Wall clock time and date at job start Tue Mar 31 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.64267 * 2 1 4 4 C 1.54327 * 110.71823 * 123.14609 * 2 1 3 5 5 N 1.47019 * 107.27068 * 140.73265 * 4 2 1 6 6 C 1.34777 * 125.64530 * 181.01985 * 5 4 2 7 7 O 1.21565 * 120.00467 * 5.78683 * 6 5 4 8 8 C 1.47727 * 119.99637 * 185.78244 * 6 5 4 9 9 C 1.40112 * 120.35220 * 24.69832 * 8 6 5 10 10 N 1.31265 * 121.14926 * 180.28998 * 9 8 6 11 11 C 1.32710 * 121.80055 * 359.75042 * 10 9 8 12 12 C 1.40789 * 120.68072 * 0.02562 * 11 10 9 13 13 C 1.39429 * 120.34915 * 204.47615 * 8 6 5 14 14 N 1.35338 * 107.75579 * 179.97438 * 12 11 10 15 15 N 1.28658 * 109.99822 * 359.97438 * 14 12 11 16 16 N 1.37125 * 133.40866 * 179.97438 * 11 10 9 17 17 C 1.46501 * 126.58502 * 359.97438 * 16 11 10 18 18 C 1.47429 * 108.70710 * 1.28616 * 5 4 2 19 19 C 1.55135 * 104.71572 * 335.55256 * 18 5 4 20 20 H 1.09003 * 111.22649 * 279.17569 * 19 18 5 21 21 N 1.46499 * 110.90143 * 155.27630 * 19 18 5 22 22 C 1.36936 * 120.00128 * 92.97636 * 21 19 18 23 23 H 1.08003 * 120.00213 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00232 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00327 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 119.99845 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.46890 * 89.99726 * 26 24 22 28 28 H 1.48491 * 109.46857 * 209.99669 * 26 24 22 29 29 H 1.48496 * 109.46997 * 330.00028 * 26 24 22 30 30 H 1.08996 * 109.46883 * 298.31423 * 1 2 3 31 31 H 1.08998 * 109.46948 * 58.31156 * 1 2 3 32 32 H 1.08997 * 109.47027 * 178.31087 * 1 2 3 33 33 H 1.08999 * 109.88385 * 21.31415 * 4 2 1 34 34 H 1.09003 * 110.00872 * 260.22102 * 4 2 1 35 35 H 1.08002 * 119.43261 * 0.06712 * 9 8 6 36 36 H 1.07999 * 120.95601 * 359.97438 * 13 8 6 37 37 H 1.08998 * 109.46977 * 270.01801 * 17 16 11 38 38 H 1.09000 * 109.47272 * 30.01642 * 17 16 11 39 39 H 1.08997 * 109.46583 * 150.01980 * 17 16 11 40 40 H 1.08989 * 110.36636 * 94.47726 * 18 5 4 41 41 H 1.08999 * 110.36846 * 216.81156 * 18 5 4 42 42 H 0.97000 * 120.00377 * 272.97605 * 21 19 18 43 43 H 0.96996 * 120.00101 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0760 -0.7893 1.2086 5 7 3.2470 -1.5462 0.7426 6 6 3.9956 -2.3768 1.4951 7 8 3.6608 -2.6319 2.6355 8 6 5.2230 -2.9775 0.9338 9 6 5.9026 -2.3478 -0.1173 10 7 6.9914 -2.8705 -0.6315 11 6 7.5004 -4.0102 -0.1807 12 6 6.8818 -4.7048 0.8762 13 6 5.7200 -4.1746 1.4475 14 7 7.6109 -5.8185 1.1207 15 7 8.6139 -5.8730 0.3169 16 7 8.5968 -4.7559 -0.5298 17 6 9.5635 -4.4456 -1.5860 18 6 3.4707 -1.2413 -0.6824 19 6 2.0828 -0.7949 -1.2124 20 1 1.4510 -1.6543 -1.4371 21 7 2.2251 0.0698 -2.3864 22 6 2.1937 -0.4719 -3.6437 23 1 2.0644 -1.5367 -3.7698 24 6 2.3280 0.3475 -4.7561 25 7 2.2983 -0.1733 -5.9645 26 14 2.5524 2.1891 -4.5379 27 1 4.0005 2.5032 -4.4405 28 1 1.9690 2.9003 -5.7037 29 1 1.8661 2.6277 -3.2963 30 1 -0.3633 0.4874 0.9047 31 1 -0.3633 0.5398 -0.8744 32 1 -0.3633 -1.0272 -0.0303 33 1 1.3140 -1.4755 1.5781 34 1 2.3706 -0.1012 2.0010 35 1 5.5222 -1.4180 -0.5137 36 1 5.2198 -4.6806 2.2600 37 1 9.2323 -4.8911 -2.5240 38 1 9.6386 -3.3646 -1.7037 39 1 10.5389 -4.8503 -1.3160 40 1 4.1969 -0.4356 -0.7884 41 1 3.8101 -2.1315 -1.2120 42 1 2.3416 1.0261 -2.2732 43 1 2.3926 0.3993 -6.7418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054916113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:41 Heat of formation + Delta-G solvation = 125.855574 kcal Electronic energy + Delta-G solvation = -27929.490729 eV Core-core repulsion = 24013.128872 eV Total energy + Delta-G solvation = -3916.361857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.57549 -40.41090 -38.61740 -37.68118 -35.11999 -34.37297 -32.92904 -32.33794 -31.27099 -30.74187 -28.18978 -27.98399 -26.76488 -24.89270 -24.49260 -23.56915 -21.73806 -21.58824 -20.37194 -19.98701 -18.72822 -18.07411 -17.67727 -16.73485 -16.59924 -16.26195 -16.24597 -15.33835 -14.74436 -14.40185 -14.27359 -13.95145 -13.73007 -13.64802 -13.37770 -13.32334 -13.21789 -13.04615 -12.89425 -12.72291 -12.68798 -12.14376 -11.97956 -11.83611 -11.51932 -11.25265 -11.20790 -10.85716 -10.76035 -10.46669 -10.36083 -10.14299 -9.74000 -9.68328 -9.49160 -9.17199 -9.13698 -8.59696 -7.49546 -5.92529 -3.31715 -0.02351 0.43091 1.52365 1.83726 2.60655 2.81503 3.26224 3.28504 3.36033 3.41587 3.53434 3.86428 4.00441 4.25930 4.41150 4.43100 4.44789 4.73821 4.81251 4.87306 4.97492 5.01284 5.11310 5.14209 5.29539 5.40747 5.44395 5.49699 5.56163 5.62487 5.65279 5.75717 5.83359 5.91826 6.00259 6.10385 6.14385 6.21410 6.27976 6.41540 6.61044 7.26548 7.46337 7.54950 7.80449 8.03909 8.25484 9.01610 9.73423 9.90518 11.24839 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.003707 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.456477 B = 7551.666040 C = 9573.538648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 H 0.083 0.917 4 C 0.118 3.882 5 N -0.607 5.607 6 C 0.584 3.416 7 O -0.540 6.540 8 C -0.201 4.201 9 C 0.205 3.795 10 N -0.483 5.483 11 C 0.288 3.712 12 C -0.077 4.077 13 C 0.078 3.922 14 N -0.198 5.198 15 N 0.008 4.992 16 N -0.385 5.385 17 C 0.101 3.899 18 C 0.059 3.941 19 C 0.184 3.816 20 H 0.081 0.919 21 N -0.732 5.732 22 C -0.257 4.257 23 H 0.092 0.908 24 C 0.013 3.987 25 N -0.927 5.927 26 Si 0.882 3.118 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.275 1.275 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.192 0.808 36 H 0.163 0.837 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.365 0.635 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.229 -3.622 12.671 15.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 H 0.102 0.898 4 C -0.004 4.004 5 N -0.340 5.340 6 C 0.371 3.629 7 O -0.418 6.418 8 C -0.210 4.210 9 C 0.032 3.968 10 N -0.196 5.196 11 C 0.045 3.955 12 C -0.203 4.203 13 C 0.048 3.952 14 N -0.078 5.078 15 N 0.026 4.974 16 N -0.181 5.181 17 C -0.040 4.040 18 C -0.066 4.066 19 C 0.072 3.928 20 H 0.099 0.901 21 N -0.373 5.373 22 C -0.386 4.386 23 H 0.110 0.890 24 C -0.184 4.184 25 N -0.573 5.573 26 Si 0.712 3.288 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.201 1.201 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.208 0.792 36 H 0.180 0.820 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.198 0.802 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.400 -4.894 12.658 16.509 hybrid contribution -0.398 1.827 0.054 1.870 sum 9.002 -3.068 12.712 15.876 Atomic orbital electron populations 1.21666 0.93576 1.02198 1.01850 1.22584 0.96888 0.99703 0.94670 0.89833 1.22025 0.87174 0.94399 0.96849 1.48322 1.29558 1.43851 1.12241 1.17340 0.82159 0.78538 0.84816 1.90789 1.71693 1.61294 1.18030 1.20675 0.99890 0.98661 1.01779 1.23876 0.86637 0.98136 0.88151 1.66779 1.13662 1.09288 1.29908 1.19643 0.89935 0.92370 0.93597 1.20337 1.01291 0.96525 1.02119 1.20976 0.88844 0.91099 0.94322 1.74850 1.00830 1.15922 1.16243 1.81728 1.14678 1.02243 0.98726 1.49982 1.20760 1.17481 1.29856 1.22118 0.90793 1.03764 0.87351 1.23869 1.02833 1.01006 0.78909 1.21389 0.91645 0.93916 0.85874 0.90150 1.42647 1.87789 1.05027 1.01847 1.19051 1.43717 0.94713 0.81133 0.88988 1.24676 1.01216 0.97455 0.95027 1.69693 1.55872 1.34637 0.97093 0.86603 0.78096 0.86937 0.77184 1.20883 1.21633 1.20140 0.93005 0.91461 0.92455 0.91007 0.91493 0.79158 0.81994 0.89536 0.88198 0.88397 0.90600 0.90203 0.80152 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.14 37.16 0.34 -1.27 16 2 C -0.12 -1.52 3.18 -88.78 -0.28 -1.80 16 3 H 0.08 1.05 8.00 -51.93 -0.42 0.63 16 4 C 0.12 1.45 6.47 -3.06 -0.02 1.43 16 5 N -0.61 -8.07 3.32 -171.53 -0.57 -8.64 16 6 C 0.58 8.25 7.65 -12.38 -0.09 8.16 16 7 O -0.54 -8.95 16.98 5.31 0.09 -8.86 16 8 C -0.20 -2.59 5.67 -104.87 -0.59 -3.19 16 9 C 0.21 2.59 9.23 -17.09 -0.16 2.43 16 10 N -0.48 -6.54 10.37 -12.03 -0.12 -6.66 16 11 C 0.29 3.90 8.05 -155.92 -1.26 2.64 16 12 C -0.08 -1.05 7.27 -84.73 -0.62 -1.67 16 13 C 0.08 0.99 9.76 -38.51 -0.38 0.61 16 14 N -0.20 -2.77 12.40 32.17 0.40 -2.38 16 15 N 0.01 0.10 13.71 60.35 0.83 0.93 16 16 N -0.38 -4.56 4.10 -67.18 -0.28 -4.83 16 17 C 0.10 0.73 11.54 59.85 0.69 1.42 16 18 C 0.06 0.83 4.69 -2.40 -0.01 0.81 16 19 C 0.18 2.92 3.18 -65.66 -0.21 2.71 16 20 H 0.08 1.37 8.00 -51.93 -0.42 0.95 16 21 N -0.73 -14.67 5.04 -51.23 -0.26 -14.93 16 22 C -0.26 -6.44 10.44 -15.06 -0.16 -6.59 16 23 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 24 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 25 N -0.93 -27.21 13.97 55.49 0.78 -26.44 16 26 Si 0.88 20.14 27.74 -169.99 -4.71 15.42 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.28 -5.81 6.52 56.52 0.37 -5.44 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.07 0.87 7.82 -51.93 -0.41 0.47 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.19 2.20 4.59 -52.49 -0.24 1.96 16 36 H 0.16 1.82 7.90 -52.49 -0.41 1.41 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 1.00 6.84 -51.94 -0.36 0.65 16 41 H 0.08 1.15 6.82 -51.93 -0.35 0.79 16 42 H 0.36 7.20 5.62 -40.82 -0.23 6.97 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -31.75 359.09 -6.66 -38.42 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.38 Total: 6.60 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -2.84 Total: 5.95 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.77 Total: -62.95 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.71 Total: 15.42 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.75 -6.66 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054916113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.272 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds