.6975 -1.7557 -1.2382 43 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045501013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:11 Heat of formation + Delta-G solvation = 122.062816 kcal Electronic energy + Delta-G solvation = -28676.388361 eV Core-core repulsion = 24759.862038 eV Total energy + Delta-G solvation = -3916.526323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.63478 -41.75409 -39.91234 -38.60831 -36.16575 -35.38744 -33.99982 -33.27243 -32.11800 -31.64635 -31.53501 -29.02603 -26.81948 -25.86114 -25.53309 -24.10922 -23.87738 -23.06522 -22.20561 -20.47984 -19.87730 -18.98591 -18.63340 -18.29366 -18.13013 -16.80606 -16.59871 -16.22710 -16.09927 -15.83596 -15.50374 -15.17119 -14.89601 -14.82941 -14.68684 -14.55490 -14.17890 -13.95150 -13.81180 -13.24679 -13.17311 -12.98410 -12.87959 -12.82367 -12.77197 -12.52749 -12.49068 -12.35427 -12.24514 -11.92449 -11.70683 -11.44021 -11.34364 -11.26446 -10.67687 -10.48397 -10.05063 -9.81685 -8.60376 -7.83843 -5.27567 -1.06827 -0.66332 0.40188 0.69946 1.47511 1.50697 1.51452 1.55776 2.02432 2.28152 2.47010 2.53669 2.92299 3.27171 3.32115 3.41991 3.65334 3.74376 3.79098 3.97210 4.01304 4.12121 4.18540 4.41387 4.55935 4.58688 4.64773 4.74582 4.78015 4.84161 4.95393 4.96797 5.00831 5.06921 5.12777 5.22484 5.26421 5.42782 5.44573 5.57239 5.63720 5.69695 5.82678 6.42927 6.53951 7.05474 7.14955 7.19967 7.93778 8.42514 9.21068 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014909 B = 0.003372 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.576380 B = 8301.520836 C = 9204.599062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.190 3.810 3 N -0.689 5.689 4 C 0.572 3.428 5 O -0.555 6.555 6 C -0.135 4.135 7 C -0.016 4.016 8 C -0.080 4.080 9 C 0.240 3.760 10 N -0.344 5.344 11 N -0.024 5.024 12 N -0.130 5.130 13 N -0.306 5.306 14 C 0.164 3.836 15 C -0.142 4.142 16 C 0.190 3.810 17 N -0.608 5.608 18 C -0.257 4.257 19 H 0.068 0.932 20 C -0.048 4.048 21 N -0.933 5.933 22 Si 0.956 3.044 23 H -0.273 1.273 24 H -0.301 1.301 25 H -0.282 1.282 26 C 0.138 3.862 27 C -0.125 4.125 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.412 0.588 32 H 0.199 0.801 33 H 0.211 0.789 34 H 0.198 0.802 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.000 1.000 39 H 0.246 0.754 40 H 0.058 0.942 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.297 8.734 -10.064 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.104 3.896 3 N -0.341 5.341 4 C 0.357 3.643 5 O -0.434 6.434 6 C -0.144 4.144 7 C -0.042 4.042 8 C -0.103 4.103 9 C -0.012 4.012 10 N -0.205 5.205 11 N -0.017 5.017 12 N -0.113 5.113 13 N -0.084 5.084 14 C 0.034 3.966 15 C -0.181 4.181 16 C 0.064 3.936 17 N -0.331 5.331 18 C -0.387 4.387 19 H 0.086 0.914 20 C -0.244 4.244 21 N -0.579 5.579 22 Si 0.785 3.215 23 H -0.199 1.199 24 H -0.227 1.227 25 H -0.208 1.208 26 C 0.013 3.987 27 C -0.164 4.164 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.251 0.749 32 H 0.216 0.784 33 H 0.228 0.772 34 H 0.215 0.785 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.742 9.849 -8.412 16.827 hybrid contribution 1.014 -1.494 0.469 1.866 sum -9.728 8.355 -7.943 15.084 Atomic orbital electron populations 1.22140 0.93217 1.02792 1.02966 1.20238 0.94026 0.79622 0.95684 1.45836 1.52321 1.11516 1.24381 1.17609 0.80158 0.84108 0.82386 1.90771 1.39104 1.76937 1.36626 1.19764 1.03060 0.94774 0.96780 1.21874 0.90261 0.95314 0.96750 1.20819 1.02191 0.90981 0.96290 1.23679 0.92645 0.92287 0.92607 1.75074 1.25156 1.09792 1.10447 1.77829 1.02235 1.19220 1.02459 1.82797 1.25563 0.89224 1.13719 1.48756 1.31911 1.11018 1.16738 1.21841 0.95992 0.78441 1.00303 1.22404 0.97712 0.99498 0.98524 1.20356 0.89546 0.94838 0.88862 1.44264 1.48103 1.39572 1.01185 1.19461 1.09263 1.03708 1.06290 0.91408 1.25674 0.98679 0.99772 1.00275 1.70154 1.38400 1.30668 1.18664 0.85506 0.78188 0.80790 0.76968 1.19908 1.22719 1.20845 1.21127 0.92615 0.96854 0.88132 1.22242 0.96808 1.01038 0.96348 0.90621 0.91474 0.92301 0.74911 0.78395 0.77213 0.78507 0.92050 0.92778 0.94506 0.98159 0.94542 0.92372 0.94904 0.91020 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.40 71.98 0.60 -2.71 16 2 C 0.19 4.76 0.66 3.63 0.00 4.76 16 3 N -0.69 -14.41 4.06 -425.78 -1.73 -16.13 16 4 C 0.57 13.28 7.18 86.74 0.62 13.90 16 5 O -0.55 -16.59 12.50 -3.92 -0.05 -16.64 16 6 C -0.13 -2.45 5.84 -20.32 -0.12 -2.56 16 7 C -0.02 -0.18 9.53 22.53 0.21 0.03 16 8 C -0.08 -1.01 10.09 22.34 0.23 -0.79 16 9 C 0.24 5.33 8.02 134.16 1.08 6.41 16 10 N -0.34 -9.46 12.26 -55.53 -0.68 -10.14 16 11 N -0.02 -0.74 13.35 37.02 0.49 -0.24 16 12 N -0.13 -3.77 13.99 37.02 0.52 -3.25 16 13 N -0.31 -7.44 3.92 -192.07 -0.75 -8.19 16 14 C 0.16 3.41 10.77 83.75 0.90 4.32 16 15 C -0.14 -4.98 4.66 30.66 0.14 -4.84 16 16 C 0.19 8.42 5.04 86.35 0.44 8.85 16 17 N -0.61 -26.64 2.99 -699.14 -2.09 -28.73 16 18 C -0.26 -13.01 9.58 84.03 0.81 -12.21 16 19 H 0.07 3.32 7.89 -2.91 -0.02 3.30 16 20 C -0.05 -2.59 4.92 84.86 0.42 -2.17 16 21 N -0.93 -53.21 11.20 21.65 0.24 -52.97 16 22 Si 0.96 43.36 29.59 68.60 2.03 45.39 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 C 0.14 4.29 6.24 86.36 0.54 4.83 16 27 C -0.13 -2.90 4.96 30.67 0.15 -2.75 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.51 6.15 -2.39 -0.01 1.49 16 31 H 0.41 6.13 5.31 -92.71 -0.49 5.64 16 32 H 0.20 0.83 6.44 -2.91 -0.02 0.81 16 33 H 0.21 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.20 3.91 7.57 -2.91 -0.02 3.89 16 35 H 0.06 2.29 6.21 -2.38 -0.01 2.28 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.04 1.98 6.06 -2.39 -0.01 1.96 16 38 H 0.00 0.02 7.74 -2.39 -0.02 0.00 16 39 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 40 H 0.06 1.81 7.93 -2.38 -0.02 1.79 16 41 H 0.03 0.91 6.94 -2.39 -0.02 0.89 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -72.55 346.39 4.58 -67.97 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.58 Total: 7.87 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 6.02 Total: 15.08 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -4.00 Total: -119.66 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.05 Total: -16.64 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -72.55 4.58 -67.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045501013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.028 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds