Wall clock time and date at job start Tue Mar 31 2020 05:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.63889 * 2 1 4 4 C 1.54321 * 110.87556 * 236.75251 * 2 1 3 5 5 N 1.47013 * 107.27176 * 219.37304 * 4 2 1 6 6 C 1.34782 * 125.64691 * 178.97957 * 5 4 2 7 7 O 1.21537 * 120.00228 * 354.19614 * 6 5 4 8 8 C 1.47881 * 119.99751 * 174.19606 * 6 5 4 9 9 C 1.39455 * 121.11691 * 334.22978 * 8 6 5 10 10 C 1.38613 * 119.37258 * 180.02562 * 9 8 6 11 11 N 1.31583 * 121.64302 * 0.02562 * 10 9 8 12 12 C 1.32208 * 121.86251 * 359.97375 * 11 10 9 13 13 C 1.40871 * 121.11321 * 153.94830 * 8 6 5 14 14 N 1.34396 * 135.14389 * 0.78028 * 13 8 6 15 15 N 1.28692 * 109.15129 * 179.44369 * 14 13 8 16 16 N 1.28776 * 111.75859 * 359.72661 * 15 14 13 17 17 C 1.46497 * 125.86861 * 179.97438 * 16 15 14 18 18 C 1.47526 * 108.71884 * 358.93948 * 5 4 2 19 19 C 1.54908 * 104.77837 * 24.12230 * 18 5 4 20 20 H 1.09002 * 111.00507 * 204.89998 * 19 18 5 21 21 N 1.46496 * 111.00807 * 81.08911 * 19 18 5 22 22 C 1.36933 * 120.00175 * 89.57961 * 21 19 18 23 23 H 1.08001 * 119.99971 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99945 * 180.02562 * 22 21 19 25 25 N 1.31614 * 120.00071 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99840 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47503 * 89.99683 * 26 24 22 28 28 H 1.48501 * 109.47273 * 209.99825 * 26 24 22 29 29 H 1.48501 * 109.47346 * 329.99629 * 26 24 22 30 30 H 1.08994 * 109.47385 * 296.85721 * 1 2 3 31 31 H 1.08999 * 109.47187 * 56.85988 * 1 2 3 32 32 H 1.09005 * 109.46404 * 176.85576 * 1 2 3 33 33 H 1.09003 * 109.88296 * 338.79180 * 4 2 1 34 34 H 1.09002 * 109.88213 * 99.79791 * 4 2 1 35 35 H 1.07997 * 120.31044 * 359.97438 * 9 8 6 36 36 H 1.08006 * 119.17998 * 179.97438 * 10 9 8 37 37 H 1.09004 * 109.47245 * 270.02543 * 17 16 15 38 38 H 1.08998 * 109.47285 * 30.02718 * 17 16 15 39 39 H 1.09000 * 109.47144 * 150.02660 * 17 16 15 40 40 H 1.09002 * 110.37185 * 265.31409 * 18 5 4 41 41 H 1.08997 * 110.41327 * 142.94702 * 18 5 4 42 42 H 0.97003 * 120.00034 * 269.58067 * 21 19 18 43 43 H 0.97004 * 120.00144 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0800 -0.7905 -1.2059 5 7 3.2495 -1.5469 -0.7353 6 6 4.0006 -2.3783 -1.4844 7 8 3.6693 -2.6348 -2.6253 8 6 5.2278 -2.9785 -0.9181 9 6 5.9258 -2.3528 0.1143 10 6 7.0723 -2.9473 0.6178 11 7 7.5216 -4.0903 0.1456 12 6 6.9049 -4.7322 -0.8320 13 6 5.7275 -4.2045 -1.3995 14 7 5.3568 -5.0758 -2.3532 15 7 6.1954 -6.0516 -2.3826 16 7 7.1295 -5.9048 -1.5084 17 6 8.2410 -6.8304 -1.2762 18 6 3.4657 -1.2446 0.6924 19 6 2.0790 -0.7934 1.2151 20 1 2.1814 -0.1491 2.0884 21 7 1.2295 -1.9486 1.5151 22 6 1.2527 -2.5095 2.7641 23 1 1.8975 -2.1006 3.5279 24 6 0.4481 -3.6045 3.0482 25 7 -0.3374 -4.1031 2.1172 26 14 0.4791 -4.3693 4.7521 27 1 -0.5403 -3.7117 5.6086 28 1 0.1781 -5.8198 4.6492 29 1 1.8244 -4.1844 5.3533 30 1 -0.3634 0.4642 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3632 -1.0262 -0.0564 33 1 1.3192 -1.4773 -1.5770 34 1 2.3751 -0.1016 -1.9974 35 1 5.5769 -1.4135 0.5172 36 1 7.6108 -2.4597 1.4171 37 1 7.9497 -7.5677 -0.5280 38 1 8.4921 -7.3376 -2.2077 39 1 9.1083 -6.2745 -0.9200 40 1 4.1932 -0.4406 0.8041 41 1 3.7995 -2.1360 1.2234 42 1 0.6506 -2.3161 0.8290 43 1 -0.8999 -4.8680 2.3158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001055014242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:52 Heat of formation + Delta-G solvation = 104.888226 kcal Electronic energy + Delta-G solvation = -28615.070441 eV Core-core repulsion = 24697.799372 eV Total energy + Delta-G solvation = -3917.271069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.50957 -41.44554 -39.91095 -38.94060 -36.14568 -35.70005 -34.35440 -33.08707 -32.17813 -31.91314 -29.42000 -28.96069 -27.87196 -26.39891 -25.73818 -24.77213 -23.94054 -22.74904 -20.65000 -20.59137 -20.12097 -19.31711 -18.66520 -18.21702 -18.07869 -17.37203 -16.80657 -16.54194 -16.15718 -15.87245 -15.50863 -15.29960 -14.82874 -14.65916 -14.54431 -14.17551 -14.07155 -14.02045 -13.71999 -13.46570 -13.45799 -13.40524 -12.99637 -12.85536 -12.80574 -12.62874 -12.24090 -12.20013 -12.12982 -11.92395 -11.47314 -11.43706 -11.29737 -10.97749 -10.62745 -10.32005 -10.11930 -9.69384 -8.92528 -7.90591 -5.18126 -1.04573 -0.19233 0.88144 0.96556 1.48305 1.49406 1.57114 1.59721 1.87599 2.49060 2.56527 2.58512 3.12407 3.14820 3.32689 3.41806 3.62063 3.66782 3.86951 3.97152 4.04559 4.13902 4.21766 4.22756 4.35128 4.44888 4.52473 4.56706 4.67111 4.68226 4.72696 4.81525 4.89506 4.99576 5.04178 5.08975 5.23948 5.27078 5.36660 5.43265 5.56749 5.63879 6.30230 6.38939 6.42386 6.98837 7.01609 7.37363 8.15146 8.35308 9.33330 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.004300 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.838643 B = 6510.426562 C = 7844.870915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 H 0.130 0.870 4 C 0.114 3.886 5 N -0.593 5.593 6 C 0.559 3.441 7 O -0.570 6.570 8 C -0.038 4.038 9 C -0.118 4.118 10 C 0.174 3.826 11 N -0.457 5.457 12 C 0.197 3.803 13 C -0.031 4.031 14 N -0.278 5.278 15 N -0.025 5.025 16 N -0.297 5.297 17 C 0.078 3.922 18 C 0.063 3.937 19 C 0.157 3.843 20 H 0.100 0.900 21 N -0.725 5.725 22 C -0.227 4.227 23 H 0.092 0.908 24 C -0.080 4.080 25 N -0.975 5.975 26 Si 0.964 3.036 27 H -0.287 1.287 28 H -0.312 1.312 29 H -0.261 1.261 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.032 0.968 34 H 0.082 0.918 35 H 0.200 0.800 36 H 0.241 0.759 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.069 0.931 42 H 0.370 0.630 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.385 8.137 -0.365 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.115 4.115 3 H 0.148 0.852 4 C -0.009 4.009 5 N -0.324 5.324 6 C 0.347 3.653 7 O -0.450 6.450 8 C -0.054 4.054 9 C -0.141 4.141 10 C 0.001 3.999 11 N -0.170 5.170 12 C -0.044 4.044 13 C -0.162 4.162 14 N -0.151 5.151 15 N -0.006 5.006 16 N -0.100 5.100 17 C -0.060 4.060 18 C -0.061 4.061 19 C 0.047 3.953 20 H 0.118 0.882 21 N -0.364 5.364 22 C -0.359 4.359 23 H 0.110 0.890 24 C -0.272 4.272 25 N -0.626 5.626 26 Si 0.795 3.205 27 H -0.215 1.215 28 H -0.239 1.239 29 H -0.185 1.185 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.216 0.784 36 H 0.257 0.743 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.087 0.913 42 H 0.202 0.798 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 20.539 6.476 -1.679 21.601 hybrid contribution -1.304 -0.709 0.503 1.567 sum 19.235 5.767 -1.177 20.115 Atomic orbital electron populations 1.21536 0.94334 1.00706 1.02003 1.22534 0.96298 1.00094 0.92614 0.85246 1.22086 0.86665 0.93951 0.98162 1.48307 1.28827 1.42818 1.12451 1.17982 0.83572 0.78671 0.85060 1.90777 1.72538 1.61328 1.20364 1.19629 0.96006 0.92287 0.97508 1.23304 0.95436 1.02859 0.92537 1.23888 0.91904 0.87422 0.96722 1.66457 1.32204 1.09849 1.08531 1.19943 0.94789 0.91485 0.98188 1.20523 0.98029 0.98474 0.99136 1.75405 1.20251 1.00511 1.18944 1.78085 0.95359 1.18282 1.08911 1.47466 1.22159 1.16247 1.24127 1.22797 0.84572 0.92166 1.06429 1.23860 1.01639 1.01817 0.78771 1.21801 0.88492 0.88611 0.96426 0.88237 1.42641 1.48504 1.34010 1.11207 1.19728 1.17992 1.08087 0.90060 0.88973 1.25522 1.00357 1.00493 1.00806 1.69848 1.31078 1.27146 1.34540 0.85262 0.78347 0.76446 0.80482 1.21464 1.23946 1.18539 0.92022 0.91288 0.95508 0.94935 0.89946 0.78366 0.74257 0.87527 0.85789 0.85869 0.85884 0.91294 0.79778 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.73 71.98 0.63 -3.14 16 2 C -0.10 -2.49 3.41 -9.60 -0.03 -2.52 16 3 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.11 3.55 6.47 86.73 0.56 4.11 16 5 N -0.59 -19.48 3.33 -814.92 -2.71 -22.19 16 6 C 0.56 21.80 7.66 86.80 0.66 22.47 16 7 O -0.57 -27.35 16.96 -3.83 -0.06 -27.42 16 8 C -0.04 -1.28 5.68 -19.79 -0.11 -1.39 16 9 C -0.12 -2.43 8.19 22.65 0.19 -2.24 16 10 C 0.17 2.79 11.14 84.82 0.94 3.74 16 11 N -0.46 -10.39 10.35 -193.09 -2.00 -12.39 16 12 C 0.20 5.88 8.08 134.17 1.08 6.96 16 13 C -0.03 -1.16 6.97 40.06 0.28 -0.88 16 14 N -0.28 -11.76 12.19 -51.93 -0.63 -12.39 16 15 N -0.03 -0.88 13.07 37.02 0.48 -0.39 16 16 N -0.30 -8.06 3.79 -366.61 -1.39 -9.45 16 17 C 0.08 1.04 11.41 127.77 1.46 2.50 16 18 C 0.06 1.66 4.73 86.84 0.41 2.07 16 19 C 0.16 4.82 3.45 46.38 0.16 4.98 16 20 H 0.10 2.65 8.11 -2.39 -0.02 2.63 16 21 N -0.73 -32.73 4.67 -316.38 -1.48 -34.20 16 22 C -0.23 -11.38 9.97 84.04 0.84 -10.55 16 23 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 24 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 25 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 26 Si 0.96 44.83 29.55 68.60 2.03 46.86 16 27 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 28 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 29 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.03 1.01 6.43 -2.38 -0.02 0.99 16 33 H 0.03 1.25 7.78 -2.39 -0.02 1.24 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.20 2.56 4.86 -2.91 -0.01 2.54 16 36 H 0.24 0.92 8.06 -2.91 -0.02 0.90 16 37 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.12 1.81 6.87 -2.39 -0.02 1.79 16 41 H 0.07 2.09 6.91 -2.39 -0.02 2.07 16 42 H 0.37 19.40 6.23 -92.71 -0.58 18.82 16 43 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -88.73 358.07 2.54 -86.19 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.49 Total: 23.14 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 7.54 Total: 22.13 kcal Atomic # 7 Polarization: -143.45 SS G_CDS: -7.45 Total: -150.90 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.06 Total: -27.42 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -88.73 2.54 -86.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055014242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.078 kcal (2) G-P(sol) polarization free energy of solvation -88.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds