Wall clock time and date at job start Tue Mar 31 2020 05:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.88854 * 2 1 4 4 C 1.55126 * 110.94170 * 124.07820 * 2 1 3 5 5 N 1.47430 * 104.72589 * 155.28528 * 4 2 1 6 6 C 1.34777 * 125.64536 * 155.81702 * 5 4 2 7 7 O 1.21543 * 120.00316 * 4.57487 * 6 5 4 8 8 C 1.47874 * 119.99311 * 184.57478 * 6 5 4 9 9 C 1.39453 * 121.11951 * 315.14985 * 8 6 5 10 10 C 1.38617 * 119.37488 * 180.02562 * 9 8 6 11 11 N 1.31580 * 121.63797 * 359.94503 * 10 9 8 12 12 C 1.32212 * 121.87092 * 0.02562 * 11 10 9 13 13 C 1.40878 * 121.11161 * 135.10916 * 8 6 5 14 14 N 1.34385 * 135.14521 * 0.02562 * 13 8 6 15 15 N 1.28700 * 109.15354 * 179.97438 * 14 13 8 16 16 N 1.28780 * 111.75373 * 0.02562 * 15 14 13 17 17 C 1.46499 * 125.87060 * 179.97438 * 16 15 14 18 18 C 1.47021 * 108.69866 * 335.55706 * 5 4 2 19 19 C 1.54319 * 107.27592 * 1.28341 * 18 5 4 20 20 H 1.08997 * 110.72113 * 140.55303 * 19 18 5 21 21 N 1.46496 * 110.72030 * 263.83249 * 19 18 5 22 22 C 1.36939 * 120.00199 * 273.54348 * 21 19 18 23 23 H 1.08005 * 119.99797 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00378 * 179.97438 * 22 21 19 25 25 N 1.31613 * 120.00065 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99956 * 180.02562 * 24 22 21 27 27 H 1.48490 * 109.47137 * 59.99661 * 26 24 22 28 28 H 1.48500 * 109.47069 * 180.02562 * 26 24 22 29 29 H 1.48509 * 109.46709 * 299.99649 * 26 24 22 30 30 H 1.08998 * 109.46827 * 183.87781 * 1 2 3 31 31 H 1.08996 * 109.46735 * 303.87878 * 1 2 3 32 32 H 1.09004 * 109.47100 * 63.87905 * 1 2 3 33 33 H 1.09007 * 110.49593 * 36.44452 * 4 2 1 34 34 H 1.08997 * 110.34824 * 274.05386 * 4 2 1 35 35 H 1.07995 * 120.30668 * 359.97438 * 9 8 6 36 36 H 1.08004 * 119.17954 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.46748 * 90.02462 * 17 16 15 38 38 H 1.08993 * 109.47461 * 210.02044 * 17 16 15 39 39 H 1.08995 * 109.46881 * 330.02922 * 17 16 15 40 40 H 1.09005 * 109.87957 * 120.70392 * 18 5 4 41 41 H 1.09002 * 109.87689 * 241.71240 * 18 5 4 42 42 H 0.97003 * 120.00342 * 93.54579 * 21 19 18 43 43 H 0.97005 * 120.00171 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0844 -0.8118 1.2000 5 7 3.4281 -1.2423 0.7724 6 6 4.4490 -1.5604 1.5927 7 8 4.2772 -1.5845 2.7957 8 6 5.7782 -1.8802 1.0290 9 6 5.9094 -2.7236 -0.0738 10 6 7.1731 -2.9993 -0.5723 11 7 8.2561 -2.4837 -0.0314 12 6 8.1979 -1.6772 1.0146 13 6 6.9543 -1.3423 1.5876 14 7 7.2322 -0.5211 2.6144 15 7 8.5059 -0.3520 2.6872 16 7 9.1277 -1.0081 1.7699 17 6 10.5784 -1.0358 1.5678 18 6 3.4678 -1.2731 -0.6969 19 6 2.0861 -0.8075 -1.2026 20 1 2.1915 -0.1692 -2.0799 21 7 1.2273 -1.9573 -1.4964 22 6 1.2818 -2.5560 -2.7268 23 1 1.9583 -2.1807 -3.4804 24 6 0.4684 -3.6459 -3.0050 25 7 -0.3556 -4.1035 -2.0865 26 14 0.5434 -4.4630 -4.6832 27 1 1.9178 -4.9698 -4.9260 28 1 -0.4170 -5.5948 -4.7260 29 1 0.1882 -3.4732 -5.7319 30 1 -0.3633 -1.0253 0.0695 31 1 -0.3633 0.5729 0.8532 32 1 -0.3633 0.4525 -0.9227 33 1 1.4537 -1.6784 1.3985 34 1 2.1524 -0.1803 2.0858 35 1 5.0348 -3.1584 -0.5344 36 1 7.2711 -3.6532 -1.4263 37 1 11.0101 -1.8530 2.1456 38 1 10.7951 -1.1846 0.5101 39 1 11.0092 -0.0905 1.8976 40 1 4.2425 -0.5982 -1.0610 41 1 3.6685 -2.2877 -1.0411 42 1 0.6199 -2.2946 -0.8194 43 1 -0.9243 -4.8649 -2.2811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055014241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:50 Heat of formation + Delta-G solvation = 128.244833 kcal Electronic energy + Delta-G solvation = -28297.709274 eV Core-core repulsion = 24381.451023 eV Total energy + Delta-G solvation = -3916.258251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.52715 -40.18127 -38.90332 -37.59458 -35.22582 -34.05547 -32.97802 -31.90476 -30.99520 -30.51590 -28.24572 -27.84602 -26.69384 -25.24770 -23.97121 -23.80733 -22.71864 -21.59346 -19.54524 -19.33390 -18.96591 -17.75110 -17.60369 -17.19332 -16.94586 -15.87099 -15.80854 -15.05617 -14.82981 -14.62027 -14.29525 -13.99595 -13.81530 -13.59448 -13.32409 -13.21687 -13.02344 -12.86316 -12.58275 -12.43708 -12.16715 -11.98304 -11.76723 -11.51775 -11.33341 -11.14395 -10.96641 -10.80964 -10.51350 -10.34513 -10.25781 -9.96292 -9.70945 -9.56931 -9.38177 -9.12622 -9.03782 -8.33819 -7.13446 -5.89405 -3.20122 -0.01360 0.74685 1.67659 2.04586 2.75436 3.02633 3.35350 3.40716 3.41364 3.42461 3.45509 4.02951 4.13600 4.36233 4.41211 4.47340 4.64706 4.78381 4.93577 4.97119 5.06413 5.10687 5.30520 5.34612 5.41220 5.46397 5.58352 5.64607 5.73161 5.87791 5.92369 5.96788 6.12602 6.16171 6.23161 6.29878 6.31794 6.46595 6.53587 6.68375 6.88943 7.30736 7.57639 7.70914 8.02453 8.24627 8.28540 9.40256 9.94578 10.29575 11.32376 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.003450 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.862679 B = 8113.509854 C = 9471.751303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.080 0.920 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.570 3.430 7 O -0.521 6.521 8 C 0.003 3.997 9 C -0.142 4.142 10 C 0.164 3.836 11 N -0.464 5.464 12 C 0.211 3.789 13 C -0.003 4.003 14 N -0.226 5.226 15 N -0.008 5.008 16 N -0.312 5.312 17 C 0.092 3.908 18 C 0.065 3.935 19 C 0.173 3.827 20 H 0.072 0.928 21 N -0.711 5.711 22 C -0.250 4.250 23 H 0.072 0.928 24 C -0.006 4.006 25 N -0.928 5.928 26 Si 0.907 3.093 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.388 0.612 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.932 6.067 2.863 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.098 0.902 4 C -0.005 4.005 5 N -0.330 5.330 6 C 0.356 3.644 7 O -0.398 6.398 8 C -0.013 4.013 9 C -0.165 4.165 10 C -0.008 4.008 11 N -0.178 5.178 12 C -0.031 4.031 13 C -0.132 4.132 14 N -0.100 5.100 15 N 0.010 4.990 16 N -0.114 5.114 17 C -0.048 4.048 18 C -0.061 4.061 19 C 0.061 3.939 20 H 0.089 0.911 21 N -0.353 5.353 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.575 5.575 26 Si 0.737 3.263 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.186 0.814 36 H 0.201 0.799 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.224 0.776 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.993 6.778 4.313 19.705 hybrid contribution -0.706 -1.249 -1.328 1.955 sum 17.287 5.529 2.986 18.393 Atomic orbital electron populations 1.21545 0.93213 1.03037 1.01073 1.22670 0.97071 0.98500 0.95173 0.90197 1.22375 0.82109 0.98580 0.97478 1.48321 1.11635 1.65155 1.07883 1.17479 0.82689 0.78345 0.85872 1.90819 1.83180 1.51863 1.13908 1.19526 0.91939 0.95831 0.94020 1.22717 1.00912 0.98058 0.94855 1.22879 0.85746 0.94812 0.97328 1.66284 1.34294 1.09001 1.08193 1.19755 0.87707 0.99519 0.96142 1.20066 0.93775 1.01837 0.97478 1.75432 1.03364 1.15138 1.16103 1.78199 1.01291 1.11735 1.07744 1.46961 1.08856 1.34003 1.21607 1.22258 0.72201 1.05388 1.04955 1.23537 1.01987 1.02264 0.78326 1.21191 0.88117 0.89899 0.94730 0.91054 1.42459 1.45427 1.32677 1.14713 1.19170 1.18864 1.09472 0.90583 0.91001 1.24748 0.98852 0.98858 0.97849 1.69640 1.27154 1.27451 1.33241 0.86290 0.77249 0.78919 0.83794 1.21162 1.21737 1.21209 0.91134 0.93574 0.92039 0.90746 0.90990 0.81412 0.79946 0.89175 0.87937 0.87868 0.92632 0.89942 0.77647 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.85 37.16 0.33 -1.64 16 2 C -0.11 -1.71 3.53 -88.35 -0.31 -2.03 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.12 1.89 6.34 -2.41 -0.02 1.87 16 5 N -0.60 -10.00 3.33 -171.48 -0.57 -10.57 16 6 C 0.57 10.31 7.49 -12.32 -0.09 10.22 16 7 O -0.52 -11.12 17.31 5.33 0.09 -11.03 16 8 C 0.00 0.05 5.50 -104.50 -0.57 -0.52 16 9 C -0.14 -1.76 8.65 -38.99 -0.34 -2.10 16 10 C 0.16 1.71 11.14 -17.52 -0.20 1.51 16 11 N -0.46 -5.60 10.35 -12.38 -0.13 -5.73 16 12 C 0.21 2.89 8.08 -156.21 -1.26 1.63 16 13 C 0.00 -0.04 7.09 -84.72 -0.60 -0.64 16 14 N -0.23 -3.92 12.42 32.23 0.40 -3.52 16 15 N -0.01 -0.12 13.07 60.35 0.79 0.67 16 16 N -0.31 -3.73 3.79 -67.23 -0.26 -3.98 16 17 C 0.09 0.56 11.41 59.85 0.68 1.24 16 18 C 0.06 1.01 5.34 -3.07 -0.02 1.00 16 19 C 0.17 2.97 3.36 -66.10 -0.22 2.74 16 20 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 21 N -0.71 -15.47 4.61 -51.65 -0.24 -15.71 16 22 C -0.25 -6.13 9.98 -15.06 -0.15 -6.28 16 23 H 0.07 1.68 7.83 -52.48 -0.41 1.27 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 25 N -0.93 -25.96 13.06 55.49 0.72 -25.24 16 26 Si 0.91 20.64 29.55 -169.99 -5.02 15.62 16 27 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 30 H 0.07 1.23 6.38 -51.93 -0.33 0.90 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.30 7.99 -51.92 -0.41 0.88 16 34 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 35 H 0.17 1.97 5.76 -52.49 -0.30 1.67 16 36 H 0.18 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.35 5.83 -51.93 -0.30 1.05 16 42 H 0.39 9.16 6.10 -40.82 -0.25 8.91 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -33.28 360.52 -7.01 -40.29 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.37 Total: 7.01 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -2.86 Total: 6.76 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: 0.72 Total: -64.08 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.28 -7.01 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055014241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.534 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds