Wall clock time and date at job start Tue Mar 31 2020 04:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46003 * 2 1 4 4 C 1.34784 * 119.99819 * 60.02694 * 3 2 1 5 5 O 1.21522 * 120.00018 * 0.02562 * 4 3 2 6 6 C 1.48126 * 119.99754 * 179.97438 * 4 3 2 7 7 N 1.33471 * 125.32658 * 0.02562 * 6 4 3 8 8 C 1.32502 * 109.75295 * 179.97438 * 7 6 4 9 9 N 1.33981 * 132.34052 * 179.97438 * 8 7 6 10 10 C 1.31253 * 120.88562 * 180.02562 * 9 8 7 11 11 C 1.40177 * 120.35322 * 0.02562 * 10 9 8 12 12 C 1.35678 * 119.27083 * 359.97438 * 11 10 9 13 13 N 1.36170 * 119.03444 * 0.02562 * 12 11 10 14 14 N 1.31987 * 125.32237 * 179.97438 * 6 4 3 15 15 C 1.53041 * 109.45006 * 119.96659 * 2 1 3 16 16 C 1.53195 * 109.31319 * 181.37847 * 15 2 1 17 17 N 1.46928 * 108.77523 * 305.36522 * 16 15 2 18 18 C 1.36933 * 120.62846 * 233.62673 * 17 16 15 19 19 H 1.08009 * 120.00097 * 27.67250 * 18 17 16 20 20 C 1.38812 * 119.99972 * 207.66381 * 18 17 16 21 21 N 1.31615 * 119.99727 * 17.37040 * 20 18 17 22 22 Si 1.86802 * 120.00206 * 197.36370 * 20 18 17 23 23 H 1.48499 * 109.46895 * 90.00302 * 22 20 18 24 24 H 1.48494 * 109.47077 * 210.00487 * 22 20 18 25 25 H 1.48499 * 109.47031 * 330.00419 * 22 20 18 26 26 C 1.46921 * 118.73827 * 53.60841 * 17 16 15 27 27 C 1.53038 * 109.46087 * 240.02960 * 2 1 3 28 28 H 1.08993 * 109.47218 * 60.00301 * 1 2 3 29 29 H 1.09003 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47008 * 299.99735 * 1 2 3 31 31 H 0.97003 * 120.00233 * 240.02691 * 3 2 1 32 32 H 1.07994 * 119.83002 * 180.27504 * 10 9 8 33 33 H 1.07998 * 120.36404 * 180.02562 * 11 10 9 34 34 H 1.08006 * 120.48752 * 180.02562 * 12 11 10 35 35 H 1.08994 * 109.49862 * 301.33460 * 15 2 1 36 36 H 1.09006 * 109.49825 * 61.42854 * 15 2 1 37 37 H 1.08997 * 109.58426 * 185.57830 * 16 15 2 38 38 H 1.09001 * 109.58324 * 65.15444 * 16 15 2 39 39 H 0.97003 * 119.99871 * 179.97438 * 21 20 18 40 40 H 1.08995 * 109.58761 * 186.59904 * 26 17 16 41 41 H 1.09005 * 109.70478 * 66.24756 * 26 17 16 42 42 H 1.08998 * 109.49815 * 298.57863 * 27 2 1 43 43 H 1.09003 * 109.50152 * 58.64396 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6927 2.2109 1.0112 5 8 0.9949 1.8130 1.9231 6 6 2.1866 3.6074 1.0114 7 7 2.9568 4.1538 0.0682 8 6 3.2144 5.4165 0.3763 9 7 3.9283 6.3682 -0.2400 10 6 4.0371 7.5698 0.2769 11 6 3.4054 7.8792 1.4894 12 6 2.6799 6.9232 2.1223 13 7 2.5852 5.6859 1.5616 14 7 1.9333 4.5063 1.9441 15 6 2.0396 -0.7208 1.2502 16 6 3.5711 -0.6889 1.2645 17 7 4.0677 -1.2493 0.0003 18 6 4.9754 -2.2746 0.0004 19 1 5.0079 -2.9669 0.8288 20 6 5.8536 -2.4242 -1.0641 21 7 6.0602 -1.4225 -1.8925 22 14 6.7423 -4.0471 -1.3208 23 1 5.9246 -4.9263 -2.1946 24 1 8.0571 -3.7951 -1.9634 25 1 6.9515 -4.7098 -0.0085 26 6 3.5714 -0.6890 -1.2640 27 6 2.0399 -0.7208 -1.2500 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.5753 1.6988 -0.7277 32 1 4.6132 8.3253 -0.2366 33 1 3.4945 8.8679 1.9146 34 1 2.1846 7.1404 3.0572 35 1 1.6569 -0.2208 2.1398 36 1 1.6974 -1.7557 1.2384 37 1 3.9412 -1.2849 2.0987 38 1 3.9142 0.3406 1.3676 39 1 6.6742 -1.5269 -2.6362 40 1 3.9417 -1.2849 -2.0981 41 1 3.9145 0.3402 -1.3696 42 1 1.6976 -1.7556 -1.2383 43 1 1.6570 -0.2211 -2.1399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045591367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:23 Heat of formation + Delta-G solvation = 138.412711 kcal Electronic energy + Delta-G solvation = -28533.491881 eV Core-core repulsion = 24617.674542 eV Total energy + Delta-G solvation = -3915.817338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.18136 -40.22624 -38.96733 -37.27390 -34.92905 -34.41787 -32.30922 -31.54809 -31.00112 -30.66779 -29.87234 -27.39329 -25.99382 -24.70341 -24.02006 -23.45044 -22.26246 -21.19463 -20.36811 -18.96648 -18.68362 -18.28290 -17.53215 -16.95783 -16.70719 -16.29083 -15.03851 -14.91156 -14.80590 -14.77110 -14.06617 -13.80083 -13.68626 -13.37362 -13.28811 -13.08208 -13.01651 -12.95868 -12.45695 -12.29212 -11.82496 -11.62299 -11.29019 -11.18449 -10.90487 -10.70200 -10.56036 -10.39372 -10.31165 -10.28175 -10.05893 -10.01713 -9.82615 -9.61610 -9.27049 -9.19338 -8.70294 -8.41246 -6.61229 -5.73524 -3.15210 -0.01406 0.27587 1.43391 1.67098 2.76652 2.91859 3.13088 3.41138 3.41550 3.48434 3.49752 3.82592 3.86024 4.29424 4.46090 4.54714 4.72517 4.86713 5.28272 5.34156 5.39535 5.45270 5.52911 5.64361 5.65438 5.73346 5.81155 6.00057 6.07452 6.21159 6.29374 6.37070 6.42642 6.58032 6.65863 6.72122 6.83834 6.95479 7.02714 7.07097 7.35058 7.43652 7.66607 7.81402 7.85927 8.30864 8.50051 9.26543 9.90056 10.47359 11.34855 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.003350 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.607628 B = 8355.314037 C = 9539.649149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.183 3.817 3 N -0.678 5.678 4 C 0.609 3.391 5 O -0.510 6.510 6 C 0.247 3.753 7 N -0.492 5.492 8 C 0.441 3.559 9 N -0.445 5.445 10 C 0.206 3.794 11 C -0.221 4.221 12 C 0.172 3.828 13 N -0.330 5.330 14 N -0.271 5.271 15 C -0.144 4.144 16 C 0.149 3.851 17 N -0.590 5.590 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.170 3.830 27 C -0.145 4.145 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.414 0.586 32 H 0.193 0.807 33 H 0.176 0.824 34 H 0.185 0.815 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.013 0.987 39 H 0.253 0.747 40 H 0.091 0.909 41 H 0.019 0.981 42 H 0.075 0.925 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 20.399 4.778 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.099 3.901 3 N -0.330 5.330 4 C 0.389 3.611 5 O -0.383 6.383 6 C -0.037 4.037 7 N -0.225 5.225 8 C 0.080 3.920 9 N -0.159 5.159 10 C 0.019 3.981 11 C -0.246 4.246 12 C 0.035 3.965 13 N -0.111 5.111 14 N -0.105 5.105 15 C -0.184 4.184 16 C 0.022 3.978 17 N -0.313 5.313 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.205 1.205 26 C 0.043 3.957 27 C -0.185 4.185 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.251 0.749 32 H 0.209 0.791 33 H 0.194 0.806 34 H 0.202 0.798 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.094 0.906 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.818 19.094 4.807 21.574 hybrid contribution 0.644 0.062 0.194 0.676 sum -8.174 19.156 5.001 21.419 Atomic orbital electron populations 1.22248 0.94990 1.02295 1.02511 1.20454 0.92893 0.78907 0.97896 1.45981 1.51420 1.11726 1.23850 1.16295 0.80780 0.80644 0.83409 1.90767 1.37422 1.74538 1.35622 1.24485 0.93862 0.96977 0.88326 1.70917 1.20708 1.03146 1.27719 1.22726 0.93070 0.92995 0.83194 1.68101 1.16305 1.00307 1.31227 1.23666 0.91350 0.91938 0.91128 1.22007 1.02333 1.01606 0.98692 1.22223 0.95291 0.80118 0.98845 1.49087 1.33495 1.10025 1.18501 1.78933 1.20283 0.89824 1.21425 1.22431 0.99161 0.99894 0.96933 1.20843 0.90774 0.96138 0.90001 1.44040 1.48310 1.39583 0.99378 1.19206 1.09835 1.02860 1.06123 0.91692 1.25026 0.97228 0.97396 1.00043 1.70034 1.37770 1.28871 1.17955 0.86295 0.78783 0.83801 0.77927 1.21491 1.21853 1.20526 1.20774 0.86729 0.97404 0.90751 1.22534 1.01613 1.00010 0.94310 0.93041 0.91729 0.90908 0.74883 0.79061 0.80635 0.79817 0.90860 0.91305 0.92945 0.96865 0.93677 0.89099 0.96286 0.90639 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 8.40 37.16 0.31 -2.20 16 2 C 0.18 3.25 0.66 -131.78 -0.09 3.16 16 3 N -0.68 -12.15 4.10 -48.41 -0.20 -12.35 16 4 C 0.61 11.23 7.26 -12.20 -0.09 11.15 16 5 O -0.51 -10.08 13.29 5.35 0.07 -10.01 16 6 C 0.25 4.40 7.92 -156.79 -1.24 3.15 16 7 N -0.49 -8.69 10.89 -12.23 -0.13 -8.82 16 8 C 0.44 6.57 8.98 -323.04 -2.90 3.67 16 9 N -0.45 -5.33 10.48 -13.79 -0.14 -5.47 16 10 C 0.21 1.20 11.27 -17.07 -0.19 1.01 16 11 C -0.22 -0.81 10.06 -39.77 -0.40 -1.21 16 12 C 0.17 1.17 11.32 -16.54 -0.19 0.98 16 13 N -0.33 -4.25 3.91 -13.80 -0.05 -4.31 16 14 N -0.27 -4.44 12.78 32.02 0.41 -4.03 16 15 C -0.14 -2.78 4.67 -26.61 -0.12 -2.91 16 16 C 0.15 3.36 6.26 -3.71 -0.02 3.34 16 17 N -0.59 -15.00 2.99 -172.32 -0.52 -15.52 16 18 C -0.25 -6.98 9.58 -15.06 -0.14 -7.12 16 19 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 20 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 21 N -0.90 -26.31 11.19 55.49 0.62 -25.69 16 22 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.17 3.98 5.03 -3.71 -0.02 3.97 16 27 C -0.15 -2.71 4.96 -26.61 -0.13 -2.84 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.20 6.17 -51.93 -0.32 0.88 16 31 H 0.41 7.53 6.94 -40.82 -0.28 7.24 16 32 H 0.19 0.24 8.06 -52.49 -0.42 -0.19 16 33 H 0.18 -0.17 8.06 -52.49 -0.42 -0.59 16 34 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 35 H 0.07 1.42 6.20 -51.93 -0.32 1.10 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 38 H 0.01 0.32 7.74 -51.93 -0.40 -0.08 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.09 2.39 6.03 -51.93 -0.31 2.08 16 41 H 0.02 0.47 6.94 -51.93 -0.36 0.11 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -36.28 350.84 -10.35 -46.63 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.34 Total: 3.24 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: -5.31 Total: 14.10 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -0.02 Total: -76.18 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.28 -10.35 -46.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045591367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.042 kcal (2) G-P(sol) polarization free energy of solvation -36.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds