Wall clock time and date at job start Tue Mar 31 2020 05:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.63889 * 2 1 4 4 C 1.54321 * 110.87556 * 236.75251 * 2 1 3 5 5 N 1.47013 * 107.27176 * 219.37304 * 4 2 1 6 6 C 1.34782 * 125.64691 * 178.97957 * 5 4 2 7 7 O 1.21537 * 120.00228 * 354.19614 * 6 5 4 8 8 C 1.47881 * 119.99751 * 174.19606 * 6 5 4 9 9 C 1.39455 * 121.11691 * 334.22978 * 8 6 5 10 10 C 1.38613 * 119.37258 * 180.02562 * 9 8 6 11 11 N 1.31583 * 121.64302 * 0.02562 * 10 9 8 12 12 C 1.32208 * 121.86251 * 359.97375 * 11 10 9 13 13 C 1.40871 * 121.11321 * 153.94830 * 8 6 5 14 14 N 1.34396 * 135.14389 * 0.78028 * 13 8 6 15 15 N 1.28692 * 109.15129 * 179.44369 * 14 13 8 16 16 N 1.28776 * 111.75859 * 359.72661 * 15 14 13 17 17 C 1.46497 * 125.86861 * 179.97438 * 16 15 14 18 18 C 1.47526 * 108.71884 * 358.93948 * 5 4 2 19 19 C 1.54908 * 104.77837 * 24.12230 * 18 5 4 20 20 H 1.09002 * 111.00507 * 204.89998 * 19 18 5 21 21 N 1.46496 * 111.00807 * 81.08911 * 19 18 5 22 22 C 1.36933 * 120.00175 * 89.57961 * 21 19 18 23 23 H 1.08001 * 119.99971 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99945 * 180.02562 * 22 21 19 25 25 N 1.31614 * 120.00071 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99840 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47503 * 89.99683 * 26 24 22 28 28 H 1.48501 * 109.47273 * 209.99825 * 26 24 22 29 29 H 1.48501 * 109.47346 * 329.99629 * 26 24 22 30 30 H 1.08994 * 109.47385 * 296.85721 * 1 2 3 31 31 H 1.08999 * 109.47187 * 56.85988 * 1 2 3 32 32 H 1.09005 * 109.46404 * 176.85576 * 1 2 3 33 33 H 1.09003 * 109.88296 * 338.79180 * 4 2 1 34 34 H 1.09002 * 109.88213 * 99.79791 * 4 2 1 35 35 H 1.07997 * 120.31044 * 359.97438 * 9 8 6 36 36 H 1.08006 * 119.17998 * 179.97438 * 10 9 8 37 37 H 1.09004 * 109.47245 * 270.02543 * 17 16 15 38 38 H 1.08998 * 109.47285 * 30.02718 * 17 16 15 39 39 H 1.09000 * 109.47144 * 150.02660 * 17 16 15 40 40 H 1.09002 * 110.37185 * 265.31409 * 18 5 4 41 41 H 1.08997 * 110.41327 * 142.94702 * 18 5 4 42 42 H 0.97003 * 120.00034 * 269.58067 * 21 19 18 43 43 H 0.97004 * 120.00144 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0800 -0.7905 -1.2059 5 7 3.2495 -1.5469 -0.7353 6 6 4.0006 -2.3783 -1.4844 7 8 3.6693 -2.6348 -2.6253 8 6 5.2278 -2.9785 -0.9181 9 6 5.9258 -2.3528 0.1143 10 6 7.0723 -2.9473 0.6178 11 7 7.5216 -4.0903 0.1456 12 6 6.9049 -4.7322 -0.8320 13 6 5.7275 -4.2045 -1.3995 14 7 5.3568 -5.0758 -2.3532 15 7 6.1954 -6.0516 -2.3826 16 7 7.1295 -5.9048 -1.5084 17 6 8.2410 -6.8304 -1.2762 18 6 3.4657 -1.2446 0.6924 19 6 2.0790 -0.7934 1.2151 20 1 2.1814 -0.1491 2.0884 21 7 1.2295 -1.9486 1.5151 22 6 1.2527 -2.5095 2.7641 23 1 1.8975 -2.1006 3.5279 24 6 0.4481 -3.6045 3.0482 25 7 -0.3374 -4.1031 2.1172 26 14 0.4791 -4.3693 4.7521 27 1 -0.5403 -3.7117 5.6086 28 1 0.1781 -5.8198 4.6492 29 1 1.8244 -4.1844 5.3533 30 1 -0.3634 0.4642 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3632 -1.0262 -0.0564 33 1 1.3192 -1.4773 -1.5770 34 1 2.3751 -0.1016 -1.9974 35 1 5.5769 -1.4135 0.5172 36 1 7.6108 -2.4597 1.4171 37 1 7.9497 -7.5677 -0.5280 38 1 8.4921 -7.3376 -2.2077 39 1 9.1083 -6.2745 -0.9200 40 1 4.1932 -0.4406 0.8041 41 1 3.7995 -2.1360 1.2234 42 1 0.6506 -2.3161 0.8290 43 1 -0.8999 -4.8680 2.3158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055014242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:53 Heat of formation + Delta-G solvation = 132.335066 kcal Electronic energy + Delta-G solvation = -28613.880257 eV Core-core repulsion = 24697.799372 eV Total energy + Delta-G solvation = -3916.080885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.39823 -40.16201 -38.81162 -37.53192 -35.09157 -33.99888 -32.99670 -31.81333 -30.88867 -30.49537 -28.12166 -27.91943 -26.62356 -25.22276 -23.99176 -23.65226 -22.64875 -21.51969 -19.44701 -19.32426 -18.98479 -17.59965 -17.53005 -17.08108 -16.85561 -15.97523 -15.60495 -15.16524 -14.74635 -14.56896 -14.14965 -13.90760 -13.64165 -13.62128 -13.27253 -13.10726 -12.96134 -12.80003 -12.56900 -12.30851 -12.16849 -12.00827 -11.60450 -11.53749 -11.16116 -11.12409 -10.96131 -10.75224 -10.51070 -10.32265 -10.13244 -9.96352 -9.70367 -9.48012 -9.27713 -9.06292 -8.98522 -8.30011 -7.06860 -5.85497 -3.15989 0.05600 0.82606 1.80127 2.18386 2.88539 3.09947 3.37190 3.41903 3.45003 3.52246 3.65440 4.14117 4.23575 4.40871 4.49163 4.50127 4.75920 4.79416 4.94514 5.03388 5.08224 5.15593 5.28437 5.44066 5.46175 5.51118 5.58299 5.68856 5.71472 5.87405 5.91444 6.05360 6.11531 6.17073 6.26525 6.29751 6.33431 6.45257 6.55523 6.70687 6.90200 7.38620 7.60331 7.75718 8.17744 8.31690 8.36046 9.43706 9.98889 10.32854 11.36315 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.004300 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.838643 B = 6510.426562 C = 7844.870915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 H 0.081 0.919 4 C 0.117 3.883 5 N -0.593 5.593 6 C 0.567 3.433 7 O -0.517 6.517 8 C 0.004 3.996 9 C -0.149 4.149 10 C 0.159 3.841 11 N -0.462 5.462 12 C 0.209 3.791 13 C 0.004 3.996 14 N -0.216 5.216 15 N -0.009 5.009 16 N -0.313 5.313 17 C 0.093 3.907 18 C 0.058 3.942 19 C 0.172 3.828 20 H 0.075 0.925 21 N -0.708 5.708 22 C -0.250 4.250 23 H 0.073 0.927 24 C -0.006 4.006 25 N -0.926 5.926 26 Si 0.905 3.095 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.167 0.833 36 H 0.181 0.819 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.388 0.612 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.762 5.261 -3.175 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.099 0.901 4 C -0.005 4.005 5 N -0.326 5.326 6 C 0.354 3.646 7 O -0.392 6.392 8 C -0.012 4.012 9 C -0.172 4.172 10 C -0.014 4.014 11 N -0.175 5.175 12 C -0.033 4.033 13 C -0.126 4.126 14 N -0.091 5.091 15 N 0.010 4.990 16 N -0.114 5.114 17 C -0.048 4.048 18 C -0.068 4.068 19 C 0.059 3.941 20 H 0.093 0.907 21 N -0.349 5.349 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.573 5.573 26 Si 0.736 3.264 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.184 0.816 36 H 0.198 0.802 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.223 0.777 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.853 3.562 -4.511 17.807 hybrid contribution -0.304 0.060 1.326 1.362 sum 16.550 3.622 -3.184 17.238 Atomic orbital electron populations 1.21599 0.93345 1.03084 1.00922 1.22528 0.97234 0.98503 0.95086 0.90071 1.21999 0.87542 0.94302 0.96632 1.48183 1.29232 1.43473 1.11737 1.17472 0.82692 0.78982 0.85435 1.90825 1.70877 1.59539 1.17995 1.19558 0.95534 0.91409 0.94730 1.22843 0.96274 1.02714 0.95374 1.22810 0.92860 0.88754 0.96940 1.66241 1.32642 1.09145 1.09509 1.19750 0.95202 0.90881 0.97468 1.20093 0.96355 0.97585 0.98538 1.75515 1.18113 0.98833 1.16597 1.78230 0.94616 1.18498 1.07694 1.46974 1.22354 1.16275 1.25842 1.22248 0.85668 0.92287 1.04585 1.23792 1.01784 1.00656 0.80537 1.21379 0.88348 0.90000 0.94398 0.90697 1.42387 1.47557 1.32431 1.12480 1.19200 1.20315 1.09666 0.88913 0.90953 1.24758 0.99174 0.98713 0.97677 1.69657 1.28895 1.26271 1.32438 0.86233 0.77599 0.78572 0.83985 1.21564 1.21838 1.20719 0.92070 0.93665 0.91217 0.91104 0.91962 0.81565 0.80210 0.89133 0.87910 0.88044 0.92029 0.89697 0.77669 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.73 37.16 0.32 -1.68 16 2 C -0.11 -1.64 3.41 -88.78 -0.30 -1.94 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.87 6.47 -3.07 -0.02 1.85 16 5 N -0.59 -10.07 3.33 -171.54 -0.57 -10.64 16 6 C 0.57 10.82 7.66 -12.31 -0.09 10.72 16 7 O -0.52 -11.59 16.96 5.33 0.09 -11.50 16 8 C 0.00 0.07 5.68 -104.50 -0.59 -0.53 16 9 C -0.15 -1.81 8.19 -38.99 -0.32 -2.13 16 10 C 0.16 1.68 11.14 -17.52 -0.20 1.48 16 11 N -0.46 -6.01 10.35 -12.38 -0.13 -6.14 16 12 C 0.21 3.20 8.08 -156.20 -1.26 1.93 16 13 C 0.00 0.07 6.97 -84.72 -0.59 -0.53 16 14 N -0.22 -4.27 12.19 32.23 0.39 -3.87 16 15 N -0.01 -0.15 13.07 60.35 0.79 0.64 16 16 N -0.31 -4.28 3.79 -67.23 -0.26 -4.53 16 17 C 0.09 0.70 11.41 59.85 0.68 1.38 16 18 C 0.06 0.88 4.73 -2.47 -0.01 0.86 16 19 C 0.17 2.91 3.45 -65.78 -0.23 2.69 16 20 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 21 N -0.71 -16.13 4.67 -51.35 -0.24 -16.37 16 22 C -0.25 -6.41 9.97 -15.06 -0.15 -6.56 16 23 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 25 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 26 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.28 6.43 -51.93 -0.33 0.94 16 33 H 0.07 1.29 7.78 -51.93 -0.40 0.88 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.17 1.59 4.86 -52.49 -0.26 1.33 16 36 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.68 6.87 -51.93 -0.36 0.32 16 41 H 0.08 1.43 6.91 -51.93 -0.36 1.07 16 42 H 0.39 9.80 6.23 -40.82 -0.25 9.54 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -35.98 358.07 -6.99 -42.97 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.31 Total: 6.74 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -2.86 Total: 7.31 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: 0.71 Total: -67.53 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.98 -6.99 -42.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055014242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.304 kcal (2) G-P(sol) polarization free energy of solvation -35.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds