Wall clock time and date at job start Tue Mar 31 2020 05:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.88854 * 2 1 4 4 C 1.55126 * 110.94170 * 124.07820 * 2 1 3 5 5 N 1.47430 * 104.72589 * 155.28528 * 4 2 1 6 6 C 1.34777 * 125.64536 * 155.81702 * 5 4 2 7 7 O 1.21543 * 120.00316 * 4.57487 * 6 5 4 8 8 C 1.47874 * 119.99311 * 184.57478 * 6 5 4 9 9 C 1.39453 * 121.11951 * 315.14985 * 8 6 5 10 10 C 1.38617 * 119.37488 * 180.02562 * 9 8 6 11 11 N 1.31580 * 121.63797 * 359.94503 * 10 9 8 12 12 C 1.32212 * 121.87092 * 0.02562 * 11 10 9 13 13 C 1.40878 * 121.11161 * 135.10916 * 8 6 5 14 14 N 1.34385 * 135.14521 * 0.02562 * 13 8 6 15 15 N 1.28700 * 109.15354 * 179.97438 * 14 13 8 16 16 N 1.28780 * 111.75373 * 0.02562 * 15 14 13 17 17 C 1.46499 * 125.87060 * 179.97438 * 16 15 14 18 18 C 1.47021 * 108.69866 * 335.55706 * 5 4 2 19 19 C 1.54319 * 107.27592 * 1.28341 * 18 5 4 20 20 H 1.08997 * 110.72113 * 140.55303 * 19 18 5 21 21 N 1.46496 * 110.72030 * 263.83249 * 19 18 5 22 22 C 1.36939 * 120.00199 * 273.54348 * 21 19 18 23 23 H 1.08005 * 119.99797 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00378 * 179.97438 * 22 21 19 25 25 N 1.31613 * 120.00065 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99956 * 180.02562 * 24 22 21 27 27 H 1.48490 * 109.47137 * 59.99661 * 26 24 22 28 28 H 1.48500 * 109.47069 * 180.02562 * 26 24 22 29 29 H 1.48509 * 109.46709 * 299.99649 * 26 24 22 30 30 H 1.08998 * 109.46827 * 183.87781 * 1 2 3 31 31 H 1.08996 * 109.46735 * 303.87878 * 1 2 3 32 32 H 1.09004 * 109.47100 * 63.87905 * 1 2 3 33 33 H 1.09007 * 110.49593 * 36.44452 * 4 2 1 34 34 H 1.08997 * 110.34824 * 274.05386 * 4 2 1 35 35 H 1.07995 * 120.30668 * 359.97438 * 9 8 6 36 36 H 1.08004 * 119.17954 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.46748 * 90.02462 * 17 16 15 38 38 H 1.08993 * 109.47461 * 210.02044 * 17 16 15 39 39 H 1.08995 * 109.46881 * 330.02922 * 17 16 15 40 40 H 1.09005 * 109.87957 * 120.70392 * 18 5 4 41 41 H 1.09002 * 109.87689 * 241.71240 * 18 5 4 42 42 H 0.97003 * 120.00342 * 93.54579 * 21 19 18 43 43 H 0.97005 * 120.00171 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0844 -0.8118 1.2000 5 7 3.4281 -1.2423 0.7724 6 6 4.4490 -1.5604 1.5927 7 8 4.2772 -1.5845 2.7957 8 6 5.7782 -1.8802 1.0290 9 6 5.9094 -2.7236 -0.0738 10 6 7.1731 -2.9993 -0.5723 11 7 8.2561 -2.4837 -0.0314 12 6 8.1979 -1.6772 1.0146 13 6 6.9543 -1.3423 1.5876 14 7 7.2322 -0.5211 2.6144 15 7 8.5059 -0.3520 2.6872 16 7 9.1277 -1.0081 1.7699 17 6 10.5784 -1.0358 1.5678 18 6 3.4678 -1.2731 -0.6969 19 6 2.0861 -0.8075 -1.2026 20 1 2.1915 -0.1692 -2.0799 21 7 1.2273 -1.9573 -1.4964 22 6 1.2818 -2.5560 -2.7268 23 1 1.9583 -2.1807 -3.4804 24 6 0.4684 -3.6459 -3.0050 25 7 -0.3556 -4.1035 -2.0865 26 14 0.5434 -4.4630 -4.6832 27 1 1.9178 -4.9698 -4.9260 28 1 -0.4170 -5.5948 -4.7260 29 1 0.1882 -3.4732 -5.7319 30 1 -0.3633 -1.0253 0.0695 31 1 -0.3633 0.5729 0.8532 32 1 -0.3633 0.4525 -0.9227 33 1 1.4537 -1.6784 1.3985 34 1 2.1524 -0.1803 2.0858 35 1 5.0348 -3.1584 -0.5344 36 1 7.2711 -3.6532 -1.4263 37 1 11.0101 -1.8530 2.1456 38 1 10.7951 -1.1846 0.5101 39 1 11.0092 -0.0905 1.8976 40 1 4.2425 -0.5982 -1.0610 41 1 3.6685 -2.2877 -1.0411 42 1 0.6199 -2.2946 -0.8194 43 1 -0.9243 -4.8649 -2.2811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001055014241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:49 Heat of formation + Delta-G solvation = 104.852842 kcal Electronic energy + Delta-G solvation = -28298.723627 eV Core-core repulsion = 24381.451023 eV Total energy + Delta-G solvation = -3917.272603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.53753 -41.46482 -39.97557 -38.99780 -36.16880 -35.71098 -34.30516 -33.15337 -32.15808 -31.96096 -29.36204 -28.96061 -27.93599 -26.37643 -25.67789 -24.84322 -23.98580 -22.78109 -20.75074 -20.57041 -20.06626 -19.35435 -18.70375 -18.30508 -18.08935 -17.19179 -17.09975 -16.34703 -16.15952 -15.89875 -15.62501 -15.40142 -14.79504 -14.66058 -14.55681 -14.25738 -14.11381 -14.10074 -13.68779 -13.52148 -13.48390 -13.34163 -13.00603 -12.82714 -12.70798 -12.64267 -12.36576 -12.19665 -12.12025 -11.93871 -11.57622 -11.42288 -11.31375 -10.91894 -10.65762 -10.36853 -10.13751 -9.70883 -8.96100 -7.85047 -5.13679 -1.05320 -0.23294 0.84653 0.94767 1.48939 1.57159 1.58510 1.64209 1.77538 2.38461 2.50578 2.64234 3.06092 3.09305 3.29514 3.45980 3.60888 3.63935 3.89214 3.89808 4.04484 4.09567 4.10915 4.25425 4.31019 4.42211 4.55786 4.56555 4.59374 4.64369 4.71568 4.75413 4.88865 4.97434 5.01157 5.06748 5.18455 5.23071 5.32878 5.35754 5.57896 5.65510 6.35059 6.35603 6.36904 6.88746 6.98166 7.43852 8.16960 8.40603 9.37879 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.003450 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.862679 B = 8113.509854 C = 9471.751303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 H 0.107 0.893 4 C 0.114 3.886 5 N -0.596 5.596 6 C 0.567 3.433 7 O -0.567 6.567 8 C -0.026 4.026 9 C -0.124 4.124 10 C 0.179 3.821 11 N -0.455 5.455 12 C 0.202 3.798 13 C -0.027 4.027 14 N -0.277 5.277 15 N -0.015 5.015 16 N -0.296 5.296 17 C 0.078 3.922 18 C 0.074 3.926 19 C 0.166 3.834 20 H 0.085 0.915 21 N -0.722 5.722 22 C -0.233 4.233 23 H 0.087 0.913 24 C -0.071 4.071 25 N -0.969 5.969 26 Si 0.966 3.034 27 H -0.272 1.272 28 H -0.308 1.308 29 H -0.281 1.281 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.175 0.825 36 H 0.232 0.768 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.376 0.624 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.604 6.560 0.698 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.120 4.120 3 H 0.125 0.875 4 C -0.008 4.008 5 N -0.328 5.328 6 C 0.355 3.645 7 O -0.446 6.446 8 C -0.043 4.043 9 C -0.147 4.147 10 C 0.006 3.994 11 N -0.169 5.169 12 C -0.040 4.040 13 C -0.157 4.157 14 N -0.150 5.150 15 N 0.003 4.997 16 N -0.099 5.099 17 C -0.060 4.060 18 C -0.051 4.051 19 C 0.055 3.945 20 H 0.103 0.897 21 N -0.362 5.362 22 C -0.365 4.365 23 H 0.105 0.895 24 C -0.263 4.263 25 N -0.620 5.620 26 Si 0.796 3.204 27 H -0.198 1.198 28 H -0.235 1.235 29 H -0.207 1.207 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.193 0.807 36 H 0.248 0.752 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.209 0.791 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 20.738 7.338 2.135 22.101 hybrid contribution -1.417 -1.358 -0.667 2.073 sum 19.321 5.979 1.468 20.278 Atomic orbital electron populations 1.21468 0.93245 1.01522 1.02013 1.22635 0.96914 0.99186 0.93246 0.87536 1.22372 0.81950 0.98105 0.98345 1.48398 1.11488 1.64539 1.08332 1.17926 0.83723 0.77456 0.85434 1.90778 1.84074 1.53962 1.15828 1.19438 0.90478 0.98356 0.95985 1.22905 1.02280 0.96267 0.93253 1.23659 0.84270 0.93932 0.97542 1.66476 1.34631 1.08405 1.07343 1.19929 0.87276 1.00083 0.96674 1.20309 0.95015 1.02453 0.97875 1.75360 1.04667 1.17184 1.17823 1.78083 1.00799 1.12248 1.08521 1.47453 1.10442 1.32016 1.19972 1.22813 0.69031 1.07512 1.06647 1.23410 1.01525 1.02656 0.77525 1.21428 0.88146 0.88822 0.96093 0.89720 1.42617 1.46047 1.33793 1.13706 1.19612 1.17187 1.08257 0.91449 0.89538 1.25452 0.99660 1.00404 1.00784 1.69810 1.28884 1.28183 1.35118 0.85331 0.77208 0.77475 0.80419 1.19815 1.23509 1.20750 0.94050 0.91283 0.92173 0.92704 0.90779 0.80739 0.75207 0.87213 0.86188 0.85674 0.90008 0.90330 0.79057 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.67 8.85 71.98 0.64 -3.03 16 2 C -0.10 -2.87 3.53 -9.32 -0.03 -2.90 16 3 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 4 C 0.11 3.73 6.34 86.93 0.55 4.28 16 5 N -0.60 -19.77 3.33 -814.71 -2.71 -22.48 16 6 C 0.57 20.85 7.49 86.79 0.65 21.50 16 7 O -0.57 -25.28 17.31 -3.85 -0.07 -25.34 16 8 C -0.03 -0.82 5.50 -19.79 -0.11 -0.93 16 9 C -0.12 -2.79 8.65 22.65 0.20 -2.59 16 10 C 0.18 3.03 11.14 84.82 0.94 3.98 16 11 N -0.46 -9.51 10.35 -193.10 -2.00 -11.51 16 12 C 0.20 5.21 8.08 134.17 1.08 6.29 16 13 C -0.03 -0.86 7.09 40.07 0.28 -0.57 16 14 N -0.28 -9.83 12.42 -51.93 -0.64 -10.47 16 15 N -0.02 -0.43 13.07 37.02 0.48 0.05 16 16 N -0.30 -6.58 3.79 -366.62 -1.39 -7.97 16 17 C 0.08 0.72 11.41 127.77 1.46 2.17 16 18 C 0.07 2.17 5.34 86.73 0.46 2.63 16 19 C 0.17 5.38 3.36 46.18 0.16 5.53 16 20 H 0.09 2.59 8.12 -2.39 -0.02 2.57 16 21 N -0.72 -30.98 4.61 -317.33 -1.46 -32.45 16 22 C -0.23 -11.15 9.98 84.03 0.84 -10.31 16 23 H 0.09 3.82 7.83 -2.91 -0.02 3.79 16 24 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 25 N -0.97 -55.44 13.06 21.65 0.28 -55.16 16 26 Si 0.97 42.14 29.55 68.60 2.03 44.17 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.31 -14.16 7.11 99.48 0.71 -13.45 16 29 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 30 H 0.04 1.47 6.38 -2.39 -0.02 1.45 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 2.00 7.99 -2.38 -0.02 1.98 16 34 H 0.07 2.37 8.08 -2.39 -0.02 2.36 16 35 H 0.18 3.68 5.76 -2.91 -0.02 3.66 16 36 H 0.23 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.08 2.41 5.83 -2.39 -0.01 2.39 16 42 H 0.38 18.07 6.10 -92.71 -0.57 17.50 16 43 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 Total: -1.00 -75.48 360.52 2.60 -72.87 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.50 Total: 25.44 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 7.59 Total: 22.85 kcal Atomic # 7 Polarization: -132.55 SS G_CDS: -7.44 Total: -139.99 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.07 Total: -25.34 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -75.48 2.60 -72.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055014241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.724 kcal (2) G-P(sol) polarization free energy of solvation -75.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds