Wall clock time and date at job start Tue Mar 31 2020 05:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.63919 * 2 1 4 4 C 1.54319 * 110.72390 * 236.86008 * 2 1 3 5 5 N 1.47022 * 107.27408 * 219.43964 * 4 2 1 6 6 C 1.34769 * 125.65039 * 178.97053 * 5 4 2 7 7 O 1.21549 * 120.00136 * 354.20170 * 6 5 4 8 8 C 1.47883 * 120.00204 * 174.20111 * 6 5 4 9 9 C 1.39456 * 121.10651 * 334.22877 * 8 6 5 10 10 C 1.38621 * 119.36679 * 179.72882 * 9 8 6 11 11 N 1.31588 * 121.63884 * 0.56333 * 10 9 8 12 12 C 1.32205 * 121.86617 * 359.70892 * 11 10 9 13 13 C 1.40860 * 121.11739 * 154.50798 * 8 6 5 14 14 N 1.34395 * 135.14759 * 0.02562 * 13 8 6 15 15 N 1.28690 * 109.15433 * 180.02562 * 14 13 8 16 16 N 1.28783 * 111.75403 * 359.97438 * 15 14 13 17 17 C 1.46505 * 125.86556 * 179.97438 * 16 15 14 18 18 C 1.47422 * 108.69945 * 358.94393 * 5 4 2 19 19 C 1.55120 * 104.94714 * 23.99646 * 18 5 4 20 20 H 1.09007 * 110.93187 * 81.21859 * 19 18 5 21 21 N 1.46501 * 111.16557 * 205.13351 * 19 18 5 22 22 C 1.36939 * 120.00082 * 267.17351 * 21 19 18 23 23 H 1.08006 * 119.99762 * 359.97438 * 22 21 19 24 24 C 1.38806 * 120.00069 * 180.02562 * 22 21 19 25 25 N 1.31628 * 120.00038 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00281 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46909 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47034 * 119.99909 * 26 24 22 29 29 H 1.48507 * 109.47150 * 240.00197 * 26 24 22 30 30 H 1.09006 * 109.46820 * 179.29410 * 1 2 3 31 31 H 1.09002 * 109.47588 * 59.30433 * 1 2 3 32 32 H 1.08998 * 109.47805 * 299.30061 * 1 2 3 33 33 H 1.09001 * 109.88361 * 338.85605 * 4 2 1 34 34 H 1.08995 * 109.88531 * 99.86748 * 4 2 1 35 35 H 1.07994 * 120.32016 * 359.97191 * 9 8 6 36 36 H 1.08002 * 119.18183 * 180.28109 * 10 9 8 37 37 H 1.09001 * 109.47052 * 90.02960 * 17 16 15 38 38 H 1.09007 * 109.47018 * 210.02923 * 17 16 15 39 39 H 1.09001 * 109.47334 * 330.02509 * 17 16 15 40 40 H 1.08999 * 110.36838 * 142.96754 * 18 5 4 41 41 H 1.09005 * 110.36293 * 265.17481 * 18 5 4 42 42 H 0.97001 * 119.99863 * 87.17133 * 21 19 18 43 43 H 0.96994 * 120.00150 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2086 5 7 3.2446 -1.5493 -0.7416 6 6 3.9924 -2.3809 -1.4937 7 8 3.6586 -2.6340 -2.6348 8 6 5.2190 -2.9854 -0.9308 9 6 5.9202 -2.3635 0.1018 10 6 7.0627 -2.9649 0.6063 11 7 7.5109 -4.1058 0.1277 12 6 6.8942 -4.7414 -0.8539 13 6 5.7214 -4.2056 -1.4236 14 7 5.3472 -5.0737 -2.3788 15 7 6.1844 -6.0505 -2.4131 16 7 7.1180 -5.9099 -1.5373 17 6 8.2281 -6.8384 -1.3094 18 6 3.4633 -1.2508 0.6854 19 6 2.0790 -0.7933 1.2151 20 1 1.4452 -1.6511 1.4403 21 7 2.2214 0.0738 2.3874 22 6 2.1867 -0.4651 3.6458 23 1 2.0540 -1.5292 3.7741 24 6 2.3211 0.3565 4.7565 25 7 2.4824 1.6535 4.6001 26 14 2.2731 -0.3783 6.4732 27 1 2.0825 -1.8480 6.3774 28 1 3.5514 -0.0890 7.1714 29 1 1.1467 0.2178 7.2356 30 1 -0.3633 -1.0277 -0.0127 31 1 -0.3634 0.5246 -0.8837 32 1 -0.3634 0.5029 0.8961 33 1 1.3131 -1.4732 -1.5800 34 1 2.3715 -0.0991 -1.9989 35 1 5.5743 -1.4242 0.5073 36 1 7.6009 -2.4830 1.4091 37 1 9.0717 -6.5579 -1.9401 38 1 8.5276 -6.7966 -0.2621 39 1 7.9109 -7.8516 -1.5563 40 1 3.7961 -2.1445 1.2133 41 1 4.1946 -0.4504 0.7977 42 1 2.3403 1.0295 2.2721 43 1 2.5760 2.2276 5.3763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055014243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:56 Heat of formation + Delta-G solvation = 127.515665 kcal Electronic energy + Delta-G solvation = -28086.832462 eV Core-core repulsion = 24170.542592 eV Total energy + Delta-G solvation = -3916.289870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.52212 -40.27041 -38.88266 -37.58085 -35.21145 -34.22130 -33.16985 -31.92509 -30.99830 -30.74216 -28.23202 -27.73757 -26.76207 -25.32478 -24.08599 -23.78616 -22.51313 -21.39310 -20.01494 -19.54421 -19.03791 -17.69400 -17.29118 -17.21282 -17.10734 -16.06339 -15.77509 -15.23661 -14.89735 -14.55851 -14.17094 -13.86098 -13.71625 -13.61155 -13.34102 -13.22251 -13.09386 -12.85259 -12.79493 -12.63792 -12.42973 -11.98632 -11.74971 -11.60154 -11.26609 -11.18095 -11.07395 -10.77580 -10.66790 -10.29039 -10.26019 -10.04282 -9.84428 -9.59840 -9.37731 -9.13121 -9.06933 -8.45529 -7.17479 -5.93419 -3.24610 -0.06844 0.73078 1.68612 2.04396 2.75772 2.93084 3.33527 3.40748 3.42196 3.42489 3.50001 4.03018 4.11195 4.31265 4.40085 4.46440 4.65613 4.74470 4.91026 4.95014 5.01729 5.10608 5.16477 5.33344 5.39886 5.47661 5.55804 5.60332 5.66798 5.77629 5.83968 5.95078 5.96962 6.12997 6.14285 6.17871 6.28350 6.37597 6.43210 6.57152 6.77274 7.30379 7.56348 7.59867 8.04346 8.17886 8.24144 9.36423 9.88630 10.23907 11.28195 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.003499 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.198066 B = 7999.485271 C = 9679.692473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.086 0.914 4 C 0.118 3.882 5 N -0.604 5.604 6 C 0.566 3.434 7 O -0.517 6.517 8 C -0.006 4.006 9 C -0.143 4.143 10 C 0.162 3.838 11 N -0.460 5.460 12 C 0.208 3.792 13 C 0.002 3.998 14 N -0.220 5.220 15 N -0.009 5.009 16 N -0.312 5.312 17 C 0.092 3.908 18 C 0.062 3.938 19 C 0.178 3.822 20 H 0.070 0.930 21 N -0.708 5.708 22 C -0.250 4.250 23 H 0.073 0.927 24 C -0.006 4.006 25 N -0.927 5.927 26 Si 0.906 3.094 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.172 0.828 36 H 0.184 0.816 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.388 0.612 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.610 -9.623 -9.394 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 H 0.104 0.896 4 C -0.005 4.005 5 N -0.338 5.338 6 C 0.353 3.647 7 O -0.392 6.392 8 C -0.022 4.022 9 C -0.166 4.166 10 C -0.010 4.010 11 N -0.174 5.174 12 C -0.034 4.034 13 C -0.128 4.128 14 N -0.095 5.095 15 N 0.009 4.991 16 N -0.114 5.114 17 C -0.048 4.048 18 C -0.064 4.064 19 C 0.065 3.935 20 H 0.088 0.912 21 N -0.347 5.347 22 C -0.381 4.381 23 H 0.091 0.909 24 C -0.202 4.202 25 N -0.575 5.575 26 Si 0.737 3.263 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.189 0.811 36 H 0.201 0.799 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.222 0.778 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.684 -11.310 -10.719 18.347 hybrid contribution 0.064 0.831 1.547 1.758 sum 9.748 -10.480 -9.172 16.999 Atomic orbital electron populations 1.21660 0.93819 1.01736 1.01974 1.22542 0.96653 0.99834 0.94447 0.89612 1.22036 0.87154 0.94257 0.97047 1.48349 1.29720 1.43449 1.12264 1.17541 0.82648 0.79129 0.85377 1.90832 1.70595 1.60059 1.17747 1.19533 0.95902 0.91663 0.95092 1.23003 0.95995 1.02643 0.94998 1.22917 0.92750 0.88525 0.96840 1.66284 1.32196 1.09471 1.09447 1.19773 0.95275 0.90943 0.97391 1.20081 0.96595 0.97647 0.98447 1.75488 1.18395 0.98988 1.16608 1.78219 0.94661 1.18565 1.07628 1.46978 1.22413 1.16553 1.25459 1.22266 0.85556 0.92283 1.04726 1.23887 1.03135 1.00712 0.78632 1.21407 0.91528 0.93834 0.86748 0.91179 1.42300 1.86066 1.06239 1.00098 1.19283 1.42979 0.92756 0.83035 0.90912 1.24751 1.02126 0.95408 0.97960 1.69663 1.55793 1.02661 1.29339 0.86146 0.77303 0.78215 0.84655 1.20465 1.21716 1.21763 0.92846 0.93154 0.91294 0.91255 0.91606 0.81107 0.79889 0.89177 0.87924 0.87856 0.90788 0.90624 0.77779 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.14 37.16 0.34 -1.48 16 2 C -0.11 -1.67 3.19 -88.79 -0.28 -1.95 16 3 H 0.09 1.26 8.00 -51.92 -0.42 0.84 16 4 C 0.12 1.68 6.47 -3.07 -0.02 1.66 16 5 N -0.60 -9.28 3.33 -171.49 -0.57 -9.85 16 6 C 0.57 9.63 7.66 -12.32 -0.09 9.53 16 7 O -0.52 -10.39 16.95 5.32 0.09 -10.30 16 8 C -0.01 -0.08 5.68 -104.50 -0.59 -0.68 16 9 C -0.14 -1.70 8.19 -38.99 -0.32 -2.02 16 10 C 0.16 1.69 11.14 -17.51 -0.20 1.49 16 11 N -0.46 -5.61 10.35 -12.38 -0.13 -5.74 16 12 C 0.21 2.88 8.08 -156.21 -1.26 1.61 16 13 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 14 N -0.22 -3.84 12.19 32.23 0.39 -3.45 16 15 N -0.01 -0.13 13.07 60.35 0.79 0.66 16 16 N -0.31 -3.77 3.79 -67.22 -0.26 -4.02 16 17 C 0.09 0.57 11.41 59.85 0.68 1.26 16 18 C 0.06 0.94 4.74 -2.42 -0.01 0.93 16 19 C 0.18 3.06 3.17 -65.67 -0.21 2.85 16 20 H 0.07 1.27 8.00 -51.93 -0.42 0.86 16 21 N -0.71 -15.29 5.25 -51.24 -0.27 -15.56 16 22 C -0.25 -6.17 9.96 -15.06 -0.15 -6.32 16 23 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 24 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 25 N -0.93 -25.60 13.06 55.49 0.72 -24.88 16 26 Si 0.91 20.72 29.55 -169.99 -5.02 15.70 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.00 7.80 -51.93 -0.41 0.59 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.17 1.84 4.86 -52.49 -0.26 1.59 16 36 H 0.18 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 1.11 6.91 -51.93 -0.36 0.76 16 41 H 0.08 1.11 6.86 -51.93 -0.36 0.75 16 42 H 0.39 8.97 7.76 -40.82 -0.32 8.65 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -32.97 361.53 -7.05 -40.02 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.45 Total: 5.91 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -2.80 Total: 6.08 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.68 Total: -62.85 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.97 -7.05 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055014243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.535 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds