Wall clock time and date at job start Tue Mar 31 2020 04:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.45869 * 2 1 4 4 C 1.34776 * 119.99673 * 60.00124 * 3 2 1 5 5 O 1.21552 * 120.00248 * 359.72422 * 4 3 2 6 6 C 1.47828 * 119.99372 * 180.02562 * 4 3 2 7 7 C 1.41579 * 120.37679 * 359.72456 * 6 4 3 8 8 C 1.34819 * 120.11515 * 180.02562 * 7 6 4 9 9 N 1.36056 * 120.82440 * 0.02562 * 8 7 6 10 10 N 1.40253 * 133.72849 * 180.02562 * 9 8 7 11 11 N 1.28975 * 107.01964 * 179.97438 * 10 9 8 12 12 N 1.28543 * 110.84241 * 359.97438 * 11 10 9 13 13 C 1.32611 * 110.18845 * 0.02562 * 12 11 10 14 14 C 1.38458 * 120.36960 * 179.45125 * 6 4 3 15 15 C 1.53035 * 109.46239 * 119.97409 * 2 1 3 16 16 C 1.53169 * 109.33017 * 181.38993 * 15 2 1 17 17 N 1.46933 * 108.76325 * 305.35526 * 16 15 2 18 18 C 1.36937 * 120.62482 * 233.63259 * 17 16 15 19 19 H 1.08003 * 119.99646 * 151.81030 * 18 17 16 20 20 C 1.38805 * 120.00367 * 331.80075 * 18 17 16 21 21 N 1.31621 * 120.00213 * 343.09933 * 20 18 17 22 22 Si 1.86806 * 120.00007 * 163.09363 * 20 18 17 23 23 H 1.48492 * 109.46953 * 60.00305 * 22 20 18 24 24 H 1.48503 * 109.47224 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47011 * 300.00106 * 22 20 18 26 26 C 1.46919 * 118.73921 * 53.60862 * 17 16 15 27 27 C 1.53039 * 109.45817 * 240.03028 * 2 1 3 28 28 H 1.08997 * 109.47365 * 59.99768 * 1 2 3 29 29 H 1.09005 * 109.47238 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47209 * 299.99851 * 1 2 3 31 31 H 0.96995 * 119.99683 * 240.00107 * 3 2 1 32 32 H 1.07998 * 119.94203 * 359.97438 * 7 6 4 33 33 H 1.07994 * 119.58572 * 179.97438 * 8 7 6 34 34 H 1.08002 * 120.52063 * 359.97085 * 14 6 4 35 35 H 1.09004 * 109.49723 * 301.32233 * 15 2 1 36 36 H 1.08995 * 109.50038 * 61.42273 * 15 2 1 37 37 H 1.08998 * 109.59128 * 185.57304 * 16 15 2 38 38 H 1.08998 * 109.70942 * 65.20430 * 16 15 2 39 39 H 0.97003 * 120.00187 * 180.02562 * 21 20 18 40 40 H 1.09006 * 109.58624 * 186.60780 * 26 17 16 41 41 H 1.08998 * 109.70696 * 66.25161 * 26 17 16 42 42 H 1.08996 * 109.50189 * 298.57479 * 27 2 1 43 43 H 1.08998 * 109.50005 * 58.64466 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6922 2.2111 1.0109 5 8 0.9894 1.8149 1.9200 6 6 2.1843 3.6051 1.0105 7 6 3.0029 4.0751 -0.0447 8 6 3.4491 5.3473 -0.0394 9 7 3.1236 6.1961 0.9729 10 7 3.4266 7.5375 1.2486 11 7 2.8445 7.8352 2.3604 12 7 2.2003 6.8242 2.8243 13 6 2.3350 5.7841 2.0128 14 6 1.8450 4.4675 2.0393 15 6 2.0399 -0.7209 1.2499 16 6 3.5711 -0.6888 1.2645 17 7 4.0677 -1.2492 0.0002 18 6 4.9753 -2.2745 0.0004 19 1 5.0027 -2.9716 -0.8240 20 6 5.8604 -2.4178 1.0600 21 7 6.0656 -1.4142 1.8865 22 14 6.7603 -4.0351 1.3132 23 1 7.5838 -4.3362 0.1148 24 1 7.6398 -3.9309 2.5053 25 1 5.7722 -5.1240 1.5213 26 6 3.5714 -0.6889 -1.2640 27 6 2.0398 -0.7208 -1.2500 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.5756 1.6987 -0.7275 32 1 3.2711 3.4132 -0.8547 33 1 4.0734 5.6967 -0.8484 34 1 1.2177 4.1319 2.8519 35 1 1.6574 -0.2208 2.1398 36 1 1.6977 -1.7557 1.2382 37 1 3.9413 -1.2848 2.0987 38 1 3.9163 0.3398 1.3687 39 1 6.6844 -1.5142 2.6268 40 1 3.9416 -1.2850 -2.0982 41 1 3.9145 0.3403 -1.3697 42 1 1.6976 -1.7556 -1.2383 43 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045524667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:17 Heat of formation + Delta-G solvation = 143.675176 kcal Electronic energy + Delta-G solvation = -28645.014610 eV Core-core repulsion = 24729.425469 eV Total energy + Delta-G solvation = -3915.589141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.64244 -40.63630 -38.85730 -37.45147 -34.64182 -34.26129 -32.92192 -31.80473 -30.91568 -30.70005 -30.03430 -27.55936 -25.75286 -25.04285 -24.17272 -23.11385 -22.45133 -21.81319 -20.82643 -19.05249 -18.91598 -18.33524 -17.28092 -17.13418 -16.68135 -15.56805 -15.40928 -15.14411 -14.88497 -14.71221 -14.07803 -13.91931 -13.71547 -13.54525 -13.40420 -13.36175 -13.15127 -12.77071 -12.52370 -12.28553 -12.06680 -11.78770 -11.74009 -11.52849 -11.32946 -11.26888 -11.03827 -10.78682 -10.53854 -10.46073 -10.38289 -10.14818 -9.97950 -9.72367 -9.39248 -8.99482 -8.84097 -8.53902 -6.76625 -5.87034 -3.30737 -0.21841 0.08679 1.38412 1.80080 2.31548 2.82704 3.22133 3.32735 3.39842 3.40214 3.44493 3.76604 3.99488 4.25627 4.42364 4.51798 4.61574 4.94183 5.07292 5.13946 5.22121 5.26038 5.31900 5.37724 5.41618 5.46923 5.59936 5.80962 5.84337 5.95626 5.98490 6.04317 6.19407 6.28526 6.37632 6.53289 6.57681 6.63309 6.76208 6.87137 7.29155 7.51606 7.60507 7.71848 8.06597 8.13566 8.36474 9.12620 9.75705 10.31271 11.20905 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.003362 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.639326 B = 8327.357732 C = 9243.813435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.184 3.816 3 N -0.696 5.696 4 C 0.561 3.439 5 O -0.517 6.517 6 C -0.062 4.062 7 C -0.110 4.110 8 C 0.107 3.893 9 N -0.294 5.294 10 N -0.111 5.111 11 N -0.010 5.010 12 N -0.315 5.315 13 C 0.239 3.761 14 C -0.027 4.027 15 C -0.153 4.153 16 C 0.176 3.824 17 N -0.590 5.590 18 C -0.258 4.258 19 H 0.065 0.935 20 C 0.006 3.994 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.146 3.854 27 C -0.138 4.138 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.398 0.602 32 H 0.172 0.828 33 H 0.188 0.812 34 H 0.181 0.819 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.016 0.984 39 H 0.255 0.745 40 H 0.057 0.943 41 H 0.011 0.989 42 H 0.078 0.922 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.098 9.311 -7.517 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.099 3.901 3 N -0.347 5.347 4 C 0.346 3.654 5 O -0.394 6.394 6 C -0.073 4.073 7 C -0.134 4.134 8 C -0.020 4.020 9 N -0.075 5.075 10 N -0.095 5.095 11 N -0.003 5.003 12 N -0.176 5.176 13 C -0.015 4.015 14 C -0.051 4.051 15 C -0.192 4.192 16 C 0.051 3.949 17 N -0.313 5.313 18 C -0.387 4.387 19 H 0.082 0.918 20 C -0.193 4.193 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.019 3.981 27 C -0.178 4.178 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.234 0.766 32 H 0.189 0.811 33 H 0.205 0.795 34 H 0.199 0.801 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.029 0.971 42 H 0.096 0.904 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.218 10.570 -6.228 15.345 hybrid contribution 0.976 -1.458 -0.688 1.885 sum -8.242 9.112 -6.916 14.099 Atomic orbital electron populations 1.22241 0.94998 1.02286 1.02458 1.20389 0.92823 0.79199 0.97678 1.46020 1.52211 1.12437 1.24034 1.17639 0.81019 0.83833 0.82942 1.90770 1.37212 1.76069 1.35333 1.20520 0.96959 0.95513 0.94356 1.21258 0.97786 0.94307 1.00055 1.21565 1.00324 0.88704 0.91437 1.49018 1.30965 1.10709 1.16780 1.82800 1.24652 0.87825 1.14173 1.77876 1.01943 1.18878 1.01575 1.75248 1.22787 0.95333 1.24223 1.22766 0.94468 0.97272 0.86966 1.20787 0.98323 0.86223 0.99797 1.22605 1.00881 0.99385 0.96374 1.20697 0.87146 0.96954 0.90122 1.44049 1.48355 1.39574 0.99306 1.19112 1.09862 1.02970 1.06801 0.91762 1.25036 0.97129 0.97350 0.99802 1.70010 1.37290 1.29055 1.18084 0.86391 0.79310 0.83792 0.77371 1.20892 1.21626 1.20973 1.20861 0.90367 0.96104 0.90802 1.22365 0.99745 1.00768 0.94927 0.93304 0.91901 0.90676 0.76636 0.81064 0.79490 0.80149 0.90938 0.91834 0.89683 0.96628 0.93529 0.92483 0.97087 0.90377 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 8.40 37.16 0.31 -1.73 16 2 C 0.18 2.59 0.66 -131.78 -0.09 2.51 16 3 N -0.70 -8.51 4.06 -48.51 -0.20 -8.71 16 4 C 0.56 7.23 7.20 -12.34 -0.09 7.14 16 5 O -0.52 -8.14 12.58 5.32 0.07 -8.08 16 6 C -0.06 -0.64 5.90 -104.62 -0.62 -1.26 16 7 C -0.11 -0.82 9.48 -39.52 -0.37 -1.19 16 8 C 0.11 0.81 11.19 -16.89 -0.19 0.62 16 9 N -0.29 -3.37 3.94 -12.43 -0.05 -3.42 16 10 N -0.11 -1.50 13.98 60.35 0.84 -0.66 16 11 N -0.01 -0.15 13.35 60.35 0.81 0.66 16 12 N -0.32 -4.61 12.27 31.03 0.38 -4.23 16 13 C 0.24 3.00 8.02 -156.36 -1.25 1.75 16 14 C -0.03 -0.30 9.70 -38.65 -0.37 -0.68 16 15 C -0.15 -2.74 4.66 -26.63 -0.12 -2.87 16 16 C 0.18 3.89 5.04 -3.72 -0.02 3.87 16 17 N -0.59 -13.25 2.99 -172.33 -0.52 -13.76 16 18 C -0.26 -6.60 9.58 -15.06 -0.14 -6.75 16 19 H 0.06 1.61 7.89 -52.48 -0.41 1.20 16 20 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 21 N -0.90 -25.05 11.20 55.49 0.62 -24.43 16 22 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.15 2.51 6.24 -3.71 -0.02 2.49 16 27 C -0.14 -1.91 4.96 -26.61 -0.13 -2.04 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.06 6.15 -51.93 -0.32 0.74 16 31 H 0.40 3.92 5.34 -40.82 -0.22 3.70 16 32 H 0.17 0.78 6.46 -52.49 -0.34 0.44 16 33 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.18 1.90 7.67 -52.49 -0.40 1.49 16 35 H 0.07 1.35 6.21 -51.93 -0.32 1.03 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 2.21 6.06 -51.93 -0.31 1.89 16 38 H 0.02 0.36 7.74 -51.93 -0.40 -0.04 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.06 0.99 7.93 -51.93 -0.41 0.57 16 41 H 0.01 0.18 6.94 -51.93 -0.36 -0.18 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -32.09 346.71 -6.22 -38.31 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.18 Total: 1.29 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -3.20 Total: 1.95 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 1.89 Total: -54.55 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.07 Total: -8.08 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.09 -6.22 -38.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045524667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.989 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds